William B Whitman - Publications

Affiliations: 
University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 

254 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Couceiro JF, Keller-Costa T, Marques M, Kyrpides NC, Woyke T, Whitman WB, Costa R. The Roseibium album (Labrenzia alba) Genome Possesses Multiple Symbiosis Factors Possibly Underpinning Host-Microbe Relationships in the Marine Benthos. Microbiology Resource Announcements. 10: e0032021. PMID 34435855 DOI: 10.1128/MRA.00320-21  1
2021 Rinke C, Chuvochina M, Mussig AJ, Chaumeil PA, Davín AA, Waite DW, Whitman WB, Parks DH, Hugenholtz P. A standardized archaeal taxonomy for the Genome Taxonomy Database. Nature Microbiology. PMID 34155373 DOI: 10.1038/s41564-021-00918-8  1
2021 Roldán DM, Kyrpides N, Woyke T, Shapiro N, Whitman WB, Králová S, Sedláček I, Busse HJ, Menes RJ. sp. nov., an airborne bacterium isolated from King George Island, Antarctica. International Journal of Systematic and Evolutionary Microbiology. 71. PMID 34152267 DOI: 10.1099/ijsem.0.004838  1
2021 Volpiano CG, Sant'Anna FH, Ambrosini A, de São José JFB, Beneduzi A, Whitman WB, de Souza EM, Lisboa BB, Vargas LK, Passaglia LMP. Genomic Metrics Applied to (): Species Reclassification, Identification of Unauthentic Genomes and False Type Strains. Frontiers in Microbiology. 12: 614957. PMID 33841347 DOI: 10.3389/fmicb.2021.614957  0.01
2020 Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... Whitman WB, et al. Author Correction: Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 33184503 DOI: 10.1038/s41564-020-00827-2  1
2020 Waite DW, Chuvochina M, Pelikan C, Parks DH, Yilmaz P, Wagner M, Loy A, Naganuma T, Nakai R, Whitman WB, Hahn MW, Kuever J, Hugenholtz P. Proposal to reclassify the proteobacterial classes and , and the phylum into four phyla reflecting major functional capabilities. International Journal of Systematic and Evolutionary Microbiology. PMID 33151140 DOI: 10.1099/ijsem.0.004213  1
2020 Tapia-García EY, Arroyo-Herrera I, Rojas-Rojas FU, Ibarra JA, Vásquez-Murrieta MS, Martínez-Aguilar L, López-Lara IM, Whitman WB, Estrada de Los Santos P. Paraburkholderia lycopersici sp. nov., a nitrogen-fixing species isolated from rhizoplane of Lycopersicon esculentum Mill. var. Saladette in Mexico. Systematic and Applied Microbiology. 43: 126133. PMID 32998072 DOI: 10.1016/J.Syapm.2020.126133  0.01
2020 Sutcliffe IC, Whitman WB. The van Niel International Prize for Studies in Bacterial Systematics, awarded in 2020 to Tanja Woyke. International Journal of Systematic and Evolutionary Microbiology. PMID 32956033 DOI: 10.1099/Ijsem.0.004466  0.01
2020 Madhaiyan M, Saravanan VS, Wirth JS, Alex THH, Kim SJ, Weon HY, Kwon SW, Whitman WB, Ji L. Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants. Antonie Van Leeuwenhoek. PMID 32949307 DOI: 10.1007/S10482-020-01468-5  1
2020 Roldán DM, Kyrpides N, Woyke T, Shapiro N, Whitman WB, Králová S, Sedláček I, Busse HJ, Menes RJ. sp. nov., isolated from air sampling in maritime Antarctica. International Journal of Systematic and Evolutionary Microbiology. PMID 32744985 DOI: 10.1099/Ijsem.0.004362  1
2020 Sutcliffe IC, Dijkshoorn L, Whitman WB, Executive Board OBOTI. Minutes of the International Committee on Systematics of Prokaryotes online discussion on the proposed use of gene sequences as type for naming of prokaryotes, and outcome of vote. International Journal of Systematic and Evolutionary Microbiology. 70: 4416-4417. PMID 32628106 DOI: 10.1099/Ijsem.0.004303  0.01
2020 Arroyo-Herrera I, Maldonado-Hernández J, Rojas-Rojas FU, Meza-Radilla G, Larios-Serrato V, Vásquez-Murrieta MS, Whitman WB, Estrada-de Los Santos P. sp. nov., a species isolated from L. rhizosphere in northeast Mexico. International Journal of Systematic and Evolutionary Microbiology. PMID 32539928 DOI: 10.1099/Ijsem.0.004263  0.01
2020 Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... Whitman WB, et al. Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 32514073 DOI: 10.1038/S41564-020-0733-X  1
2020 Laviad-Shitrit S, Izhaki I, Whitman WB, Shapiro N, Woyke T, Kyrpides NC, Halpern M. Draft genome of strain 8N4 provides insights into the potential role of this species in its plant host. Peerj. 8: e8822. PMID 32292647 DOI: 10.7717/Peerj.8822  1
2020 Meyers DJ, Leigh BA, Huntemann M, Clum A, Ritter S, Palaniappan K, Chen IM, Stamatis D, Reddy TBK, O'Malley R, Daum C, Shapiro N, Ivanova N, Kyrpides NC, Woyke T, ... Whitman WB, et al. Draft Genome Sequence of Yokenella regensburgei Strain WCD67, Isolated from the Boxelder Bug. Microbiology Resource Announcements. 9. PMID 32273354 DOI: 10.1128/MRA.00104-20  1
2020 Wirth JS, Wang T, Huang Q, White RH, Whitman WB. Dimethylsulfoniopropionate Sulfur and Methyl Carbon Assimilation in Species. Mbio. 11. PMID 32209679 DOI: 10.1128/Mbio.00329-20  1
2020 Madhaiyan M, See-Too WS, Ee R, Saravanan VS, Wirth JS, Alex THH, Lin C, Kim SJ, Weon HY, Kwon SW, Whitman WB, Ji L. gen. nov., sp. nov., a new member of the family isolated from leaf tissues of oil palm ( Jacq.). International Journal of Systematic and Evolutionary Microbiology. PMID 32202992 DOI: 10.1099/Ijsem.0.004084  1
2020 Rossello-Mora R, Konstantinidis KT, Sutcliffe I, Whitman W. Opinion: Response to concerns about the use of DNA sequences as types in the nomenclature of prokaryotes. Systematic and Applied Microbiology. 126070. PMID 32081606 DOI: 10.1016/J.Syapm.2020.126070  1
2020 Madhaiyan M, Saravanan VS, Wirth JS, Whitman WB. Reclassification of as a later heterotypic synonym of based on whole-genome sequence analysis. International Journal of Systematic and Evolutionary Microbiology. PMID 32053091 DOI: 10.1099/Ijsem.0.004045  1
2019 Madhaiyan M, Saravanan VS, Blom J, Smits THM, Rezzonico F, Kim SJ, Weon HY, Kwon SW, Whitman WB, Ji L. sp. nov., a novel endophytic, N fixing, plant growth promoting isolated from oil palm (). International Journal of Systematic and Evolutionary Microbiology. PMID 31829916 DOI: 10.1099/Ijsem.0.003834  1
2019 Lyu Z, Shao N, Chou CW, Shi H, Patel R, Duin EC, Whitman WB. Post-translational methylation of arginine in methyl-coenzyme M reductase has a profound impact on both methanogenesis and growth of . Journal of Bacteriology. PMID 31740491 DOI: 10.1128/Jb.00654-19  1
2019 Zhao C, Lyu Z, Long F, Akinyemi T, Manakongtreecheep K, Söll D, Whitman WB, Vinyard DJ, Liu Y. The Nbp35/ApbC homolog acts as a nonessential [4Fe-4S] transfer protein in methanogenic archaea. Febs Letters. PMID 31709520 DOI: 10.1002/1873-3468.13673  1
2019 Li J, Zhang B, Zhou L, Qi L, Yue L, Zhang W, Cheng H, Whitman WB, Dong X. The archaeal RNA chaperone TRAM0076 shapes the transcriptome and optimizes the growth of Methanococcus maripaludis. Plos Genetics. 15: e1008328. PMID 31404065 DOI: 10.1371/Journal.Pgen.1008328  0.01
2019 Nowinski B, Smith CB, Thomas CM, Esson K, Marin R, Preston CM, Birch JM, Scholin CA, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, ... ... Whitman WB, et al. Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom. Scientific Data. 6: 129. PMID 31332186 DOI: 10.1038/S41597-019-0132-4  1
2019 Whitman WB, Sutcliffe IC, Rossello-Mora R. Proposal for changes in the International Code of Nomenclature of Prokaryotes: granting priority to Candidatus names. International Journal of Systematic and Evolutionary Microbiology. PMID 31066658 DOI: 10.1099/Ijsem.0.003419  0.01
2019 Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Whitman WB, et al. Consent insufficient for data release-Response. Science (New York, N.Y.). 364: 446. PMID 31048484 DOI: 10.1126/Science.Aax7509  1
2019 Avontuur JR, Palmer M, Beukes CW, Chan WY, Coetzee MPA, Blom J, Stępkowski T, Kyrpides NC, Woyke T, Shapiro N, Whitman WB, Venter SN, Steenkamp ET. Genome-informed Bradyrhizobium taxonomy: where to from here? Systematic and Applied Microbiology. PMID 31031014 DOI: 10.1016/J.Syapm.2019.03.006  1
2019 Albert RA, McGuine M, Pavlons SC, Roecker J, Bruess J, Mossman S, Sun S, King M, Hong S, Farrance CE, Danner J, Joung Y, Shapiro N, Whitman WB, Busse HJ. Bosea psychrotolerans sp. nov., a psychrotrophic alphaproteobacterium isolated from Lake Michigan water. International Journal of Systematic and Evolutionary Microbiology. PMID 30882299 DOI: 10.1099/Ijsem.0.003319  0.01
