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Year Citation  Score
2020 Sokolkova A, Bulyntsev SV, Chang PL, Carrasquilla-Garcia N, Igolkina AA, Noujdina NV, von Wettberg E, Vishnyakova MA, Cook DR, Nuzhdin SV, Samsonova MG. Genomic Analysis of Vavilov's Historic Chickpea Landraces Reveals Footprints of Environmental and Human Selection. International Journal of Molecular Sciences. 21. PMID 32486400 DOI: 10.3390/Ijms21113952  0.72
2019 Sivasakthi K, Marques E, Kalungwana N, Carrasquilla-Garcia N, Chang PL, Bergmann EM, Bueno E, Cordeiro M, Sani SGAS, Udupa SM, Rather IA, Rouf Mir R, Vadez V, Vandemark GJ, Gaur PM, ... Cook DR, et al. Functional Dissection of the Chickpea () Stay-Green Phenotype Associated with Molecular Variation at an Ortholog of Mendel's I Gene for Cotyledon Color: Implications for Crop Production and Carotenoid Biofortification. International Journal of Molecular Sciences. 20. PMID 31703441 DOI: 10.3390/Ijms20225562  0.72
2019 Greenlon A, Chang PL, Damtew ZM, Muleta A, Carrasquilla-Garcia N, Kim D, Nguyen HP, Suryawanshi V, Krieg CP, Yadav SK, Patel JS, Mukherjee A, Udupa S, Benjelloun I, Thami-Alami I, ... ... Cook DR, et al. Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria. Proceedings of the National Academy of Sciences of the United States of America. PMID 31285337 DOI: 10.1073/pnas.1900056116  0.72
2019 Shin MG, Bulyntsev SV, Chang PL, Korbu LB, Carrasquila-Garcia N, Vishnyakova MA, Samsonova MG, Cook DR, Nuzhdin SV. Multi-trait analysis of domestication genes in Cicer arietinum - Cicer reticulatum hybrids with a multidimensional approach: Modeling wide crosses for crop improvement. Plant Science : An International Journal of Experimental Plant Biology. 285: 122-131. PMID 31203876 DOI: 10.1016/J.Plantsci.2019.04.018  0.72
2018 Sani SGAS, Chang PL, Zubair A, Carrasquilla-Garcia N, Cordeiro M, Penmetsa RV, Munis MFH, Nuzhdin SV, Cook DR, von Wettberg EJ. Genetic Diversity, Population Structure, and Genetic Correlation with Climatic Variation in Chickpea () Landraces from Pakistan. The Plant Genome. 11. PMID 29505627 DOI: 10.3835/Plantgenome2017.08.0067  0.72
2018 von Wettberg EJB, Chang PL, Başdemir F, Carrasquila-Garcia N, Korbu LB, Moenga SM, Bedada G, Greenlon A, Moriuchi KS, Singh V, Cordeiro MA, Noujdina NV, Dinegde KN, Shah Sani SGA, Getahun T, ... ... Cook DR, et al. Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation. Nature Communications. 9: 649. PMID 29440741 DOI: 10.1038/S41467-018-02867-Z  0.72
2017 Plekhanova E, Vishnyakova MA, Bulyntsev S, Chang PL, Carrasquilla-Garcia N, Negash K, Wettberg EV, Noujdina N, Cook DR, Samsonova MG, Nuzhdin SV. Genomic and phenotypic analysis of Vavilov's historic landraces reveals the impact of environment and genomic islands of agronomic traits. Scientific Reports. 7: 4816. PMID 28684880 DOI: 10.1038/S41598-017-05087-5  0.72
2016 Epstein L, Kaur S, Chang PL, Carrasquilla-Garcia N, Lyu G, Cook DR, Subbarao KV, O'Donnell K. Races of the celery pathogen Fusarium oxysporum f. sp. apii are polyphyletic. Phytopathology. PMID 27938244 DOI: 10.1094/Phyto-04-16-0174-R  0.72
2016 Varma Penmetsa R, Carrasquilla-Garcia N, Bergmann EM, Vance L, Castro B, Kassa MT, Sarma BK, Datta S, Farmer AD, Baek JM, Coyne CJ, Varshney RK, von Wettberg EJ, Cook DR. Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor. The New Phytologist. PMID 27193699 DOI: 10.1111/nph.14010  1
2016 Kawashima CG, Guimarães GA, Nogueira SR, MacLean D, Cook DR, Steuernagel B, Baek J, Bouyioukos C, Melo BD, Tristão G, de Oliveira JC, Rauscher G, Mittal S, Panichelli L, Bacot K, et al. A pigeonpea gene confers resistance to Asian soybean rust in soybean. Nature Biotechnology. PMID 27111723 DOI: 10.1038/Nbt.3554  1
