☰

Hidetoshi Urakawa, Ph.D - Publications

Affiliations: 
2010- Ecology and Environmental Studies Florida Gulf Coast University, Fort Myers, FL, United States 
Tree Info Similar researchers PubMed Report error

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Qin W, Wei SP, Zheng Y, Choi E, Li X, Johnston J, Wan X, Abrahamson B, Flinkstrom Z, Wang B, Li H, Hou L, Tao Q, Chlouber WW, Sun X, ... ... Urakawa H, et al. Ammonia-oxidizing bacteria and archaea exhibit differential nitrogen source preferences. Nature Microbiology. PMID 38297167 DOI: 10.1038/s41564-023-01593-7  0.525
2022 Urakawa H, Andrews GA, Lopez JV, Martens-Habbena W, Klotz MG, Stahl DA. Nitrosomonas supralitoralis sp. nov., an ammonia-oxidizing bacterium from beach sand in a supralittoral zone. Archives of Microbiology. 204: 560. PMID 35978059 DOI: 10.1007/s00203-022-03173-5  0.785
2020 Urakawa H, Hancock TL, Steele JH, Dahedl EK, Urakawa HE, Ndungu LK, Krausfeldt LE, Rosen BH, Lopez JV. Complete Genome Sequence of Microcystis aeruginosa FD4, Isolated from a Subtropical River in Southwest Florida. Microbiology Resource Announcements. 9. PMID 32943567 DOI: 10.1128/MRA.00813-20  0.705
2020 Qin W, Zheng Y, Zhao F, Wang Y, Urakawa H, Martens-Habbena W, Liu H, Huang X, Zhang X, Nakagawa T, Mende DR, Bollmann A, Wang B, Zhang Y, Amin SA, et al. Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea. The Isme Journal. PMID 32636492 DOI: 10.1038/S41396-020-0710-7  0.788
2020 Harvey NJ, ur Rehman Z, Leiknes T, Ghaffour N, Urakawa H, Missimer TM. Organic compounds and microbial assessment of a seawater reverse osmosis facility at Tampa Bay Water, USA Desalination. 496: 114735. DOI: 10.1016/J.Desal.2020.114735  0.405
2019 Hancock TL, Poulakis GR, Scharer RM, Tolley SG, Urakawa H. High-resolution molecular identification of smalltooth sawfish prey. Scientific Reports. 9: 18307. PMID 31797939 DOI: 10.1038/S41598-019-53931-7  0.445
2019 Urakawa H, Skutas J, Lopez JV. Draft Genome Sequence of sp. Strain APG5, a Betaproteobacterial Ammonia-Oxidizing Bacterium Isolated from Beach Sand. Microbiology Resource Announcements. 8. PMID 31123020 DOI: 10.1128/MRA.01573-18  0.733
2019 Sanchez FA, Vivian‐Rogers VR, Urakawa H. Tilapia recirculating aquaculture systems as a source of plant growth promoting bacteria Aquaculture Research. 50: 2054-2065. DOI: 10.1111/Are.14072  0.462
2019 Lopardo CR, Urakawa H. Performance and microbial diversity of bioreactors using polycaprolactone and polyhydroxyalkanoate as carbon source and biofilm carrier in a closed recirculating aquaculture system Aquaculture International. 27: 1251-1268. DOI: 10.1007/S10499-019-00383-5  0.398
2018 Kucherenko A, Herman JE, III EME, Urakawa H. Terrestrial Snake Environmental DNA Accumulation and Degradation Dynamics and its Environmental Application Herpetologica. 74: 38-49. DOI: 10.1655/Herpetologica-D-16-00088  0.408
2017 Qin W, Amin SA, Lundeen RA, Heal KR, Martens-Habbena W, Turkarslan S, Urakawa H, Costa KC, Hendrickson EL, Wang T, Beck DA, Tiquia-Arashiro SM, Taub F, Holmes AD, Vajrala N, et al. Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations. The Isme Journal. PMID 29053148 DOI: 10.1038/Ismej.2017.186  0.735