2019 Lyu Z, Whitman WB. Transplanting the pathway engineering toolbox to methanogens. Current Opinion in Biotechnology. 59: 46-54. PMID 30875664 DOI: 10.1016/J.Copbio.2019.02.009  1
2019 Portugal R, Shao N, Whitman WB, Allen KD, White RH. Identification and biosynthesis of 2-(1H-imidazol-5-yl) ethan-1-ol (histaminol) in methanogenic archaea. Microbiology (Reading, England). PMID 30714894 DOI: 10.1099/Mic.0.000779  1
2019 Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, ... ... Whitman WB, et al. Toward unrestricted use of public genomic data. Science (New York, N.Y.). 363: 350-352. PMID 30679363 DOI: 10.1126/Science.Aaw1280  1
2019 Wirth JS, Whitman WB. An efficient method for synthesizing dimethylsulfonio- S-propionate hydrochloride from S. Journal of Labelled Compounds & Radiopharmaceuticals. 62: 52-58. PMID 30428130 DOI: 10.1002/Jlcr.3696  1
2019 Rosselló-Móra R, Whitman WB. Dialogue on the nomenclature and classification of prokaryotes. Systematic and Applied Microbiology. 42: 5-14. PMID 30017185 DOI: 10.1016/J.Syapm.2018.07.002  1
2018 Vasilenko OV, Starodumova IP, Dorofeeva LV, Tarlachkov SV, Prisyazhnaya NV, Chizhov VN, Subbotin SA, Huntemann M, Clum A, Duffy K, Pillay M, Palaniappan K, Varghese N, Chen IA, Stamatis D, ... ... Whitman WB, et al. Draft Genome Sequences of New Isolates and the Known Species of the Family Microbacteriaceae Associated with Plants. Microbiology Resource Announcements. 7. PMID 30533634 DOI: 10.1128/MRA.01051-18  1
2018 Whitman WB, Bull CT, Busse HJ, Fournier PE, Oren A, Ventura S. Request for revision of the Statutes of the International Committee on Systematics of Prokaryotes. International Journal of Systematic and Evolutionary Microbiology. PMID 30520713 DOI: 10.1099/Ijsem.0.003117  1
2018 Lin YT, Whitman WB, Coleman DC, Chiu CY. Effects of Reforestation on the Structure and Diversity of Bacterial Communities in Subtropical Low Mountain Forest Soils. Frontiers in Microbiology. 9: 1968. PMID 30186273 DOI: 10.3389/Fmicb.2018.01968  1
2018 Chuvochina M, Rinke C, Parks DH, Rappé MS, Tyson GW, Yilmaz P, Whitman WB, Hugenholtz P. The importance of designating type material for uncultured taxa. Systematic and Applied Microbiology. PMID 30098831 DOI: 10.1016/J.Syapm.2018.07.003  1
2018 Estrada-de Los Santos P, Palmer M, Chávez-Ramírez B, Beukes C, Steenkamp ET, Briscoe L, Khan N, Maluk M, Lafos M, Humm E, Arrabit M, Crook M, Gross E, Simon MF, Dos Reis Junior FB, ... Whitman WB, et al. Whole Genome Analyses Suggests that sensu lato Contains Two Additional Novel Genera ( gen. nov., and gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the . Genes. 9. PMID 30071618 DOI: 10.3390/Genes9080389  0.01
2018 Lyu Z, Shao N, Akinyemi T, Whitman WB. Methanogenesis. Current Biology : Cb. 28: R727-R732. PMID 29990451 DOI: 10.1016/j.cub.2018.05.021  1
2018 Vorobev A, Sharma S, Yu M, Lee J, Washington BJ, Whitman WB, Ballantyne F, Medeiros PM, Moran MA. Identifying labile DOM components in a coastal ocean through depleted bacterial transcripts and chemical signals. Environmental Microbiology. PMID 29968336 DOI: 10.1111/1462-2920.14344  1
2018 Wirth JS, Whitman WB. Phylogenomic analyses of a clade within the roseobacter group suggest taxonomic reassignments of species of the genera Aestuariivita, Citreicella, Loktanella, Nautella, Pelagibaca, Ruegeria, Thalassobius, Thiobacimonas and Tropicibacter, and the proposal of six novel genera. International Journal of Systematic and Evolutionary Microbiology. 68: 2393-2411. PMID 29809121 DOI: 10.1099/Ijsem.0.002833  1
2018 Pitt A, Schmidt J, Lang E, Whitman WB, Woyke T, Hahn MW. Polynucleobacter meluiroseus sp. nov., a bacterium isolated from a lake located in the mountains of the Mediterranean island of Corsica. International Journal of Systematic and Evolutionary Microbiology. PMID 29688164 DOI: 10.1099/Ijsem.0.002777  1
2018 Beukes CW, Palmer M, Manyaka P, Chan WY, Avontuur JR, van Zyl E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, ... ... Whitman WB, et al. Corrigendum: Genome Data Provides High Support for Generic Boundaries inSensu Lato. Frontiers in Microbiology. 9: 373. PMID 29576763 DOI: 10.3389/Fmicb.2018.00373  1
2018 Whitman WB, Oren A, Chuvochina M, da Costa MS, Garrity GM, Rainey FA, Rossello-Mora R, Schink B, Sutcliffe I, Trujillo ME, Ventura S. Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'. International Journal of Systematic and Evolutionary Microbiology. PMID 29458499 DOI: 10.1099/Ijsem.0.002593  1
2018 Chernikova TN, Kyrpides N, Bargiela R, Woyke T, Shapiro N, Whitman WB, Golyshin PN. Draft Genome Sequence of C7, Isolated from Seawater from the Menai Straits, Wales, United Kingdom. Genome Announcements. 6. PMID 29437088 DOI: 10.1128/Genomea.01444-17  1
2018 Lyu Z, Chou CW, Shi H, Wang L, Ghebreab R, Phillips D, Yan Y, Duin EC, Whitman WB. Assembly of methyl-coenzyme M reductase in the methanogenic archaeon Methanococcus maripaludis. Journal of Bacteriology. PMID 29339414 DOI: 10.1128/Jb.00746-17  1
2018 Škraban J, Kyrpides NC, Shapiro N, Whitman WB, Trček J. Draft genome sequence of Chryseobacterium limigenitum SUR2 (LMG 28734) isolated from dehydrated sludge. Brazilian Journal of Microbiology : [Publication of the Brazilian Society For Microbiology]. 49: 5-6. PMID 28774639 DOI: 10.1016/J.Bjm.2017.03.009  1
2017 Long F, Wang L, Lupa B, Whitman WB. A Flexible System for Cultivation of Methanococcus and Other Formate-Utilizing Methanogens. Archaea (Vancouver, B.C.). 2017: 7046026. PMID 29348732 DOI: 10.1155/2017/7046026  1
2017 Proença DN, Whitman WB, Varghese N, Shapiro N, Woyke T, Kyrpides NC, Morais PV. Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov. Systematic and Applied Microbiology. PMID 29325988 DOI: 10.1016/J.Syapm.2017.11.006  1
2017 Aserse AA, Woyke T, Kyrpides NC, Whitman WB, Lindström K. Draft genome sequences of sp. nov. ERR11 and CCBAU 10071. Standards in Genomic Sciences. 12: 74. PMID 29225730 DOI: 10.1186/S40793-017-0283-X  1
2017 Chen M, Kato K, Kubo Y, Tanaka Y, Liu Y, Long F, Whitman WB, Lill P, Gatsogiannis C, Raunser S, Shimizu N, Shinoda A, Nakamura A, Tanaka I, Yao M. Structural basis for tRNA-dependent cysteine biosynthesis. Nature Communications. 8: 1521. PMID 29142195 DOI: 10.1038/S41467-017-01543-Y  1
2017 Madhaiyan M, Alex THH, Cho H, Kim SJ, Weon HY, Kwon SW, Whitman WB, Ji L. Sphingomonas jatrophae sp. nov. and Sphingomonas carotinifaciens sp. nov., two yellow-pigmented endophytes isolated from stem tissues of Jatropha curcas L. International Journal of Systematic and Evolutionary Microbiology. PMID 29087271 DOI: 10.1099/Ijsem.0.002434  1
2017 Hahn MW, Schmidt J, Asiyo GS, Kyrpides NC, Woyke T, Whitman WB. Reclassification of a Polynucleobacter cosmopolitanus strain isolated from tropical Lake Victoria as Polynucleobacter victoriensis sp. nov. International Journal of Systematic and Evolutionary Microbiology. PMID 29068276 DOI: 10.1099/Ijsem.0.002421  1
2017 Proença DN, Whitman WB, Shapiro N, Woyke T, Kyrpides NC, Morais PV. Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2(T). Standards in Genomic Sciences. 12: 53. PMID 28904742 DOI: 10.1186/S40793-017-0262-2  1
2017 Vaz-Moreira I, Narciso-da-Rocha C, Lopes AR, Carvalho G, Lobo-da-Cunha A, Whitman WB, Snauwaert C, Vandamme P, Manaia CM, Nunes OC. Oryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium. International Journal of Systematic and Evolutionary Microbiology. PMID 28895512 DOI: 10.1099/Ijsem.0.002184  0.01
2017 Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Vargese N, Kyrpides NC, Pillay M, Ivanova N, Mikhailova N, Mukherjee S, Stamatis D, Reddy TBK, Ngan CY, Chovatia M, et al. Genome Sequence of Roseovarius sp. Strain MCTG156(2b) Isolated from a Phytoplankton Net Trawl on the Scottish West Coast. Genome Announcements. 5. PMID 28860240 DOI: 10.1128/Genomea.00837-17  1