2015 Kim JH, Lee C, Hyung D, Jo YJ, Park JS, Cook DR, Choi HK. CSGM Designer: a platform for designing cross-species intron-spanning genic markers linked with genome information of legumes. Plant Methods. 11: 30. PMID 25908937 DOI: 10.1186/S13007-015-0074-6  1
2015 Leal-Bertioli SC, Santos SP, Dantas KM, Inglis PW, Nielen S, Araujo AC, Silva JP, Cavalcante U, Guimarães PM, Brasileiro AC, Carrasquilla-Garcia N, Penmetsa RV, Cook D, Moretzsohn MC, Bertioli DJ. Arachis batizocoi: a study of its relationship to cultivated peanut (A. hypogaea) and its potential for introgression of wild genes into the peanut crop using induced allotetraploids. Annals of Botany. 115: 237-49. PMID 25538110 DOI: 10.1093/aob/mcu237  1
2014 Gujaria-Verma N, Vail SL, Carrasquilla-Garcia N, Penmetsa RV, Cook DR, Farmer AD, Vandenberg A, Bett KE. Genetic mapping of legume orthologs reveals high conservation of synteny between lentil species and the sequenced genomes of Medicago and chickpea. Frontiers in Plant Science. 5: 676. PMID 25538716 DOI: 10.3389/fpls.2014.00676  1
2014 Friesen ML, von Wettberg EJ, Badri M, Moriuchi KS, Barhoumi F, Chang PL, Cuellar-Ortiz S, Cordeiro MA, Vu WT, Arraouadi S, Djébali N, Zribi K, Badri Y, Porter SS, Aouani ME, ... Cook DR, et al. The ecological genomic basis of salinity adaptation in Tunisian Medicago truncatula. Bmc Genomics. 15: 1160. PMID 25534372 DOI: 10.1186/1471-2164-15-1160  1
2014 Warschefsky E, Penmetsa RV, Cook DR, von Wettberg EJ. Back to the wilds: tapping evolutionary adaptations for resilient crops through systematic hybridization with crop wild relatives. American Journal of Botany. 101: 1791-800. PMID 25326621 DOI: 10.3732/Ajb.1400116  1
2014 Cordeiro MA, Moriuchi KS, Fotinos TD, Miller KE, Nuzhdin SV, von Wettberg EJ, Cook DR. Population differentiation for germination and early seedling root growth traits under saline conditions in the annual legume Medicago truncatula (Fabaceae). American Journal of Botany. 101: 488-98. PMID 24638163 DOI: 10.3732/Ajb.1300285  1
2014 Laporte P, Lepage A, Fournier J, Catrice O, Moreau S, Jardinaud MF, Mun JH, Larrainzar E, Cook DR, Gamas P, Niebel A. The CCAAT box-binding transcription factor NF-YA1 controls rhizobial infection. Journal of Experimental Botany. 65: 481-94. PMID 24319255 DOI: 10.1093/jxb/ert392  1
2013 Choi HK, Iandolino A, da Silva FG, Cook DR. Water deficit modulates the response of Vitis vinifera to the Pierce's disease pathogen Xylella fastidiosa. Molecular Plant-Microbe Interactions : Mpmi. 26: 643-57. PMID 23425100 DOI: 10.1094/Mpmi-09-12-0217-R  1
2013 Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, ... ... Cook DR, et al. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology. 31: 240-6. PMID 23354103 DOI: 10.1038/Nbt.2491  1
2013 Garzón LN, Oliveros OA, Rosen B, Ligarreto GA, Cook DR, Blair MW. Isolation and characterization of nucleotide-binding site resistance gene homologues in common bean (Phaseolus vulgaris). Phytopathology. 103: 156-68. PMID 23294404 DOI: 10.1094/PHYTO-07-12-0180-R  1
2013 Blair MW, Cortés AJ, Penmetsa RV, Farmer A, Carrasquilla-Garcia N, Cook DR. A high-throughput SNP marker system for parental polymorphism screening, and diversity analysis in common bean (Phaseolus vulgaris L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 126: 535-48. PMID 23124389 DOI: 10.1007/s00122-012-1999-z  1
2013 Riely BK, Larrainzar E, Haney CH, Mun JH, Gil-Quintana E, González EM, Yu HJ, Tricoli D, Ehrhardt DW, Long SR, Cook DR. Development of tools for the biochemical characterization of the symbiotic receptor-like kinase DMI2. Molecular Plant-Microbe Interactions : Mpmi. 26: 216-26. PMID 23013436 DOI: 10.1094/Mpmi-10-11-0276  1