2017 Qin W, Heal KR, Ramdasi R, Kobelt JN, Martens-Habbena W, Bertagnolli AD, Amin SA, Walker CB, Urakawa H, Könneke M, Devol AH, Moffett JW, Armbrust EV, Jensen GJ, Ingalls AE, et al. Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminigenes sp. nov., Nitrosopumilus oxyclinae sp. nov., and Nitrosopumilus ureiphilus sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumarchaeota. International Journal of Systematic and Evolutionary Microbiology. PMID 29034851 DOI: 10.1099/Ijsem.0.002416  0.772
2017 Urakawa H, Bernhard AE. Wetland management using microbial indicators Ecological Engineering. 108: 456-476. DOI: 10.1016/J.Ecoleng.2017.07.022  0.416
2016 Sipos AJ, Urakawa H. Differential responses of nitrifying archaea and bacteria to methylene blue toxicity. Letters in Applied Microbiology. 62: 199-206. PMID 26661751 DOI: 10.1111/Lam.12534  0.376
2015 Garcia JC, Ketover RD, Loh AN, Parsons ML, Urakawa H. Influence of freshwater discharge on the microbial degradation processes of dissolved organic nitrogen in a subtropical estuary. Antonie Van Leeuwenhoek. 107: 613-32. PMID 25542211 DOI: 10.1007/S10482-014-0357-3  0.351
2015 Urakawa H, Garcia JC, Nielsen JL, Le VQ, Kozlowski JA, Stein LY, Lim CK, Pommerening-Röser A, Martens-Habbena W, Stahl DA, Klotz MG. Nitrosospira lacus sp. nov., a psychrotolerant, ammonia-oxidizing bacterium from sandy lake sediment. International Journal of Systematic and Evolutionary Microbiology. 65: 242-50. PMID 25336720 DOI: 10.1099/Ijs.0.070789-0  0.764
2014 Martens-Habbena W, Qin W, Horak RE, Urakawa H, Schauer AJ, Moffett JW, Armbrust EV, Ingalls AE, Devol AH, Stahl DA. The production of nitric oxide by marine ammonia-oxidizing archaea and inhibition of archaeal ammonia oxidation by a nitric oxide scavenger. Environmental Microbiology. PMID 25420929 DOI: 10.1111/1462-2920.12677  0.771
2014 Qin W, Amin SA, Martens-Habbena W, Walker CB, Urakawa H, Devol AH, Ingalls AE, Moffett JW, Armbrust EV, Stahl DA. Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation. Proceedings of the National Academy of Sciences of the United States of America. 111: 12504-9. PMID 25114236 DOI: 10.1073/Pnas.1324115111  0.785
2014 Urakawa H, Martens-Habbena W, Huguet C, de la Torre JR, Ingalls AE, Devol AH, Stahl DA. Ammonia availability shapes the seasonal distribution and activity of archaeal and bacterial ammonia oxidizers in the Puget Sound Estuary Limnology and Oceanography. 59: 1321-1335. DOI: 10.4319/Lo.2014.59.4.1321  0.759
2013 Garcia JC, Urakawa H, Le VQ, Stein LY, Klotz MG, Nielsen JL. Draft Genome Sequence of Nitrosospira sp. Strain APG3, a Psychrotolerant Ammonia-Oxidizing Bacterium Isolated from Sandy Lake Sediment. Genome Announcements. 1. PMID 24201205 DOI: 10.1128/Genomea.00930-13  0.473
2013 Urakawa H, Ali J, Ketover RDJ, Talmage SD, Garcia JC, Campbell IS, Loh AN, Parsons ML. Shifts of Bacterioplankton Metabolic Profiles along the Salinity Gradient in a Subtropical Estuary Isrn Oceanography. 2013: 1-12. DOI: 10.5402/2013/410814  0.316
2010 Walker CB, de la Torre JR, Klotz MG, Urakawa H, Pinel N, Arp DJ, Brochier-Armanet C, Chain PS, Chan PP, Gollabgir A, Hemp J, Hügler M, Karr EA, Könneke M, Shin M, et al. Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proceedings of the National Academy of Sciences of the United States of America. 107: 8818-23. PMID 20421470 DOI: 10.1073/Pnas.0913533107  0.763