2017 Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Vargese N, Kyrpides NC, Pillay M, Ivanova N, Mikhailova N, Mukherjee S, Stamatis D, Reddy TBK, Ngan CY, Chovatia M, et al. Genome Sequence of Oceanicola sp. Strain MCTG156(1a), Isolated from a Scottish Coastal Phytoplankton Net Sample. Genome Announcements. 5. PMID 28798189 DOI: 10.1128/Genomea.00796-17  1
2017 Beukes CW, Palmer M, Manyaka P, Chan WY, Avontuur JR, van Zyl E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TBK, Daum C, ... ... Whitman WB, et al. Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato. Frontiers in Microbiology. 8: 1154. PMID 28694797 DOI: 10.3389/Fmicb.2017.01154  1
2017 Madhaiyan M, Poonguzhali S, Saravanan VS, Duraipandiyan V, Al-Dhabi NA, Kwon SW, Whitman WB. Paenibacillus polysaccharolyticus sp. nov., a xylanolytic and cellulolytic bacteria isolated from leaves of Bamboo Phyllostachys aureosulcata. International Journal of Systematic and Evolutionary Microbiology. PMID 28671536 DOI: 10.1099/Ijsem.0.001901  1
2017 Whitman WB. Bacteria and the Fate of Estrogen in the Environment. Cell Chemical Biology. 24: 652-653. PMID 28644954 DOI: 10.1016/J.Chembiol.2017.05.028  0.01
2017 Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, et al. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. Nature Biotechnology. PMID 28604660 DOI: 10.1038/Nbt.3886  1
2017 Gopal M, Bhute SS, Gupta A, Prabhu SR, Thomas GV, Whitman WB, Jangid K. Changes in structure and function of bacterial communities during coconut leaf vermicomposting. Antonie Van Leeuwenhoek. PMID 28597254 DOI: 10.1007/S10482-017-0894-7  1
2017 Whitman WB. Proposed revisions of the Statutes of the International Committee of Systematics of Prokaryotes. International Journal of Systematic and Evolutionary Microbiology. PMID 28593833 DOI: 10.1099/Ijsem.0.001989  0.01
2017 Simon L, Škraban J, Kyrpides NC, Woyke T, Shapiro N, Cleenwerck I, Vandamme P, Whitman WB, Trček J. Paenibacillus aquistagni sp. nov., isolated from an artificial lake accumulating industrial wastewater. Antonie Van Leeuwenhoek. PMID 28555445 DOI: 10.1007/S10482-017-0891-X  1
2017 Weimar MR, Cheung J, Dey D, McSweeney C, Morrison M, Kobayashi Y, Whitman WB, Carbone V, Schofield LR, Ronimus RS, Cook GM. Development of multi-well plate methods using pure cultures of methanogens to identify new inhibitors for suppressing ruminant methane emissions. Applied and Environmental Microbiology. PMID 28526787 DOI: 10.1128/Aem.00396-17  0.01
2017 Bandyopadhyay S, Whitman WB, Das SK. Draft Genome Sequence of Pannonibacter indicus Strain HT23(T) (DSM 23407(T)), a Highly Arsenate-Tolerant Bacterium Isolated from a Hot Spring in India. Genome Announcements. 5. PMID 28473384 DOI: 10.1128/Genomea.00283-17  0.01
2017 Bullock HA, Luo H, Whitman WB. Evolution of Dimethylsulfoniopropionate Metabolism in Marine Phytoplankton and Bacteria. Frontiers in Microbiology. 8: 637. PMID 28469605 DOI: 10.3389/Fmicb.2017.00637  1
2017 Badhai J, Whitman WB, Das SK. Draft Genome Sequence of Rhizobiumpusense Strain NRCPB10(T) (LMG 25623(T)) Isolated from Rhizosphere Soil of Chickpeas (Cicer arietinum L.) Grown in India. Genome Announcements. 5. PMID 28450528 DOI: 10.1128/Genomea.00282-17  0.01
2017 Patil Y, Müller N, Schink B, Whitman WB, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Daum C, Shapiro N, Ivanova N, et al. High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11(T) (DSM 29698). Standards in Genomic Sciences. 12: 24. PMID 28250895 DOI: 10.1186/S40793-017-0236-4  1
2017 Aserse AA, Woyke T, Kyrpides NC, Whitman WB, Lindström K. Draft genome sequence of type strain HBR26 and description of sp. nov. Standards in Genomic Sciences. 12: 14. PMID 28163823 DOI: 10.1186/S40793-017-0220-Z  1
2017 Pikuta EV, Lyu Z, Williams MD, Patel NB, Liu Y, Hoover RB, Busse HJ, Lawson PA, Whitman WB. Sanguibacter gelidistatuariae sp. nov., a novel psychrotolerant anaerobe from an ice sculpture in Antarctica, and emendation of descriptions for the family Sanguibacteraceae, the genus Sanguibacter and species S. antarcticus, S. inulinus, S. kedieii, S. marinus, S.soli and S. suarezii. International Journal of Systematic and Evolutionary Microbiology. PMID 28150571 DOI: 10.1099/Ijsem.0.001838  1
2016 Shanmugam SG, Magbanua ZV, Williams MA, Jangid K, Whitman WB, Peterson DG, Kingery WL. Erratum to: Bacterial Diversity Patterns Differ in Soils Developing in Sub-tropical and Cool-Temperate Ecosystems. Microbial Ecology. PMID 27942767 DOI: 10.1007/S00248-016-0909-3  1
2016 Jangid K, Kao MH, Lahamge A, Williams MA, Rathbun SL, Whitman WB. K-shuff: A Novel Algorithm for Characterizing Structural and Compositional Diversity in Gene Libraries. Plos One. 11: e0167634. PMID 27911946 DOI: 10.1371/Journal.Pone.0167634  1
2016 Pikuta EV, Menes RJ, Bruce AM, Lyu Z, Patel N, Liu Y, Hoover RB, Busse HJ, Lawson PA, Whitman WB. Raineyella antarctica gen. nov., sp. nov., a novel psychrotolerant, D-amino acid utilizing anaerobe isolated from two geographic locations of the Southern Hemisphere. International Journal of Systematic and Evolutionary Microbiology. PMID 27902285 DOI: 10.1099/Ijsem.0.001552  1
2016 Shanmugam SG, Magbanua ZV, Williams MA, Jangid K, Whitman WB, Peterson DG, Kingery WL. Bacterial diversity patterns differed in two developing ecosystems. Microbial Ecology. PMID 27889811 DOI: 10.1007/s00248-016-0884-8  1
2016 Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Pillay M, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, et al. Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum. Genome Announcements. 4. PMID 27609918 DOI: 10.1128/Genomea.00937-16  1
2016 Narayan KD, Badhai J, Whitman WB, Das SK. Draft Genome Sequence of Comamonas thiooxydans Strain S23T (DSM 17888T), a Thiosulfate-Oxidizing Bacterium Isolated from a Sulfur Spring in India. Genome Announcements. 4. PMID 27516520 DOI: 10.1128/Genomea.00834-16  0.01
2016 Poddar A, Lepcha RT, Whitman WB, Das SK. Draft Genome Sequence of Tepidiphilus thermophilus Strain JHK30T (JCM 19170T) Isolated from a Terrestrial Hot Spring in India. Genome Announcements. 4. PMID 27516519 DOI: 10.1128/Genomea.00832-16  0.01
2016 Lepcha RT, Poddar A, Whitman WB, Das SK. Draft Genome Sequence of Idiomarina woesei Strain W11T (DSM 27808T) Isolated from the Andaman Sea. Genome Announcements. 4. PMID 27516518 DOI: 10.1128/Genomea.00831-16  0.01
2016 Badhai J, Narayan KD, Whitman WB, Das SK. Draft Genome Sequence of Gulbenkiania indica Strain HT27T (DSM 17901T) Isolated from a Sulfur Spring in India. Genome Announcements. 4. PMID 27516517 DOI: 10.1128/Genomea.00830-16  0.01
2016 Badhai J, Whitman WB, Das SK. Draft Genome Sequence of Chelatococcus sambhunathii Strain HT4T (DSM 18167T) Isolated from a Hot Spring in India. Genome Announcements. 4. PMID 27516514 DOI: 10.1128/Genomea.00825-16  0.01
2016 Deep K, Poddar A, Whitman WB, Das SK. Draft Genome Sequence of Anoxybacillus suryakundensis Strain JS1T (DSM 27374T) Isolated from a Hot Spring in Jharkhand, India. Genome Announcements. 4. PMID 27516513 DOI: 10.1128/Genomea.00824-16  0.01
2016 Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Pillay M, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, et al. Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton. Genome Announcements. 4. PMID 27491994 DOI: 10.1128/Genomea.00765-16  1
2016 Burns AS, Bullock HA, Smith C, Huang Q, Whitman WB, Ann Moran M. sRNAs Expressed During DMSP Degradation by a Model Marine Bacterium. Environmental Microbiology Reports. PMID 27337503 DOI: 10.1111/1758-2229.12437  1
2016 Lyu Z, Whitman WB. Evolution of the archaeal and mammalian information processing systems: towards an archaeal model for human disease. Cellular and Molecular Life Sciences : Cmls. PMID 27261368 DOI: 10.1007/S00018-016-2286-Y  1
2016 Fang Y, Bullock H, Lee SA, Sekar N, Eiteman MA, Whitman WB, Ramasamy RP. Detection of methyl salicylate using bi-enzyme electrochemical sensor consisting salicylate hydroxylase and tyrosinase. Biosensors & Bioelectronics. 85: 603-610. PMID 27236726 DOI: 10.1016/J.Bios.2016.05.060  1
2016 Whitman WB. Modest proposals to expand the type material for naming of prokaryotes. International Journal of Systematic and Evolutionary Microbiology. 66: 2108-12. PMID 26902077 DOI: 10.1099/Ijsem.0.000980  0.01