2013 Castro BM, Moriuchi KS, Friesen ML, Badri M, Nuzhdin SV, Strauss SY, Cook DR, von Wettberg E. Parental environments and interactions with conspecifics alter salinity tolerance of offspring in the annual medicago truncatula Journal of Ecology. 101: 1281-1287. DOI: 10.1111/1365-2745.12125  1
2012 Saxena RK, Penmetsa RV, Upadhyaya HD, Kumar A, Carrasquilla-Garcia N, Schlueter JA, Farmer A, Whaley AM, Sarma BK, May GD, Cook DR, Varshney RK. Large-scale development of cost-effective single-nucleotide polymorphism marker assays for genetic mapping in pigeonpea and comparative mapping in legumes. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 19: 449-61. PMID 23103470 DOI: 10.1093/dnares/dss025  1
2012 Nagy ED, Guo Y, Tang S, Bowers JE, Okashah RA, Taylor CA, Zhang D, Khanal S, Heesacker AF, Khalilian N, Farmer AD, Carrasquilla-Garcia N, Penmetsa RV, Cook D, Stalker HT, et al. A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut. Bmc Genomics. 13: 469. PMID 22967170 DOI: 10.1186/1471-2164-13-469  1
2012 Bohra A, Saxena RK, Gnanesh BN, Saxena K, Byregowda M, Rathore A, Kavikishor PB, Cook DR, Varshney RK. An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 125: 1325-38. PMID 22772726 DOI: 10.1007/s00122-012-1916-5  1
2012 Kassa MT, Penmetsa RV, Carrasquilla-Garcia N, Sarma BK, Datta S, Upadhyaya HD, Varshney RK, von Wettberg EJ, Cook DR. Genetic patterns of domestication in pigeonpea (Cajanus cajan (L.) Millsp.) and wild Cajanus relatives. Plos One. 7: e39563. PMID 22745789 DOI: 10.1371/journal.pone.0039563  1
2012 Hiremath PJ, Kumar A, Penmetsa RV, Farmer A, Schlueter JA, Chamarthi SK, Whaley AM, Carrasquilla-Garcia N, Gaur PM, Upadhyaya HD, Kavi Kishor PB, Shah TM, Cook DR, Varshney RK. Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnology Journal. 10: 716-32. PMID 22703242 DOI: 10.1111/j.1467-7652.2012.00710.x  1
2012 Wang H, Penmetsa RV, Yuan M, Gong L, Zhao Y, Guo B, Farmer AD, Rosen BD, Gao J, Isobe S, Bertioli DJ, Varshney RK, Cook DR, He G. Development and characterization of BAC-end sequence derived SSRs, and their incorporation into a new higher density genetic map for cultivated peanut (Arachis hypogaea L.). Bmc Plant Biology. 12: 10. PMID 22260238 DOI: 10.1186/1471-2229-12-10  1
2012 Pandey MK, Monyo E, Ozias-Akins P, Liang X, Guimarães P, Nigam SN, Upadhyaya HD, Janila P, Zhang X, Guo B, Cook DR, Bertioli DJ, Michelmore R, Varshney RK. Advances in Arachis genomics for peanut improvement. Biotechnology Advances. 30: 639-51. PMID 22094114 DOI: 10.1016/J.Biotechadv.2011.11.001  1
2012 Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MT, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, ... ... Cook DR, et al. Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology. 30: 83-9. PMID 22057054 DOI: 10.1038/Nbt.2022  1
2011 Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, González AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, et al. MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes & Development. 25: 2540-53. PMID 22156213 DOI: 10.1101/Gad.177527.111  1
2011 Thudi M, Bohra A, Nayak SN, Varghese N, Shah TM, Penmetsa RV, Thirunavukkarasu N, Gudipati S, Gaur PM, Kulwal PL, Upadhyaya HD, Kavikishor PB, Winter P, Kahl G, Town CD, ... ... Cook DR, et al. Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.). Plos One. 6: e27275. PMID 22102885 DOI: 10.1371/Journal.Pone.0027275  1
2011 Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature. 480: 520-4. PMID 22089132 DOI: 10.1038/Nature10625  1
2011 Javot H, Penmetsa RV, Breuillin F, Bhattarai KK, Noar RD, Gomez SK, Zhang Q, Cook DR, Harrison MJ. Medicago truncatula mtpt4 mutants reveal a role for nitrogen in the regulation of arbuscule degeneration in arbuscular mycorrhizal symbiosis. The Plant Journal : For Cell and Molecular Biology. 68: 954-65. PMID 21848683 DOI: 10.1111/J.1365-313X.2011.04746.X  1
