Marguerite Langwig - Related publications

Affiliations: 
Marine Sciences University of Texas at Austin, Austin, Texas, U.S.A. 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Caicedo-Montoya C, Manzo-Ruiz M, Ríos-Estepa R. Pan-Genome of the Genus and Prioritization of Biosynthetic Gene Clusters With Potential to Produce Antibiotic Compounds. Frontiers in Microbiology. 12: 677558. PMID 34659136 DOI: 10.3389/fmicb.2021.677558   
2021 Parks DH, Chuvochina M, Rinke C, Mussig AJ, Chaumeil PA, Hugenholtz P. GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy. Nucleic Acids Research. PMID 34520557 DOI: 10.1093/nar/gkab776   
2021 Benton B, King S, Greenfield SR, Puthuveetil N, Reese AL, Duncan J, Marlow R, Tabron C, Pierola AE, Yarmosh DA, Combs PF, Riojas MA, Bagnoli J, Jacobs JL. The ATCC Genome Portal: Microbial Genome Reference Standards with Data Provenance. Microbiology Resource Announcements. 10: e0081821. PMID 34817215 DOI: 10.1128/MRA.00818-21   
2021 Roda-Garcia JJ, Haro-Moreno JM, Huschet LA, Rodriguez-Valera F, López-Pérez M. Phylogenomics of SAR116 Clade Reveals Two Subclades with Different Evolutionary Trajectories and an Important Role in the Ocean Sulfur Cycle. Msystems. 6: e0094421. PMID 34609172 DOI: 10.1128/mSystems.00944-21   
2021 Díaz R, Torres-Miranda A, Orellana G, Garrido D. Comparative Genomic Analysis of Novel subsp. Strains Reveals Functional Divergence in the Human Gut Microbiota. Microorganisms. 9. PMID 34576801 DOI: 10.3390/microorganisms9091906   
2021 Li R, Wang X, Bian C, Gao Z, Zhang Y, Jiang W, Wang M, You X, Cheng L, Pan X, Yang J, Shi Q. Whole-Genome Sequencing of Reveals Phylogenetic Evolution and Immunological Variances in Various Fishes. Frontiers in Genetics. 12: 736500. PMID 34675964 DOI: 10.3389/fgene.2021.736500   
2021 Ma X, Olsen JL, Reusch TBH, Procaccini G, Kudrna D, Williams M, Grimwood J, Rajasekar S, Jenkins J, Schmutz J, Van de Peer Y. Improved chromosome-level genome assembly and annotation of the seagrass, (eelgrass). F1000research. 10: 289. PMID 34621505 DOI: 10.12688/f1000research.38156.1   
2021 Bian PP, Zhang Y, Jiang Y. Pan-genome: setting a new standard for high-quality reference genomes. Yi Chuan = Hereditas. 43: 1023-1037. PMID 34815206 DOI: 10.16288/j.yczz.21-214   
2021 Bao J, Wang R, Gao S, Wang Z, Fang Y, Wu L, Wang M. High-Quality Genome Sequence Resource of a Rice False Smut Fungus Isolate, UV-FJ-1. Phytopathology. PHYTO01210007A. PMID 34732059 DOI: 10.1094/PHYTO-01-21-0007-A   
2021 Martin R, Dreßler H, Hattab G, Hackl T, Fischer MG, Heider D. MOSGA 2: Comparative genomics and validation tools. Computational and Structural Biotechnology Journal. 19: 5504-5509. PMID 34712396 DOI: 10.1016/j.csbj.2021.09.024   
2021 Barber AE, Sae-Ong T, Kang K, Seelbinder B, Li J, Walther G, Panagiotou G, Kurzai O. Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection. Nature Microbiology. 6: 1526-1536. PMID 34819642 DOI: 10.1038/s41564-021-00993-x   
2021 Liang Q, Liu C, Xu R, Song M, Zhou Z, Li H, Dai W, Yang M, Yu Y, Chen H. fIDBAC: A Platform for Fast Bacterial Genome Identification and Typing. Frontiers in Microbiology. 12: 723577. PMID 34733246 DOI: 10.3389/fmicb.2021.723577   
2021 Lan L, Shi P, Song H, Tang X, Zhou J, Yang J, Yang M, Xu J. De Novo Genome Assembly of Chinese Plateau Honeybee Unravels Intraspecies Genetic Diversity in the Eastern Honeybee, . Insects. 12. PMID 34680661 DOI: 10.3390/insects12100891   