2016 Lyu Z, Jain R, Smith P, Fetchko T, Yan Y, Whitman WB. Engineering the Autotroph Methanococcus maripaludis for Geraniol Production. Acs Synthetic Biology. PMID 26886063 DOI: 10.1021/Acssynbio.5B00267  1
2016 Federhen S, Rossello-Mora R, Klenk HP, Tindall BJ, Konstantinidis KT, Whitman WB, Brown D, Labeda D, Ussery D, Garrity GM, Colwell RR, Hasan N, Graf J, Parte A, Yarza P, et al. Meeting report: GenBank microbial genomic taxonomy workshop (12-13 May, 2015) Standards in Genomic Sciences. DOI: 10.1186/S40793-016-0134-1  1
2015 Oren A, da Costa MS, Garrity GM, Rainey FA, Rosselló-Móra R, Schink B, Sutcliffe I, Trujillo ME, Whitman WB. Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes. International Journal of Systematic and Evolutionary Microbiology. 65: 4284-7. PMID 26654112 DOI: 10.1099/Ijsem.0.000664  1
2015 Whitman WB. Insights into the life of an oxygenic phototroph. Proceedings of the National Academy of Sciences of the United States of America. 112: 14747-8. PMID 26567154 DOI: 10.1073/Pnas.1520098112  0.01
2015 Whitman WB, Lawson PA, Losey NA. Response to Tindall (2014) on the legitimacy of the names Solimonadaceae Losey et al. 2013, Xanthomonadaceae Saddler and Bradbury 2005 and Xanthomonadales Saddler and Bradbury 2005. International Journal of Systematic and Evolutionary Microbiology. 65: 2776. PMID 26329317 DOI: 10.1099/Ijsem.0.000492  1
2015 Whitman WB, Woyke T, Klenk HP, Zhou Y, Lilburn TG, Beck BJ, De Vos P, Vandamme P, Eisen JA, Garrity G, Hugenholtz P, Kyrpides NC. Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains. Standards in Genomic Sciences. 10: 26. PMID 26203337 DOI: 10.1186/S40793-015-0017-X  1
2015 Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Pillay M, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, et al. Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium. Genome Announcements. 3. PMID 26184945 DOI: 10.1128/Genomea.00793-15  1
2015 Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Pillay M, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, et al. Genome Sequence of Porticoccus hydrocarbonoclasticus Strain MCTG13d, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton. Genome Announcements. 3. PMID 26089431 DOI: 10.1128/Genomea.00672-15  1
2015 Lin YT, Whitman WB, Coleman DC, Shi SY, Tang SL, Chiu CY. Changes of soil bacterial communities in bamboo plantations at different elevations. Fems Microbiology Ecology. 91. PMID 25873459 DOI: 10.1093/Femsec/Fiv033  1
2015 Gutierrez T, Thompson HF, Angelova A, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, et al. Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton. Genome Announcements. 3. PMID 25814607 DOI: 10.1128/Genomea.00207-15  1
2015 Whitman WB. Genome sequences as the type material for taxonomic descriptions of prokaryotes. Systematic and Applied Microbiology. 38: 217-22. PMID 25769508 DOI: 10.1016/J.Syapm.2015.02.003  0.01
2015 Whitman WB, Lawson PA, Losey NA. Response to Tindall (2014) on the legitimacy of the names solimonadaceae Losey et al. 2013, Xanthomonadaceae Saddler and Bradbury 2005 and Xanthomonadales Saddler and Bradbury 2005 International Journal of Systematic and Evolutionary Microbiology. 65: 1086-1087. PMID 25589736 DOI: 10.1099/ijs.0.000061  1
2015 Li X, Huang Y, Whitman WB. The relationship of the whole genome sequence identity to DNA hybridization varies between genera of prokaryotes. Antonie Van Leeuwenhoek. 107: 241-9. PMID 25370015 DOI: 10.1007/S10482-014-0322-1  0.01
2015 Lyu Z, Pikuta EV, Hagel J, LaBrake GR, Hoover RB, Whitman WB. Molecular studies of anaerobic strains from Antarctica and their taxonomic identifications Proceedings of Spie. 9606. DOI: 10.1117/12.2192787  1
2015 Pikuta EV, Lyu Z, Whitman WB, Labrake GR, Wallis J, Wickramarathne K, Wickramasinghe NC, Hoover RB. Microbiological investigation of two chondrite meteorites: Murchison and Polonnaruwa Proceedings of Spie - the International Society For Optical Engineering. 9606. DOI: 10.1117/12.2191203  1
2015 Labeda D, Whitman WB. Statutes of the International Committee on Systematics of ProkaryotesSubcommittees and the Judicial Commission on Prokaryote Nomenclature of the Bacteriology and Applied Microbiology Division of the IUMS: Approved on 31 July 2014 by the ICSP, Palais des congrès de Montréal, Montreal, Canada International Journal of Systematic and Evolutionary Microbiology. 65: 1093-1100. DOI: 10.1099/Ijs.0.000019  0.01
2015 Ludwig W, Euzéby J, Schumann P, Busse H, Trujillo ME, Kämpfer P, Whitman WB. Road map of the phylum Actinobacteria Bergey's Manual of Systematics of Archaea and Bacteria. 1-28. DOI: 10.1007/978-0-387-68233-4_1  1
2015 Krieg NR, Ludwig W, Euzéby JP, Whitman WB. Bacteroidetes phyl. nov. Perspectives in Biology and Medicine. 1-2. DOI: 10.1002/9781118960608.Pbm00004  0.01
2015 Staley JT, Whitman WB. Fusobacteriales ord. nov Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Obm00063  0.01
2015 Ludwig W, Schleifer K, Whitman WB. Erysipelotrichales ord. nov Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Obm00062  0.01
2015 Ludwig W, Schleifer K, Whitman WB. Lactobacillales ord. nov Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Obm00058  0.01
2015 Boone DR, Whitman WB, Koga Y. Methanosarcinales ord. nov Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Obm00052  1
2015 Whitman WB. Methanothermococcus gen. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-4. DOI: 10.1002/9781118960608.Gbm00503  0.01
2015 Whitman WB. Methanotorris gen. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-3. DOI: 10.1002/9781118960608.Gbm00501  0.01
2015 Whitman WB. Methanocaldococcus gen. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-5. DOI: 10.1002/9781118960608.Gbm00500  0.01
2015 Staley JT, Whitman WB. Leptotrichiaceae fam. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Fbm00155  0.01
2015 Staley JT, Whitman WB. Fusobacteriaceae fam. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Fbm00154  0.01
2015 Ludwig W, Schleifer K, Whitman WB. Eubacteriaceae fam. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Fbm00130  0.01
2015 Ludwig W, Schleifer K, Whitman WB. Enterococcaceae fam. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-2. DOI: 10.1002/9781118960608.Fbm00125  0.01
2015 Ludwig W, Schleifer K, Whitman WB. Carnobacteriaceae fam. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Fbm00124  0.01
2015 Ludwig W, Schleifer K, Whitman WB. Aerococcaceae fam. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Fbm00123  0.01
2015 Ludwig W, Schleifer K, Whitman WB. “Sporolactobacillaceae” fam. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Fbm00117  0.01
2015 Vos PD, Ludwig W, Schleifer K, Whitman WB. “Paenibacillaceae” fam. nov Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Fbm00114  0.01
2015 Ludwig W, Schleifer K, Whitman WB. “Listeriaceae” fam. nov.† Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Fbm00113  0.01
2015 Boone DR, Whitman WB, Koga Y. Methanosaetaceae fam. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Fbm00104  1
2015 Whitman WB, Boone DR, Koga Y. Methanocaldococcaceae fam. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Fbm00099  1
2015 Ludwig W, Euzéby JP, Whitman WB. Rhodothermaceae fam. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-1. DOI: 10.1002/9781118960608.Fbm00066  0.01
2015 Ludwig W, Euzéby J, Whitman WB. Marinilabiliaceae fam. nov. Bergey's Manual of Systematics of Archaea and Bacteria. 1-2. DOI: 10.1002/9781118960608.Fbm00059  0.01
2015 Staley JT, Whitman WB. Fusobacteriia class. nov. Criminal Behaviour and Mental Health. 1-1. DOI: 10.1002/9781118960608.Cbm00036  0.01
2015 Ludwig W, Schleifer K, Whitman WB. Erysipelotrichia class. nov. Criminal Behaviour and Mental Health. 1-1. DOI: 10.1002/9781118960608.Cbm00035  0.01
2015 Ludwig W, Schleifer K, Whitman WB. Bacilli class. nov. Criminal Behaviour and Mental Health. 1-1. DOI: 10.1002/9781118960608.Cbm00033  0.01
2015 Suzuki K, Whitman WB. Thermoleophilia class. nov. Criminal Behaviour and Mental Health. 1-4. DOI: 10.1002/9781118960608.Cbm00008  0.01