2010 Urakawa H, Martens-Habbena W, Stahl DA. High abundance of ammonia-oxidizing Archaea in coastal waters, determined using a modified DNA extraction method. Applied and Environmental Microbiology. 76: 2129-35. PMID 20118363 DOI: 10.1128/Aem.02692-09  0.732
2010 Huguet C, Martens-Habbena W, Urakawa H, Stahl DA, Ingalls AE. Comparison of extraction methods for quantitative analysis of core and intact polar glycerol dialkyl glycerol tetraethers (GDGTs) in environmental samples Limnology and Oceanography: Methods. 8: 127-145. DOI: 10.4319/Lom.2010.8.127  0.715
2010 Huguet C, Urakawa H, Martens-Habbena W, Truxal L, Stahl DA, Ingalls AE. Changes in intact membrane lipid content of archaeal cells as an indication of metabolic status Organic Geochemistry. 41: 930-934. DOI: 10.1016/J.Orggeochem.2010.04.012  0.733
2009 Martens-Habbena W, Berube PM, Urakawa H, de la Torre JR, Stahl DA. Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature. 461: 976-9. PMID 19794413 DOI: 10.1038/Nature08465  0.769
2008 Iwai S, Kurisu F, Urakawa H, Yagi O, Kasuga I, Furumai H. Development of an oligonucleotide microarray to detect di- and monooxygenase genes for benzene degradation in soil. Fems Microbiology Letters. 285: 111-21. PMID 18547327 DOI: 10.1111/J.1574-6968.2008.01223.X  0.305
2008 Urakawa H, Matsumoto J, Inaba K, Tsuneda S. DNA microarray mediated transcriptional profiling of Nitrosomonas europaea in response to linear alkylbenzene sulfonates. Fems Microbiology Letters. 282: 166-73. PMID 18371069 DOI: 10.1111/J.1574-6968.2008.01111.X  0.307
2008 Urakawa H, Tajima Y, Numata Y, Tsuneda S. Low temperature decreases the phylogenetic diversity of ammonia-oxidizing archaea and bacteria in aquarium biofiltration systems. Applied and Environmental Microbiology. 74: 894-900. PMID 18065610 DOI: 10.1128/Aem.01529-07  0.393
2007 Tang J, Tao J, Urakawa H, Corander J. T-BAPS: a Bayesian statistical tool for comparison of microbial communities using terminal-restriction fragment length polymorphism (T-RFLP) data. Statistical Applications in Genetics and Molecular Biology. 6: Article30. PMID 18052913 DOI: 10.2202/1544-6115.1303  0.303
2007 Iwai S, Kurisu F, Urakawa H, Yagi O, Furumai H. Development of a 60-mer oligonucleotide microarray on the basis of benzene monooxygenase gene diversity. Applied Microbiology and Biotechnology. 75: 929-39. PMID 17351772 DOI: 10.1007/S00253-007-0877-0  0.368
2007 Urakawa H, Matsumoto J, Hoshino T, Tsuneda S. Direct Profiling of rRNA in Saline Wastewater Treatment Samples Using an Oligonucleotide Microarray Microbes and Environments. 22: 116-122. DOI: 10.1264/Jsme2.22.116  0.367
2006 Eyers L, Smoot JC, Smoot LM, Bugli C, Urakawa H, McMurry Z, Siripong S, El-Fantroussi S, Lambert P, Agathos SN, Stahl DA. Discrimination of shifts in a soil microbial community associated with TNT-contamination using a functional ANOVA of 16S rRNA hybridized to oligonucleotide microarrays. Environmental Science & Technology. 40: 5867-73. PMID 17051772 DOI: 10.1021/Es0609093  0.453