2021 Berger C, Rückert C, Blom J, Rabaey K, Kalinowski J, Rosenbaum MA. Estimation of pathogenic potential of an environmental Pseudomonas aeruginosa isolate using comparative genomics. Scientific Reports. 11: 1370. PMID 33446769 DOI: 10.1038/s41598-020-80592-8   
2021 Bae Y, Lee S, Kim K, Lee HK, Kwon SK, Kim JF. Genome information of the cellulolytic soil actinobacterium Isoptericola dokdonensis DS-3 and comparative genomic analysis of the genus Isoptericola. Journal of Microbiology (Seoul, Korea). 59: 1010-1018. PMID 34724179 DOI: 10.1007/s12275-021-1452-6   
2021 Yates AD, Allen J, Amode RM, Azov AG, Barba M, Becerra A, Bhai J, Campbell LI, Carbajo Martinez M, Chakiachvili M, Chougule K, Christensen M, Contreras-Moreira B, Cuzick A, Da Rin Fioretto L, et al. Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. Nucleic Acids Research. PMID 34791415 DOI: 10.1093/nar/gkab1007   
2021 Nguyen NTT, Vincens P, Dufayard JF, Roest Crollius H, Louis A. Genomicus in 2022: comparative tools for thousands of genomes and reconstructed ancestors. Nucleic Acids Research. PMID 34792170 DOI: 10.1093/nar/gkab1091   
2021 Kiran K, Rawal HC, Dubey H, Jaswal R, Bhardwaj SC, Deshmukh R, Sharma TR. Genome-Wide Analysis of Four Pathotypes of Wheat Rust Pathogen () Reveals Structural Variations and Diversifying Selection. Journal of Fungi (Basel, Switzerland). 7. PMID 34575739 DOI: 10.3390/jof7090701   
2021 Huang Y, Escalona M, Morrison G, Marimuthu MPA, Nguyen O, Toffelmier E, Shaffer HB, Litt A. Reference genome assembly of the big berry Manzanita (Arctostaphylos glauca). The Journal of Heredity. PMID 34850036 DOI: 10.1093/jhered/esab071   
2021 Padhi EM, Ng JK, Mehinovic E, Sams EI, Turner TN. ACES: Analysis of Conservation with an Extensive list of Species. Bioinformatics (Oxford, England). PMID 34601580 DOI: 10.1093/bioinformatics/btab684   
2021 Bagci C, Bryant D, Cetinkaya B, Huson DH. Microbial Phylogenetic Context Using Phylogenetic Outlines. Genome Biology and Evolution. 13. PMID 34519776 DOI: 10.1093/gbe/evab213   
2021 Brinkman FSL, Winsor GL, Done RE, Filloux A, Francis VI, Goldberg JB, Greenberg EP, Han K, Hancock REW, Haney CH, Häußler S, Klockgether J, Lamont IL, Levesque RC, Lory S, et al. The Pseudomonas aeruginosa whole genome sequence: A 20th anniversary celebration. Advances in Microbial Physiology. 79: 25-88. PMID 34836612 DOI: 10.1016/bs.ampbs.2021.07.001   
2021 Jiang S, Du Q, Feng C, Ma L, Zhang Z. CompoDynamics: a comprehensive database for characterizing sequence composition dynamics. Nucleic Acids Research. PMID 34718745 DOI: 10.1093/nar/gkab979   
2021 R M, S I, Kv S, Kp S, T R, G S, K R. Genomic characterization of Enterobacter xiangfangensis STP-3: Application to real time petroleum oil sludge bioremediation. Microbiological Research. 253: 126882. PMID 34619415 DOI: 10.1016/j.micres.2021.126882   
2021 Oh J, Lee SG, Park C. PIC-Me: paralogs and isoforms classifier based on machine-learning approaches. Bmc Bioinformatics. 22: 311. PMID 34674638 DOI: 10.1186/s12859-021-04229-x   
2021 Fernando CE, LaForge JJ, Fields SD. Complete Genome Sequence of Strain ES-001, a Betaproteobacterium Associated with a Cellulolytic Soil Community. Microbiology Resource Announcements. 10: e0082821. PMID 34617787 DOI: 10.1128/MRA.00828-21   