2015 Ludwig W, Euzéby JP, Whitman WB. Nitriliruptoria class. nov. Criminal Behaviour and Mental Health. 1-1. DOI: 10.1002/9781118960608.Cbm00006  0.01
2015 Ludwig W, Euzéby JP, Whitman WB. Road map of the phyla Bacteroidetes , Spirochaetes , Tenericutes ( Mollicutes ), Acidobacteria , Fibrobacteres , Fusobacteria , Dictyoglomi , Gemmatimonadetes , Lentisphaerae , Verrucomicrobia , Chlamydiae , and Planctomycetes Bergey's Manual of Systematics of Archaea and Bacteria. 1-24. DOI: 10.1002/9781118960608.Bm00027  0.01
2015 Ludwig W, Schleifer K, Whitman WB. Revised road map to the phylum Firmicutes Bergey's Manual of Systematics of Archaea and Bacteria. 1-16. DOI: 10.1002/9781118960608.Bm00025  0.01
2015 Medeiros PM, Seidel M, Dittmar T, Whitman WB, Moran MA. Drought-induced variability in dissolved organic matter composition in a marsh-dominated estuary Geophysical Research Letters. 42: 6446-6453. DOI: 10.1002/2015Gl064653  1
2014 Lin YT, Hu HW, Whitman WB, Coleman DC, Chiu CY. Comparison of soil bacterial communities in a natural hardwood forest and coniferous plantations in perhumid subtropical low mountains. Botanical Studies. 55: 50. PMID 28510940 DOI: 10.1186/S40529-014-0050-X  1
2014 Kyrpides NC, Woyke T, Eisen JA, Garrity G, Lilburn TG, Beck BJ, Whitman WB, Hugenholtz P, Klenk HP. Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project. Standards in Genomic Sciences. 9: 1278-84. PMID 25197443 DOI: 10.4056/Sigs.5068949  1
2014 Yarza P, Yilmaz P, Pruesse E, Glöckner FO, Ludwig W, Schleifer KH, Whitman WB, Euzéby J, Amann R, Rosselló-Móra R. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nature Reviews. Microbiology. 12: 635-45. PMID 25118885 DOI: 10.1038/Nrmicro3330  1
2014 Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, ... ... Whitman WB, et al. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. Plos Biology. 12: e1001920. PMID 25093819 DOI: 10.1371/Journal.Pbio.1001920  1
2014 Siddiqui MA, Rashid N, Ayyampalayam S, Whitman WB. Draft Genome Sequence of Geobacillus thermopakistaniensis Strain MAS1. Genome Announcements. 2. PMID 24903880 DOI: 10.1128/Genomea.00559-14  0.01
2014 Sarmiento F, Long F, Cann I, Whitman WB. Diversity of the DNA replication system in the Archaea domain. Archaea (Vancouver, B.C.). 2014: 675946. PMID 24790526 DOI: 10.1155/2014/675946  1
2014 Liu Y, Long F, Wang L, Söll D, Whitman WB. The putative tRNA 2-thiouridine synthetase Ncs6 is an essential sulfur carrier in Methanococcus maripaludis. Febs Letters. 588: 873-7. PMID 24530533 DOI: 10.1016/J.Febslet.2014.01.065  1
2014 Maitra N, Whitman WB, Ayyampalayam S, Samanta S, Sarkar K, Bandopadhyay C, Aftabuddin M, Sharma AP, Manna SK. Draft Genome Sequence of the Aquatic Phosphorus-Solubilizing and -Mineralizing Bacterium Bacillus sp. Strain CPSM8. Genome Announcements. 2. PMID 24482525 DOI: 10.1128/Genomea.01265-13  0.01
2014 Bullock HA, Reisch CR, Burns AS, Moran MA, Whitman WB. Regulatory and functional diversity of methylmercaptopropionate coenzyme A ligases from the dimethylsulfoniopropionate demethylation pathway in Ruegeria pomeroyi DSS-3 and other proteobacteria. Journal of Bacteriology. 196: 1275-85. PMID 24443527 DOI: 10.1128/Jb.00026-14  1
2014 Gutierrez T, Rhodes G, Mishamandani S, Berry D, Whitman WB, Nichols PD, Semple KT, Aitken MD. Polycyclic aromatic hydrocarbon degradation of phytoplankton-associated Arenibacter spp. and description of Arenibacter algicola sp. nov., an aromatic hydrocarbon-degrading bacterium. Applied and Environmental Microbiology. 80: 618-28. PMID 24212584 DOI: 10.1128/Aem.03104-13  1
2014 Lin YT, Tang SL, Pai CW, Whitman WB, Coleman DC, Chiu CY. Changes in the soil bacterial communities in a cedar plantation invaded by moso bamboo. Microbial Ecology. 67: 421-9. PMID 24072077 DOI: 10.1007/S00248-013-0291-3  1
2014 Whitman WB. Chapter 1 - The Need for Change: Embracing the Genome Methods in Microbiology. 41: 1-12. DOI: 10.1016/Bs.Mim.2014.08.002  0.01
2013 Jangid K, Whitman WB, Condron LM, Turner BL, Williams MA. Soil bacterial community succession during long-term ecosystem development. Molecular Ecology. 22: 3415-24. PMID 24624422 DOI: 10.1111/Mec.12325  1
2013 Sarmiento F, Ellison CK, Whitman WB. Genetic confirmation of the role of sulfopyruvate decarboxylase in coenzyme M biosynthesis in Methanococcus maripaludis. Archaea (Vancouver, B.C.). 2013: 185250. PMID 24151448 DOI: 10.1155/2013/185250  1
2013 Reisch CR, Crabb WM, Gifford SM, Teng Q, Stoudemayer MJ, Moran MA, Whitman WB. Metabolism of dimethylsulphoniopropionate by Ruegeria pomeroyi DSS-3. Molecular Microbiology. 89: 774-91. PMID 23815737 DOI: 10.1111/Mmi.12314  1
2013 Tan D, Crabb WM, Whitman WB, Tong L. Crystal structure of DmdD, a crotonase superfamily enzyme that catalyzes the hydration and hydrolysis of methylthioacryloyl-CoA. Plos One. 8: e63870. PMID 23704947 DOI: 10.1371/Journal.Pone.0063870  0.01
2013 Sarmiento F, Mrázek J, Whitman WB. Genome-scale analysis of gene function in the hydrogenotrophic methanogenic archaeon Methanococcus maripaludis. Proceedings of the National Academy of Sciences of the United States of America. 110: 4726-31. PMID 23487778 DOI: 10.1073/Pnas.1220225110  1
2013 Sutcliffe IC, Trujillo ME, Whitman WB, Goodfellow M. A call to action for the International Committee on Systematics of Prokaryotes. Trends in Microbiology. 21: 51-2. PMID 23238020 DOI: 10.1016/J.Tim.2012.11.004  1
2013 Gutierrez T, Green DH, Nichols PD, Whitman WB, Semple KT, Aitken MD. Polycyclovorans algicola gen. nov., sp. nov., an aromatic-hydrocarbon-degrading marine bacterium found associated with laboratory cultures of marine phytoplankton. Applied and Environmental Microbiology. 79: 205-14. PMID 23087039 DOI: 10.1128/Aem.02833-12  1
2013 Jangid K, Whitman WB, Condron LM, Turner BL, Williams MA. Progressive and retrogressive ecosystem development coincide with soil bacterial community change in a dune system under lowland temperate rainforest in New Zealand Plant and Soil. 367: 235-247. DOI: 10.1007/S11104-013-1720-2  1
2012 Liu Y, Zhu X, Nakamura A, Orlando R, Söll D, Whitman WB. Biosynthesis of 4-thiouridine in tRNA in the methanogenic archaeon Methanococcus maripaludis. The Journal of Biological Chemistry. 287: 36683-92. PMID 22904325 DOI: 10.1074/Jbc.M112.405688  1
2012 Lie TJ, Costa KC, Lupa B, Korpole S, Whitman WB, Leigh JA. Essential anaplerotic role for the energy-converting hydrogenase Eha in hydrogenotrophic methanogenesis. Proceedings of the National Academy of Sciences of the United States of America. 109: 15473-8. PMID 22872868 DOI: 10.1073/Pnas.1208779109  1
2012 Liu Y, Beer LL, Whitman WB. Sulfur metabolism in archaea reveals novel processes. Environmental Microbiology. 14: 2632-44. PMID 22626264 DOI: 10.1111/J.1462-2920.2012.02783.X  1
2012 Moran MA, Reisch CR, Kiene RP, Whitman WB. Genomic insights into bacterial DMSP transformations. Annual Review of Marine Science. 4: 523-42. PMID 22457986 DOI: 10.1146/Annurev-Marine-120710-100827  1
2012 Liu Y, Beer LL, Whitman WB. Methanogens: a window into ancient sulfur metabolism. Trends in Microbiology. 20: 251-8. PMID 22406173 DOI: 10.1016/J.Tim.2012.02.002  1
2012 Gutierrez T, Green DH, Whitman WB, Nichols PD, Semple KT, Aitken MD. Algiphilus aromaticivorans gen. nov., sp. nov., an aromatic hydrocarbon-degrading bacterium isolated from a culture of the marine dinoflagellate Lingulodinium polyedrum, and proposal of Algiphilaceae fam. nov. International Journal of Systematic and Evolutionary Microbiology. 62: 2743-9. PMID 22228670 DOI: 10.1099/Ijs.0.033324-0  1
2012 Schuller DJ, Reisch CR, Moran MA, Whitman WB, Lanzilotta WN. Structures of dimethylsulfoniopropionate-dependent demethylase from the marine organism Pelagabacter ubique. Protein Science : a Publication of the Protein Society. 21: 289-98. PMID 22162093 DOI: 10.1002/Pro.2015  1
2012 Gutierrez T, Nichols PD, Whitman WB, Aitken MD. Porticoccus hydrocarbonoclasticus sp. nov., an aromatic hydrocarbon-degrading bacterium identified in laboratory cultures of marine phytoplankton. Applied and Environmental Microbiology. 78: 628-37. PMID 22139001 DOI: 10.1128/Aem.06398-11  1