2006 Urakawa H, Maki H, Kawabata S, Fujiwara T, Ando H, Kawai T, Hiwatari T, Kohata K, Watanabe M. Abundance and population structure of ammonia-oxidizing bacteria that inhabit canal sediments receiving effluents from municipal wastewater treatment plants. Applied and Environmental Microbiology. 72: 6845-50. PMID 17021242 DOI: 10.1128/Aem.00807-06  0.393
2006 Urakawa H, Kurata S, Fujiwara T, Kuroiwa D, Maki H, Kawabata S, Hiwatari T, Ando H, Kawai T, Watanabe M, Kohata K. Characterization and quantification of ammonia-oxidizing bacteria in eutrophic coastal marine sediments using polyphasic molecular approaches and immunofluorescence staining. Environmental Microbiology. 8: 787-803. PMID 16623737 DOI: 10.1111/J.1462-2920.2005.00962.X  0.44
2006 Suzuki Y, Kojima S, Sasaki T, Suzuki M, Utsumi T, Watanabe H, Urakawa H, Tsuchida S, Nunoura T, Hirayama H, Takai K, Nealson KH, Horikoshi K. Host-symbiont relationships in hydrothermal vent gastropods of the genus Alviniconcha from the Southwest Pacific. Applied and Environmental Microbiology. 72: 1388-93. PMID 16461691 DOI: 10.1128/Aem.72.2.1388-1393.2006  0.361
2005 Kelly JJ, Siripong S, McCormack J, Janus LR, Urakawa H, El Fantroussi S, Noble PA, Sappelsa L, Rittmann BE, Stahl DA. DNA microarray detection of nitrifying bacterial 16S rRNA in wastewater treatment plant samples. Water Research. 39: 3229-38. PMID 16009395 DOI: 10.1016/J.Watres.2005.05.044  0.517
2005 Urakawa H, Dubilier N, Fujiwara Y, Cunningham DE, Kojima S, Stahl DA. Hydrothermal vent gastropods from the same family (Provannidae) harbour epsilon- and gamma-proteobacterial endosymbionts. Environmental Microbiology. 7: 750-4. PMID 15819856 DOI: 10.1111/J.1462-2920.2005.00753.X  0.608
2005 URAKAWA H, YOSHIDA T, NISHIMURA M, OHWADA K. Characterization of depth-related changes and site-specific differences of microbial communities in marine sediments using quinone profiles Fisheries Science. 71: 174-182. DOI: 10.1111/J.1444-2906.2005.00945.X  0.647
2003 Urakawa H, El Fantroussi S, Smidt H, Smoot JC, Tribou EH, Kelly JJ, Noble PA, Stahl DA. Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays. Applied and Environmental Microbiology. 69: 2848-56. PMID 12732557 DOI: 10.1128/Aem.69.5.2848-2856.2003  0.494
2003 El Fantroussi S, Urakawa H, Bernhard AE, Kelly JJ, Noble PA, Smidt H, Yershov GM, Stahl DA. Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays. Applied and Environmental Microbiology. 69: 2377-82. PMID 12676724 DOI: 10.1128/Aem.69.4.2377-2382.2003  0.534
2002 Koizumi Y, Kelly JJ, Nakagawa T, Urakawa H, El-Fantroussi S, Al-Muzaini S, Fukui M, Urushigawa Y, Stahl DA. Parallel characterization of anaerobic toluene- and ethylbenzene-degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization, and DNA microarray technology. Applied and Environmental Microbiology. 68: 3215-25. PMID 12088997 DOI: 10.1128/Aem.68.7.3215-3225.2002  0.558
2002 Urakawa H, Noble PA, El Fantroussi S, Kelly JJ, Stahl DA. Single-base-pair discrimination of terminal mismatches by using oligonucleotide microarrays and neural network analyses. Applied and Environmental Microbiology. 68: 235-44. PMID 11772632 DOI: 10.1128/Aem.68.1.235-244.2002  0.49