2021 Hugaboom M, Beck ML, Carrubba KH, Chennupati DV, Gupta A, Liu Q, Reddy MK, Roque F, Hatmaker EA. Complete Mitochondrial Genome Sequences of Nine Aspergillus flavus Strains. Microbiology Resource Announcements. 10: e0097121. PMID 34761953 DOI: 10.1128/MRA.00971-21   
2021 Yan Q, Zhang S, Li S, Wang G, Zhang A, Jin T, Zhang Y, Lv Q, Xiao M, Sun Y, Li X, Cui S, Li R, Ma X, Wang C, et al. Cultivation and Genomic Characterization of the Bile Bacterial Species From Cholecystitis Patients. Frontiers in Microbiology. 12: 739621. PMID 34790179 DOI: 10.3389/fmicb.2021.739621   
2021 Pellicer J, Fernández P, Fay MF, Michálková E, Leitch IJ. Genome Size Doubling Arises From the Differential Repetitive DNA Dynamics in the Genus (Melanthiaceae). Frontiers in Genetics. 12: 726211. PMID 34552621 DOI: 10.3389/fgene.2021.726211   
2021 Jin YT, Ma C, Wang X, Wang SX, Zhang KY, Zheng WX, Deng Z, Wang J, Guo FB. Consistent Clustering Pattern of Prokaryotic Genes Based on Base Frequency at the Second Codon Position and its Association with Functional Category Preference. Interdisciplinary Sciences, Computational Life Sciences. PMID 34817803 DOI: 10.1007/s12539-021-00493-w   
2021 Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, et al. Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes. The New Phytologist. PMID 34797921 DOI: 10.1111/nph.17873   
2021 Muleta A, Tesfaye K, Assefa F, Greenlon A, Riely BK, Carrasquilla-Garcia N, Gai Y, Haileslassie T, Cook DR. Genomic diversity and distribution of Mesorhizobium nodulating chickpea (Cicer arietinum L.) from low pH soils of Ethiopia. Systematic and Applied Microbiology. 45: 126279. PMID 34839036 DOI: 10.1016/j.syapm.2021.126279   
2021 Baptista RP, Li Y, Sateriale A, Brooks KL, Tracey A, Sanders MJ, Ansell BRE, Jex AR, Cooper GW, Smith ED, Xiao R, Dumaine JE, Georgeson P, Pope B, Berriman M, et al. Long-read assembly and comparative evidence-based reanalysis of genome sequences reveals expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions. Genome Research. PMID 34764149 DOI: 10.1101/gr.275325.121   
2021 Tang M, He S, Gong X, Lü P, Taha RH, Chen K. High-Quality Chromosome-Level Genome Assembly of a Single With Resistance by a Combination of PacBio Long-Read Sequencing, Illumina Short-Read Sequencing, and Hi-C Sequencing. Frontiers in Genetics. 12: 718266. PMID 34603381 DOI: 10.3389/fgene.2021.718266   
2021 Shekhovtsov SV, Efremov YR, Poluboyarova TV, Peltek SE. Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida). Vavilovskii Zhurnal Genetiki I Selektsii. 25: 647-651. PMID 34782884 DOI: 10.18699/VJ21.073   
2021 Wright BW, Molloy MP, Jaschke PR. Overlapping genes in natural and engineered genomes. Nature Reviews. Genetics. PMID 34611352 DOI: 10.1038/s41576-021-00417-w   
2021 Wang Z, Zhang F, Liang Y, Zheng K, Gu C, Zhang W, Liu Y, Zhang X, Shao H, Jiang Y, Guo C, He H, Wang H, Sung YY, Mok WJ, et al. Genome and Ecology of a Novel Podovirus, ZP6, Representing a New Viral Genus, . Microbiology Spectrum. e0046321. PMID 34643440 DOI: 10.1128/Spectrum.00463-21   
2021 Tang D, Li Y, Tan D, Fu J, Tang Y, Lin J, Zhao R, Du H, Zhao Z. KCOSS: an ultra-fast k-mer counter for assembled genome analysis. Bioinformatics (Oxford, England). PMID 34849595 DOI: 10.1093/bioinformatics/btab797   