2012 Lin YT, Whitman WB, Coleman DC, Chiu CY. Comparison of soil bacterial communities between coastal and inland forests in a subtropical area Applied Soil Ecology. 60: 49-55. DOI: 10.1016/J.Apsoil.2012.03.001  1
2012 Ludwig W, Euzéby JP, Whitman WB. Taxonomic outline of the phylum Actinobacteria Bergey's Manual of Systematics of Archaea and Bacteria. 29-31. DOI: 10.1007/978-0-387-68233-4_2  0.01
2011 Reisch CR, Moran MA, Whitman WB. Bacterial Catabolism of Dimethylsulfoniopropionate (DMSP). Frontiers in Microbiology. 2: 172. PMID 21886640 DOI: 10.3389/Fmicb.2011.00172  1
2011 Lin YT, Whitman WB, Coleman DC, Chiu CY. Molecular characterization of soil bacterial community in a Perhumid, low mountain forest Microbes and Environments. 26: 325-331. PMID 21727759 DOI: 10.1264/Jsme2.Me11114  1
2011 Garcia SL, Jangid K, Whitman WB, Das KC. Transition of microbial communities during the adaption to anaerobic digestion of carrot waste Bioresource Technology. 102: 7249-7256. PMID 21620691 DOI: 10.1016/J.Biortech.2011.04.098  1
2011 Reisch CR, Stoudemayer MJ, Varaljay VA, Amster IJ, Moran MA, Whitman WB. Novel pathway for assimilation of dimethylsulphoniopropionate widespread in marine bacteria Nature. 473: 208-211. PMID 21562561 DOI: 10.1038/Nature10078  1
2011 Sarmiento F, Leigh JA, Whitman WB. Genetic systems for hydrogenotrophic methanogens. Methods in Enzymology. 494: 43-73. PMID 21402209 DOI: 10.1016/B978-0-12-385112-3.00003-2  1
2011 Lin YT, Jangid K, Whitman WB, Coleman DC, Chiu CY. Change in Bacterial Community Structure in Response to Disturbance of Natural Hardwood and Secondary Coniferous Forest Soils in Central Taiwan Microbial Ecology. 61: 429-437. PMID 20878522 DOI: 10.1007/S00248-010-9748-9  1
2011 Jangid K, Williams MA, Franzluebbers AJ, Schmidt TM, Coleman DC, Whitman WB. Land-use history has a stronger impact on soil microbial community composition than aboveground vegetation and soil properties Soil Biology and Biochemistry. 43: 2184-2193. DOI: 10.1016/J.Soilbio.2011.06.022  1
2011 Lin YT, Jangid K, Whitman WB, Coleman DC, Chiu CY. Soil bacterial communities in native and regenerated perhumid montane forests Applied Soil Ecology. 47: 111-118. DOI: 10.1016/J.Apsoil.2010.11.008  1
2011 Mesbah NM, Whitman WB, Mesbah M. Determination of the G+C Content of Prokaryotes Methods in Microbiology. 38: 299-324. DOI: 10.1016/B978-0-12-387730-7.00014-0  1
2010 Liu Y, Sieprawska-Lupa M, Whitman WB, White RH. Cysteine is not the sulfur source for iron-sulfur cluster and methionine biosynthesis in the methanogenic archaeon Methanococcus maripaludis. The Journal of Biological Chemistry. 285: 31923-9. PMID 20709756 DOI: 10.1074/Jbc.M110.152447  1
2010 Philippot L, Andersson SG, Battin TJ, Prosser JI, Schimel JP, Whitman WB, Hallin S. The ecological coherence of high bacterial taxonomic ranks. Nature Reviews. Microbiology. 8: 523-9. PMID 20531276 DOI: 10.1038/Nrmicro2367  1
2010 Liu Y, White RH, Whitman WB. Methanococci use the diaminopimelate aminotransferase (DapL) pathway for lysine biosynthesis. Journal of Bacteriology. 192: 3304-10. PMID 20418392 DOI: 10.1128/Jb.00172-10  1
2010 Lin YT, Huang YJ, Tang SL, Whitman WB, Coleman DC, Chiu CY. Bacterial community diversity in undisturbed perhumid montane forest soils in Taiwan. Microbial Ecology. 59: 369-78. PMID 19727930 DOI: 10.1007/S00248-009-9574-0  1
2010 Jangid K, Williams MA, Franzluebbers AJ, Blair JM, Coleman DC, Whitman WB. Development of soil microbial communities during tallgrass prairie restoration Soil Biology and Biochemistry. 42: 302-312. DOI: 10.1016/J.Soilbio.2009.11.008  1
2010 Lin YT, Lin CP, Chaw SM, Whitman WB, Coleman DC, Chiu CY. Bacterial community of very wet and acidic subalpine forest and fire-induced grassland soils Plant and Soil. 332: 417-427. DOI: 10.1007/S11104-010-0308-3  1
2009 Birney E, Hudson TJ, Green ED, Gunter C, Eddy S, Rogers J, Harris JR, Ehrlich SD, Apweiler R, Austin CP, Berglund L, Bobrow M, Bountra C, Brookes AJ, ... ... Whitman WB, et al. Prepublication data sharing. Nature. 461: 168-70. PMID 19741685 DOI: 10.1038/461168A  1
2009 Pikuta EV, Hoover RB, Marsic D, Whitman WB, Lupa B, Tang J, Krader P. Proteocatella sphenisci gen. nov., sp. nov., a psychrotolerant, spore-forming anaerobe isolated from penguin guano. International Journal of Systematic and Evolutionary Microbiology. 59: 2302-7. PMID 19620379 DOI: 10.1099/Ijs.0.002816-0  1
2009 Pikuta EV, Hoover RB, Bej AK, Marsic D, Whitman WB, Krader P. Spirochaeta dissipatitropha sp. nov., an alkaliphilic, obligately anaerobic bacterium, and emended description of the genus Spirochaeta Ehrenberg 1835. International Journal of Systematic and Evolutionary Microbiology. 59: 1798-804. PMID 19578151 DOI: 10.1099/00207713-59-10-2646-C  1
2009 Anderson I, Ulrich LE, Lupa B, Susanti D, Porat I, Hooper SD, Lykidis A, Sieprawska-Lupa M, Dharmarajan L, Goltsman E, Lapidus A, Saunders E, Han C, Land M, Lucas S, ... ... Whitman WB, et al. Genomic characterization of methanomicrobiales reveals three classes of methanogens. Plos One. 4: e5797. PMID 19495416 DOI: 10.1371/Journal.Pone.0005797  1
2009 Anderson IJ, Dharmarajan L, Rodriguez J, Hooper S, Porat I, Ulrich LE, Elkins JG, Mavromatis K, Sun H, Land M, Lapidus A, Lucas S, Barry K, Huber H, Zhulin IB, ... Whitman WB, et al. The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota. Bmc Genomics. 10: 145. PMID 19341479 DOI: 10.1186/1471-2164-10-145  1
2009 Lasher C, Dyszynski G, Everett K, Edmonds J, Ye W, Sheldon W, Wang S, Joye SB, Moran MA, Whitman WB. The diverse bacterial community in intertidal, anaerobic sediments at Sapelo Island, Georgia. Microbial Ecology. 58: 244-61. PMID 19212699 DOI: 10.1007/S00248-008-9481-9  1
2009 Liu Y, Guo L, Guo R, Wong RL, Hernandez H, Hu J, Chu Y, Amster IJ, Whitman WB, Huang L. The sac10b homolog in methanococcus maripaludis binds DNA at specific sites Journal of Bacteriology. 191: 2315-2329. PMID 19168623 DOI: 10.1128/Jb.01534-08  1
2009 Anderson IJ, Sieprawska-Lupa M, Goltsman E, Lapidus A, Copeland A, del Rio TG, Tice H, Dalin E, Barry K, Pitluck S, Hauser Lr, Land M, Lucas S, Richardson P, Whitman WB, et al. Complete genome sequence of methanocorpusculum labreanum type strain Z Standards in Genomic Sciences. 1: 197-203. DOI: 10.4056/Sigs.35575  1
2009 Anderson IJ, Sieprawska-Lupa M, Lapidus A, Nolan M, Copeland A, Del Rio TG, Tice H, Dalin E, Barry K, Saunders E, Han C, Brettin T, Detter JC, Bruce D, Mikhailova N, ... ... Whitman WB, et al. Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1 Standards in Genomic Sciences. 1: 189-196. DOI: 10.4056/Sigs.32535  1
2009 Ludwig W, Schleifer K, Whitman WB. Taxonomic outline of the phylum Firmicutes Bergey's Manual of Systematics of Archaea and Bacteria. 15-17. DOI: 10.1007/978-0-387-68489-5_2  0.01
2008 Lupa B, Hendrickson EL, Leigh JA, Whitman WB. Formate-dependent H2 production by the mesophilic methanogen Methanococcus maripaludis. Applied and Environmental Microbiology. 74: 6584-90. PMID 18791018 DOI: 10.1128/Aem.01455-08  1
2008 Liu Y, Whitman WB. Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea. Annals of the New York Academy of Sciences. 1125: 171-189. PMID 18378594 DOI: 10.1196/Annals.1419.019  1
2008 Tarlera S, Jangid K, Ivester AH, Whitman WB, Williams MA. Microbial community succession and bacterial diversity in soils during 77,000 years of ecosystem development. Fems Microbiology Ecology. 64: 129-40. PMID 18328082 DOI: 10.1111/J.1574-6941.2008.00444.X  1
2008 Anderson I, Rodriguez J, Susanti D, Porat I, Reich C, Ulrich LE, Elkins JG, Mavromatis K, Lykidis A, Kim E, Thompson LS, Nolan M, Land M, Copeland A, Lapidus A, ... ... Whitman W, et al. Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction. Journal of Bacteriology. 190: 2957-65. PMID 18263724 DOI: 10.1128/Jb.01949-07  1
2008 Hendrickson EL, Liu Y, Rosas-Sandoval G, Porat I, Söll D, Whitman WB, Leigh JA. Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate. Journal of Bacteriology. 190: 2198-205. PMID 18203827 DOI: 10.1128/Jb.01805-07  1