2002 Stahl DA, El Fantroussi S, Urakawa H, Noble P, Smidt H, Smoot J, Kelly J. DNA microchip based microbial monitoring of environmental systems Sae Technical Papers. DOI: 10.4271/2002-01-2452  0.418
2001 Urakawa H, Yoshida T, Nishimura M, Ohwada K. Characterization of depth-related population variation in microbial communities of a coastal marine sediment using 16S rDNA-based approaches and quinone profiling. Environmental Microbiology. 2: 542-54. PMID 11233162 DOI: 10.1046/J.1462-2920.2000.00137.X  0.661
2001 Urakawa H, Yoshida T, Nishimura M, Ohwada K. Characterization of microbial communities in marine surface sediments by terminal-restriction fragment length polymorphism (T-RFLP) analysis and quinone profiling Marine Ecology Progress Series. 220: 47-57. DOI: 10.3354/Meps220047  0.638
2001 Radjasa OK, Urakawa H, Kita-Tsukamoto K, Ohwada K. Characterization of Psychrotrophic Bacteria in the Surface and Deep-Sea Waters from the Northwestern Pacific Ocean Based on 16S Ribosomal DNA Analysis Marine Biotechnology. 3: 454-462. DOI: 10.1007/S10126-001-0050-1  0.645
1999 Urakawa H, Kita-Tsukamoto K, Ohwada K. Microbial diversity in marine sediments from Sagami Bay and Tokyo Bay, Japan, as determined by 16S rRNA gene analysis. Microbiology (Reading, England). 145: 3305-3315. PMID 10589740 DOI: 10.1099/00221287-145-11-3305  0.676
1999 Urakawa H, Kita-Tsukamoto K, Ohwada K. Reassessment of the taxonomic position of Vibrio iliopiscarius (Onarheim et al. 1994) and proposal for Photobacterium iliopiscarium comb. nov. International Journal of Systematic Bacteriology. 257-60. PMID 10028270 DOI: 10.1099/00207713-49-1-257  0.673
1999 Urakawa H, Kita-Tsukamoto K, Ohwada K. 16S rDNA restriction fragment length polymorphism analysis of psychrotrophic vibrios from Japanese coastal water Canadian Journal of Microbiology. 45: 1001-1007. DOI: 10.1139/W99-105  0.671
1999 Urakawa H, Kita-Tsukamoto K, Ohwada K. Restriction fragment length polymorphism analysis of psychrophilic and psychrotrophic Vibrio and Photobacterium from the north-western Pacific Ocean and Otsuchi Bay, Japan Canadian Journal of Microbiology. 45: 67-76. DOI: 10.1139/W98-128  0.666
1998 Urakawa H, Kita-Tsukamoto K, Steven SE, Ohwada K, Colwell RR. A proposal to transfer Vibrio marinus (Russell 1891) to a new genus Moritella gen. nov. as Moritella marina comb. nov. Fems Microbiology Letters. 165: 373-8. PMID 9742712 DOI: 10.1111/J.1574-6968.1998.Tb13173.X  0.663
1998 Urakawa H, Kita-Tsukamoto K, Ohwada K. A new approach to separate the genus Photobacterium from Vibrio with RFLP patterns by HhaI digestion of PCR-amplified 16S rDNA. Current Microbiology. 36: 171-4. PMID 9516546 DOI: 10.1007/Pl00006762  0.653
1998 Urakawa H, Kita-Tsukamoto K, Steven SE, Ohwada K, Colwell RR. Corrigendum to “A proposal to transferVibrio marinus(Russell 1891) to a new genusMoritellagen. nov. asMoritella marinacomb. nov.” Fems Microbiology Letters. 169: 207-207. DOI: 10.1111/J.1574-6968.1998.Tb13319.X  0.604
1997 Urakawa H, Kita-Tsukamoto K, Ohwada K. 16S rDNA genotyping using PCR/RFLP (restriction fragment length polymorphism) analysis among the family Vibrionaceae. Fems Microbiology Letters. 152: 125-32. PMID 9228779 DOI: 10.1111/J.1574-6968.1997.Tb10418.X  0.664
Show low-probability matches.