2021 Ke F, Vasseur L, Yi H, Yang L, Wei X, Wang B, Kang M. Gene flow, linked selection, and divergent sorting of ancient polymorphism shape genomic divergence landscape in a group of edaphic specialists. Molecular Ecology. PMID 34664755 DOI: 10.1111/mec.16226   
2021 Westfall AK, Telemeco RS, Grizante MB, Waits DS, Clark AD, Simpson DY, Klabacka RL, Sullivan AP, Perry GH, Sears MW, Cox CL, Cox RM, Gifford ME, John-Alder HB, Langkilde T, et al. A chromosome-level genome assembly for the eastern fence lizard (Sceloporus undulatus), a reptile model for physiological and evolutionary ecology. Gigascience. 10. PMID 34599334 DOI: 10.1093/gigascience/giab066   
2021 Huo D, Li H, Cai F, Guo X, Qiao Z, Wang W, Yu G, Li R. Genome Evolution of Filamentous Cyanobacterium Species: From Facultative Symbiosis to Free Living. Microorganisms. 9. PMID 34683336 DOI: 10.3390/microorganisms9102015   
2021 Tariq MU, Haseeb M, Aledhari M, Razzak R, Parizi RM, Saeed F. Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey. Ieee Access : Practical Innovations, Open Solutions. 9: 5497-5516. PMID 33537181 DOI: 10.1109/ACCESS.2020.3047588   
2021 Dai Z, Wang H, Yang S, Shen Q, Wang X, Zhou T, Feng Z, Zhang W. Identification and characterization of a novel bocaparvovirus in tufted deer (Elaphodus cephalophus) in China. Archives of Virology. PMID 34778930 DOI: 10.1007/s00705-021-05308-3   
2021 Filée J, Farhat S, Higuet D, Teysset L, Marie D, Thomas-Bulle C, Hourdez S, Jollivet D, Bonnivard E. Comparative genomic and transcriptomic analyses of transposable elements in polychaetous annelids highlight LTR retrotransposon diversity and evolution. Mobile Dna. 12: 24. PMID 34715903 DOI: 10.1186/s13100-021-00252-0   
2021 Hussain Z, Sun Y, Shah SH, Khan H, Ali S, Iqbal A, Zia MA, Ali SS. The dynamics of genome size and GC contents evolution in genus Nicotiana. Brazilian Journal of Biology = Revista Brasleira De Biologia. 83: e245372. PMID 34669791 DOI: 10.1590/1519-6984.245372   
2021 Zhou XJ, Li JT, Wang HL, Han JW, Zhang K, Dong SW, Zhang YZ, Ya HY, Cheng YW, Sun SS. The chromosome-scale genome assembly, annotation and evolution of Rhododendron henanense subsp. lingbaoense. Molecular Ecology Resources. PMID 34652864 DOI: 10.1111/1755-0998.13529   
2021 Lee BT, Barber GP, Benet-Pagès A, Casper J, Clawson H, Diekhans M, Fischer C, Gonzalez JN, Hinrichs AS, Lee CM, Muthuraman P, Nassar LR, Nguy B, Pereira T, Perez G, et al. The UCSC Genome Browser database: 2022 update. Nucleic Acids Research. PMID 34718705 DOI: 10.1093/nar/gkab959   
2021 Carter AB, Abruzzo LV, Hirschhorn JW, Jones D, Jordan DC, Nassiri M, Ogino S, Patel NR, Suciu CG, Temple-Smolkin RL, Zehir A, Roy S. Electronic Health Records and Genomics: Perspectives from the Association for Molecular Pathology Electronic Health Record (EHR) Interoperability for Clinical Genomics Data Working Group. The Journal of Molecular Diagnostics : Jmd. PMID 34656760 DOI: 10.1016/j.jmoldx.2021.09.009   
2021 Zhou J, Wu P, Xiong Z, Liu N, Zhao N, Ji M, Qiu Y, Yang B. Chromosome-Level Genome Assembly Reveals Significant Gene Expansion in the Toll and IMD Signaling Pathways of . Frontiers in Genetics. 12: 728418. PMID 34777464 DOI: 10.3389/fgene.2021.728418   
2021 Arias CF, Dikow RB, McMillan WO, De Leon LF. De novo genome assembly of the electric fish Brachyhypopomus occidentalis (Hypopomidae, Gymnotiformes). Genome Biology and Evolution. PMID 34581791 DOI: 10.1093/gbe/evab223