2008 Upchurch R, Chiu CY, Everett K, Dyszynski G, Coleman DC, Whitman WB. Differences in the composition and diversity of bacterial communities from agricultural and forest soils Soil Biology and Biochemistry. 40: 1294-1305. DOI: 10.1016/J.Soilbio.2007.06.027  1
2007 Pikuta EV, Marsic D, Itoh T, Bej AK, Tang J, Whitman WB, Ng JD, Garriott OK, Hoover RB. Thermococcus thioreducens sp. nov., a novel hyperthermophilic, obligately sulfur-reducing archaeon from a deep-sea hydrothermal vent. International Journal of Systematic and Evolutionary Microbiology. 57: 1612-8. PMID 17625204 DOI: 10.1099/Ijs.0.65057-0  1
2007 Lee YJ, Dashti M, Prange A, Rainey FA, Rohde M, Whitman WB, Wiegel J. Thermoanaerobacter sulfurigignens sp. nov., an anaerobic thermophilic bacterium that reduces 1 M thiosulfate to elemental sulfur and tolerates 90 mM sulfite. International Journal of Systematic and Evolutionary Microbiology. 57: 1429-34. PMID 17625170 DOI: 10.1099/Ijs.0.64748-0  1
2007 Hendrickson EL, Haydock AK, Moore BC, Whitman WB, Leigh JA. Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic Archaea. Proceedings of the National Academy of Sciences of the United States of America. 104: 8930-4. PMID 17502615 DOI: 10.1073/Pnas.0701157104  1
2007 Sokolova T, Hanel J, Onyenwoke RU, Reysenbach A-, Banta A, Geyer R, González JM, Whitman WB, Wiegel J. Novel chemolithotrophic, thermophilic, anaerobic bacteria Thermolithobacter ferrireducens gen. nov., sp. nov. and Thermolithobacter carboxydivorans sp. nov. Extremophiles. 11: 145-157. PMID 17021657 DOI: 10.1007/S00792-006-0022-5  1
2006 Yuan J, Palioura S, Salazar JC, Su D, O'Donoghue P, Hohn MJ, Cardoso AM, Whitman WB, Söll D. RNA-dependent conversion of phosphoserine forms selenocysteine in eukaryotes and archaea. Proceedings of the National Academy of Sciences of the United States of America. 103: 18923-7. PMID 17142313 DOI: 10.1073/Pnas.0609703104  1
2006 Pikuta EV, Itoh T, Krader P, Tang J, Whitman WB, Hoover RB. Anaerovirgula multivorans gen. nov., sp. nov., a novel spore-forming, alkaliphilic anaerobe isolated from Owens Lake, California, USA. International Journal of Systematic and Evolutionary Microbiology. 56: 2623-9. PMID 17082402 DOI: 10.1099/Ijs.0.64198-0  1
2006 Howard EC, Henriksen JR, Buchan A, Reisch CR, Bürgmann H, Welsh R, Ye W, González JM, Mace K, Joye SB, Kiene RP, Whitman WB, Moran MA. Bacterial taxa that limit sulfur flux from the ocean. Science (New York, N.Y.). 314: 649-52. PMID 17068264 DOI: 10.1126/Science.1130657  1
2006 Porat I, Sieprawska-Lupa M, Teng Q, Bohanon FJ, White RH, Whitman WB. Biochemical and genetic characterization of an early step in a novel pathway for the biosynthesis of aromatic amino acids and p-aminobenzoic acid in the archaeon Methanococcus maripaludis. Molecular Microbiology. 62: 1117-31. PMID 17010158 DOI: 10.1111/J.1365-2958.2006.05426.X  1
2006 Lee YJ, Romanek CS, Mills GL, Davis RC, Whitman WB, Wiegel J. Gracilibacter thermotolerans gen. nov., sp. nov., an anaerobic, thermotolerant bacterium from a constructed wetland receiving acid sulfate water. International Journal of Systematic and Evolutionary Microbiology. 56: 2089-93. PMID 16957104 DOI: 10.1099/Ijs.0.64040-0  1
2006 Pikuta EV, Hoover RB, Bej AK, Marsic D, Whitman WB, Krader PE, Tang J. Trichococcus patagoniensis sp. nov., a facultative anaerobe that grows at -5 degrees C, isolated from penguin guano in Chilean Patagonia. International Journal of Systematic and Evolutionary Microbiology. 56: 2055-62. PMID 16957099 DOI: 10.1099/Ijs.0.64225-0  1
2006 Kendall MM, Liu Y, Sieprawska-Lupa M, Stetter KO, Whitman WB, Boone DR. Methanococcus aeolicus sp. nov., a mesophilic, methanogenic archaeon from shallow and deep marine sediments. International Journal of Systematic and Evolutionary Microbiology. 56: 1525-9. PMID 16825624 DOI: 10.1099/Ijs.0.64216-0  1
2006 Xia Q, Hendrickson EL, Zhang Y, Wang T, Taub F, Moore BC, Porat I, Whitman WB, Hackett M, Leigh JA. Quantitative proteomics of the archaeon Methanococcus maripaludis validated by microarray analysis and real time PCR. Molecular & Cellular Proteomics : McP. 5: 868-81. PMID 16489187 DOI: 10.1074/Mcp.M500369-Mcp200  1
2006 Porat I, Kim W, Hendrickson EL, Xia Q, Zhang Y, Wang T, Taub F, Moore BC, Anderson IJ, Hackett M, Leigh JA, Whitman WB. Disruption of the operon encoding Ehb hydrogenase limits anabolic CO2 assimilation in the archaeon Methanococcus maripaludis. Journal of Bacteriology. 188: 1373-80. PMID 16452419 DOI: 10.1128/Jb.188.4.1373-1380.2006  1
2005 Sauerwald A, Zhu W, Major TA, Roy H, Palioura S, Jahn D, Whitman WB, Yates JR, Ibba M, Söll D. RNA-dependent cysteine biosynthesis in archaea. Science (New York, N.Y.). 307: 1969-72. PMID 15790858 DOI: 10.1126/Science.1108329  1
2005 Coleman DC, Whitman WB. Linking species richness, biodiversity and ecosystem function in soil systems Pedobiologia. 49: 479-497. DOI: 10.1016/J.Pedobi.2005.05.006  1
2004 Moran MA, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C, Brinkac L, Lewis M, Johri S, Weaver B, Pai G, et al. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature. 432: 910-3. PMID 15602564 DOI: 10.1038/Nature03170  1
2004 Hendrickson EL, Kaul R, Zhou Y, Bovee D, Chapman P, Chung J, Conway de Macario E, Dodsworth JA, Gillett W, Graham DE, Hackett M, Haydock AK, Kang A, Land ML, Levy R, ... ... Whitman WB, et al. Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis. Journal of Bacteriology. 186: 6956-69. PMID 15466049 DOI: 10.1128/Jb.186.20.6956-6969.2004  1
2004 Haydock AK, Porat I, Whitman WB, Leigh JA. Continuous culture of Methanococcus maripaludis under defined nutrient conditions. Fems Microbiology Letters. 238: 85-91. PMID 15336407 DOI: 10.1016/J.Femsle.2004.07.021  1
2004 Porat I, Waters BW, Teng Q, Whitman WB. Two biosynthetic pathways for aromatic amino acids in the archaeon Methanococcus maripaludis Journal of Bacteriology. 186: 4940-4950. PMID 15262931 DOI: 10.1128/Jb.186.15.4940-4950.2004  1
2004 Lin W, Whitman WB. The importance of porE and porF in the anabolic pyruvate oxidoreductase of Methanococcus maripaludis. Archives of Microbiology. 181: 68-73. PMID 14655002 DOI: 10.1007/S00203-003-0629-1  0.01
2003 Farahi K, Whitman WB, Kraemer ET. RED-T: utilizing the Ratios of Evolutionary Distances for determination of alternative phylogenetic events. Bioinformatics (Oxford, England). 19: 2152-4. PMID 14594724 DOI: 10.1093/Bioinformatics/Btg284  1
2003 Pikuta EV, Hoover RB, Bej AK, Marsic D, Whitman WB, Cleland D, Krader P. Desulfonatronum thiodismutans sp. nov., a novel alkaliphilic, sulfate-reducing bacterium capable of lithoautotrophic growth. International Journal of Systematic and Evolutionary Microbiology. 53: 1327-32. PMID 13130014 DOI: 10.1099/Ijs.0.02598-0  1
2003 González JM, Covert JS, Whitman WB, Henriksen JR, Mayer F, Scharf B, Schmitt R, Buchan A, Fuhrman JA, Kiene RP, Moran MA. Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments. International Journal of Systematic and Evolutionary Microbiology. 53: 1261-9. PMID 13130004 DOI: 10.1099/Ijs.0.02491-0  1
2003 Hoover RB, Pikuta EV, Bej AK, Marsic D, Whitman WB, Tang J, Krader P. Spirochaeta americana sp. nov., a new haloalkaliphilic, obligately anaerobic spirochaete isolated from soda Mono Lake in California. International Journal of Systematic and Evolutionary Microbiology. 53: 815-21. PMID 12807206 DOI: 10.1099/Ijs.0.02535-0  1
2003 Lin WC, Yang YL, Whitman WB. The anabolic pyruvate oxidoreductase from Methanococcus maripaludis. Archives of Microbiology. 179: 444-56. PMID 12743680 DOI: 10.1007/S00203-003-0554-3  0.01
2003 Pikuta EV, Hoover RB, Bej AK, Marsic D, Detkova EN, Whitman WB, Krader P. Tindallia californiensis sp. nov., a new anaerobic, haloalkaliphilic, spore-forming acetogen isolated from Mono Lake in California. Extremophiles : Life Under Extreme Conditions. 7: 327-34. PMID 12728359 DOI: 10.1007/S00792-003-0326-7  1
2003 Singleton DR, Furlong MA, Peacock AD, White DC, Coleman DC, Whitman WB. Solirubrobacter pauli gen. nov., sp. nov., a mesophilic bacterium within the Rubrobacteridae related to common soil clones. International Journal of Systematic and Evolutionary Microbiology. 53: 485-90. PMID 12710617 DOI: 10.1099/Ijs.0.02438-0  1
