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Michael Baym, PhD - Publications

Affiliations: 
2003-2009 Mathematics Massachusetts Institute of Technology, Cambridge, MA, United States 
 2009-2017 Systems Biology Harvard Medical School, Boston, MA, United States 
 2017- Biomedical Informatics Harvard Medical School, Boston, MA, United States 
Area:
Antibiotic resistance, evolution, algorithms
Website:
baymlab.hms.harvard.edu
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16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Russ D, Glaser F, Shaer Tamar E, Yelin I, Baym M, Kelsic ED, Zampaloni C, Haldimann A, Kishony R. Escape mutations circumvent a tradeoff between resistance to a beta-lactam and resistance to a beta-lactamase inhibitor. Nature Communications. 11: 2029. PMID 32332717 DOI: 10.1038/S41467-020-15666-2  0.567
2020 Břinda K, Callendrello A, Ma KC, MacFadden DR, Charalampous T, Lee RS, Cowley L, Wadsworth CB, Grad YH, Kucherov G, O'Grady J, Baym M, Hanage WP. Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing. Nature Microbiology. PMID 32042129 DOI: 10.1038/S41564-019-0656-6  0.448
2019 Canals R, Chaudhuri RR, Steiner RE, Owen SV, Quinones-Olvera N, Gordon MA, Baym M, Ibba M, Hinton JCD. The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid. Plos Pathogens. 15: e1007948. PMID 31560731 DOI: 10.1371/Journal.Ppat.1007948  0.331
2017 Anzai IA, Shaket L, Adesina O, Baym M, Barstow B. Rapid curation of gene disruption collections using Knockout Sudoku. Nature Protocols. 12: 2110-2137. PMID 28906493 DOI: 10.1038/Nprot.2017.073  0.369
2016 Baym M, Shaket L, Anzai IA, Adesina O, Barstow B. Rapid construction of a whole-genome transposon insertion collection for Shewanella oneidensis by Knockout Sudoku. Nature Communications. 7: 13270. PMID 27830751 DOI: 10.1038/Ncomms13270  0.365
2016 Stone LK, Baym M, Lieberman TD, Chait R, Clardy J, Kishony R. Compounds that select against the tetracycline-resistance efflux pump. Nature Chemical Biology. PMID 27642863 DOI: 10.1038/Nchembio.2176  0.59
2016 Baym M, Lieberman TD, Kelsic ED, Chait R, Gross R, Yelin I, Kishony R. Spatiotemporal microbial evolution on antibiotic landscapes. Science (New York, N.Y.). 353: 1147-51. PMID 27609891 DOI: 10.1126/Science.Aag0822  0.609
2016 Baym M, Stone LK, Kishony R. Multidrug evolutionary strategies to reverse antibiotic resistance. Science (New York, N.Y.). 351: aad3292. PMID 26722002 DOI: 10.1126/Science.Aad3292  0.609
2015 Palmer AC, Toprak E, Baym M, Kim S, Veres A, Bershtein S, Kishony R. Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes. Nature Communications. 6: 7385. PMID 26060115 DOI: 10.1038/Ncomms8385  0.609
2015 Baym M, Kryazhimskiy S, Lieberman TD, Chung H, Desai MM, Kishony R. Inexpensive multiplexed library preparation for megabase-sized genomes. Plos One. 10: e0128036. PMID 26000737 DOI: 10.1371/Journal.Pone.0128036  0.585
2015 Baym M, Kryazhimskiy S, Lieberman TD, Chung H, Desai MM, Kishony R. Correction: Inexpensive multiplexed library preparation for megabase-sized genomes Plos One. 10. DOI: 10.1371/journal.pone.0131262  0.551
2013 Daniels NM, Gallant A, Peng J, Cowen LJ, Baym M, Berger B. Compressive genomics for protein databases. Bioinformatics (Oxford, England). 29: i283-90. PMID 23812995 DOI: 10.1093/Bioinformatics/Btt214  0.515
2012 Loh PR, Baym M, Berger B. Compressive genomics. Nature Biotechnology. 30: 627-30. PMID 22781691 DOI: 10.1038/nbt.2241  0.462
2011 Park D, Singh R, Baym M, Liao CS, Berger B. IsoBase: a database of functionally related proteins across PPI networks. Nucleic Acids Research. 39: D295-300. PMID 21177658 DOI: 10.1093/Nar/Gkq1234  0.447
2009 Lun DS, Rockwell G, Guido NJ, Baym M, Kelner JA, Berger B, Galagan JE, Church GM. Large-scale identification of genetic design strategies using local search. Molecular Systems Biology. 5: 296. PMID 19690565 DOI: 10.1038/Msb.2009.57  0.431
2009 Liao CS, Lu K, Baym M, Singh R, Berger B. IsoRankN: spectral methods for global alignment of multiple protein networks. Bioinformatics (Oxford, England). 25: i253-8. PMID 19477996 DOI: 10.1093/Bioinformatics/Btp203  0.463
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