2003 Brigmon RL, Furlong M, Whitman WB. Identification of Thiothrix unzii in two distinct ecosystems. Letters in Applied Microbiology. 36: 88-91. PMID 12535127 DOI: 10.1046/J.1472-765X.2003.01256.X  1
2003 Singleton DR, Hendrix PF, Coleman DC, Whitman WB. Identification of uncultured bacteria tightly associated with the intestine of the earthworm Lumbricus rubellus (Lumbricidae; Oligochaeta) Soil Biology and Biochemistry. 35: 1547-1555. DOI: 10.1016/S0038-0717(03)00244-X  1
2002 Yang YL, Glushka JN, Whitman WB. Intracellular pyruvate flux in the methane-producing archaeon Methanococcus maripaludis. Archives of Microbiology. 178: 493-8. PMID 12420171 DOI: 10.1007/S00203-002-0480-9  0.01
2002 Fahlman A, Lin WC, Whitman WB, Kayar SR. Modulation of decompression sickness risk in pigs with caffeine during H(2) biochemical decompression. Journal of Applied Physiology (Bethesda, Md. : 1985). 93: 1583-9. PMID 12381741 DOI: 10.1152/Japplphysiol.00349.2002  0.01
2002 Stackebrandt E, Frederiksen W, Garrity GM, Grimont PA, Kämpfer P, Maiden MC, Nesme X, Rosselló-Mora R, Swings J, Trüper HG, Vauterin L, Ward AC, Whitman WB. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. International Journal of Systematic and Evolutionary Microbiology. 52: 1043-7. PMID 12054223 DOI: 10.1099/00207713-52-3-1043  1
2002 Furlong MA, Singleton DR, Coleman DC, Whitman WB. Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus. Applied and Environmental Microbiology. 68: 1265-79. PMID 11872477 DOI: 10.1128/Aem.68.3.1265-1279.2002  1
2001 Stathopoulos C, Kim W, Li T, Anderson I, Deutsch B, Palioura S, Whitman W, Söll D. Cysteinyl-tRNA synthetase is not essential for viability of the archaeon Methanococcus maripaludis. Proceedings of the National Academy of Sciences of the United States of America. 98: 14292-7. PMID 11717392 DOI: 10.1073/Pnas.201540498  1
2001 Singleton DR, Furlong MA, Rathbun SL, Whitman WB. Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Applied and Environmental Microbiology. 67: 4374-6. PMID 11526051 DOI: 10.1128/Aem.67.9.4374-4376.2001  1
1999 Li T, Graham DE, Stathopoulos C, Haney PJ, Kim HS, Vothknecht U, Kitabatake M, Hong KW, Eggertsson G, Curnow AW, Lin W, Celic I, Whitman W, Söll D. Cysteinyl-tRNA formation: the last puzzle of aminoacyl-tRNA synthesis. Febs Letters. 462: 302-6. PMID 10622715 DOI: 10.1016/S0014-5793(99)01550-1  1
1999 Zellner G, Boone DR, Keswani J, Whitman WB, Woese CR, Hagelstein A, Tindall BJ, Stackebrandt E. Reclassification of Methanogenium tationis and Methanogenium liminatans as Methanofollis tationis gen. nov., comb. nov. and Methanofollis liminatans comb. nov. and description of a new strain of Methanofollis liminatans. International Journal of Systematic Bacteriology. 49: 247-55. PMID 10028269 DOI: 10.1099/00207713-49-1-247  1
1998 Whitman WB, Coleman DC, Wiebe WJ. Prokaryotes: the unseen majority. Proceedings of the National Academy of Sciences of the United States of America. 95: 6578-83. PMID 9618454 DOI: 10.1073/Pnas.95.12.6578  1
1997 Selkov E, Maltsev N, Olsen GJ, Overbeek R, Whitman WB. A reconstruction of the metabolism of Methanococcus jannaschii from sequence data Gene. 197. PMID 9332394 DOI: 10.1016/S0378-1119(97)00307-7  1
1997 Tumbula DL, Teng Q, Bartlett MG, Whitman WB. Ribose biosynthesis and evidence for an alternative first step in the common aromatic amino acid pathway in Methanococcus maripaludis Journal of Bacteriology. 179: 6010-6013. PMID 9324245 DOI: 10.1128/Jb.179.19.6010-6013.1997  1
1988 Franklin MJ, Wiebe WJ, Whitman WB. Populations of methanogenic bacteria in a georgia salt marsh. Applied and Environmental Microbiology. 54: 1151-7. PMID 16347628 DOI: 10.1128/Aem.54.5.1151-1157.1988  1
1988 Shieh J, Mesbah M, Whitman WB. Pseudoauxotrophy of Methanococcus voltae for acetate, leucine, and isoleucine Journal of Bacteriology. 170: 4091-4096. PMID 3137212 DOI: 10.1128/Jb.170.9.4091-4096.1988  1
1988 Shieh J, Whitman WB. Autotrophic acetyl coenzyme A biosynthesis in Methanococcus maripaludis Journal of Bacteriology. 170: 3072-3079. PMID 3133359 DOI: 10.1128/Jb.170.7.3072-3079.1988  1
1987 Shieh JS, Whitman WB. Pathway of acetate assimilation in autotrophic and heterotrophic methanococci Journal of Bacteriology. 169: 5327-5329. PMID 3667534 DOI: 10.1128/Jb.169.11.5327-5329.1987  1
1987 Whitman WB, Wolfe RS. Inhibition by corrins of the ATP-dependent activation and CO2 reduction by the methylreductase system in Methanobacterium bryantii. Journal of Bacteriology. 169: 87-92. PMID 3098736 DOI: 10.1128/JB.169.1.87-92.1987  0.72
1985 Whitman WB, Wolfe RS. Activation of the methylreductase system from Methanobacterium bryantii by corrins. Journal of Bacteriology. 164: 165-72. PMID 3930464 DOI: 10.1128/jb.164.1.165-172.1985  0.72
1984 Whitman WB, Wolfe RS. Purification and analysis of cobamides of Methanobacterium bryantii by high-performance liquid chromatography. Analytical Biochemistry. 137: 261-5. PMID 6731805 DOI: 10.1016/0003-2697(84)90380-4  0.8
1983 Jones WJ, Whitman WB, Fields RD, Wolfe RS. Growth and plating efficiency of methanococci on agar media. Applied and Environmental Microbiology. 46: 220-6. PMID 16346342 DOI: 10.1128/Aem.46.1.220-226.1983  1
1983 Whitman WB, Wolfe RS. Activation of the methylreductase system from Methanobacterium bryantii by ATP. Journal of Bacteriology. 154: 640-9. PMID 6841312 DOI: 10.1128/JB.154.2.640-649.1983  0.48
1983 Wood AG, Redborg AH, Cue DR, Whitman WB, Konisky J. Complementation of argG and hisA mutations of Escherichia coli by DNA cloned from the archaebacterium Methanococcus voltae. Journal of Bacteriology. 156: 19-29. PMID 6352676 DOI: 10.1128/Jb.156.1.19-29.1983  0.01
1982 Ellefson WL, Whitman WB. The role of nickel in methanogenic bacteria. Basic Life Sciences. 19: 403-414. PMID 7066011 DOI: 10.1007/978-1-4684-4142-0_30  0.32
1982 Ellefson WL, Whitman WB, Wolfe RS. Nickel-containing factor F430: chromophore of the methylreductase of Methanobacterium. Proceedings of the National Academy of Sciences of the United States of America. 79: 3707-10. PMID 6954513 DOI: 10.1073/Pnas.79.12.3707  0.56
1982 Whitman WB, Ankwanda E, Wolfe RS. Nutrition and carbon metabolism of Methanococcus voltae. Journal of Bacteriology. 149: 852-63. PMID 6801012 DOI: 10.1128/JB.149.3.852-863.1982  0.92
1980 Whitman WB, Wolfe RS. Presence of nickel in factor F430 from Methanobacterium bryantii. Biochemical and Biophysical Research Communications. 92: 1196-201. PMID 7370029 DOI: 10.1016/0006-291X(80)90413-1  0.6
1980 Robison PD, Whitman WB, Waddill F, Riggs AF, Tabita FR. Isolation and sequence of the pyridoxal 5′-phosphate active-site peptide from Rhodospirillum rubrum ribulose-1,5-bisphosphate carboxylase/oxygenase Biochemistry. 19: 4848-4853. PMID 6775695  1
1979 Whitman WB, Colletti C, Tabita FR. Activation of spinach ribulose bisphosphate carboxylase by pyridoxal phosphate Febs Letters. 101: 249-252. PMID 446748 DOI: 10.1016/0014-5793(79)81018-2  1
1978 Tabita FR, Caruso P, Whitman W. Facile assay of enzymes unique to the Calvin cycle in intact cells, with special reference to ribulose 1,5-bisphosphate carboxylase Analytical Biochemistry. 84: 462-472. PMID 204219 DOI: 10.1016/0003-2697(78)90064-7  1
1978 Whitman WB, Tabita FR. Modification of Rhodospirillum rubrum ribulose bisphosphate carboxylase with pyridoxal phosphate. 1. Identification of a lysyl residue at the active site Biochemistry. 17: 1282-1287. PMID 26381 DOI: 10.1021/BI00600A023  1
1976 Whitman W, Tabita FR. Inhibition of D-ribulose 1,5-bisphosphate carboxylase by pyridoxal 5′-phosphate Biochemical and Biophysical Research Communications. 71: 1034-1039. PMID 823940 DOI: 10.1016/0006-291X(76)90758-0  1
1925 Bayley EC, Davis JC, Whitman W, Scott FH. The effect of pituitrin on blood and on lymph and urine production Proceedings of the Society For Experimental Biology and Medicine. 22: 312-314. DOI: 10.3181/00379727-22-151  1
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