2011 Haney CH, Riely BK, Tricoli DM, Cook DR, Ehrhardt DW, Long SR. Symbiotic rhizobia bacteria trigger a change in localization and dynamics of the Medicago truncatula receptor kinase LYK3. The Plant Cell. 23: 2774-87. PMID 21742993 DOI: 10.1105/Tpc.111.086389  1
2011 Hiremath PJ, Farmer A, Cannon SB, Woodward J, Kudapa H, Tuteja R, Kumar A, Bhanuprakash A, Mulaosmanovic B, Gujaria N, Krishnamurthy L, Gaur PM, Kavikishor PB, Shah T, Srinivasan R, ... ... Cook DR, et al. Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnology Journal. 9: 922-31. PMID 21615673 DOI: 10.1111/J.1467-7652.2011.00625.X  1
2011 Bohra A, Dubey A, Saxena RK, Penmetsa RV, Poornima KN, Kumar N, Farmer AD, Srivani G, Upadhyaya HD, Gothalwal R, Ramesh S, Singh D, Saxena K, Kishor PB, Singh NK, ... ... Cook DR, et al. Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). Bmc Plant Biology. 11: 56. PMID 21447154 DOI: 10.1186/1471-2229-11-56  1
2011 Gujaria N, Kumar A, Dauthal P, Dubey A, Hiremath P, Bhanu Prakash A, Farmer A, Bhide M, Shah T, Gaur PM, Upadhyaya HD, Bhatia S, Cook DR, May GD, Varshney RK. Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 122: 1577-89. PMID 21384113 DOI: 10.1007/s00122-011-1556-1  1
2011 Dutta S, Kumawat G, Singh BP, Gupta DK, Singh S, Dogra V, Gaikwad K, Sharma TR, Raje RS, Bandhopadhya TK, Datta S, Singh MN, Bashasab F, Kulwal P, Wanjari KB, ... ... Cook DR, et al. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. Bmc Plant Biology. 11: 17. PMID 21251263 DOI: 10.1186/1471-2229-11-17  1
2011 Riely BK, He H, Venkateshwaran M, Sarma B, Schraiber J, Ané JM, Cook DR. Identification of legume RopGEF gene families and characterization of a Medicago truncatula RopGEF mediating polar growth of root hairs Plant Journal. 65: 230-243. PMID 21223388 DOI: 10.1111/J.1365-313X.2010.04414.X  1
2011 Stephens BW, Cook DR, Grusak MA. Characterization of zinc transport by divalent metal transporters of the ZIP family from the model legume Medicago truncatula. Biometals : An International Journal On the Role of Metal Ions in Biology, Biochemistry, and Medicine. 24: 51-8. PMID 20862522 DOI: 10.1007/s10534-010-9373-6  1
2010 Varshney RK, Penmetsa RV, Dutta S, Kulwal PL, Saxena RK, Datta S, Sharma TR, Rosen B, Carrasquilla-Garcia N, Farmer AD, Dubey A, Saxena KB, Gao J, Fakrudin B, Singh MN, ... ... Cook DR, et al. Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.). Molecular Breeding : New Strategies in Plant Improvement. 26: 393-408. PMID 20976284 DOI: 10.1007/s11032-009-9327-2  1
2010 Friesen ML, Cordeiro MA, Penmetsa RV, Badri M, Huguet T, Aouani ME, Cook DR, Nuzhdin SV. Population genomic analysis of Tunisian Medicago truncatula reveals candidates for local adaptation. The Plant Journal : For Cell and Molecular Biology. 63: 623-35. PMID 20545888 DOI: 10.1111/J.1365-313X.2010.04267.X  1
2010 Cook DR, Varshney RK. From genome studies to agricultural biotechnology: closing the gap between basic plant science and applied agriculture. Current Opinion in Plant Biology. 13: 115-8. PMID 20392663 DOI: 10.1016/j.pbi.2010.03.003  1
2010 Nayak SN, Zhu H, Varghese N, Datta S, Choi HK, Horres R, Jüngling R, Singh J, Kishor PB, Sivaramakrishnan S, Hoisington DA, Kahl G, Winter P, Cook DR, Varshney RK. Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 1415-41. PMID 20098978 DOI: 10.1007/S00122-010-1265-1  1
2009 Iandolino AB, Cook DR. Phenylpropanoid Metabolism in Plants: Biochemistry, Functional Biology, and Metabolic Engineering Plant Phenolics and Human Health: Biochemistry, Nutrition, and Pharmacology. 489-563. DOI: 10.1002/9780470531792.ch21  1
2008 Iandolino A, Nobuta K, da Silva FG, Cook DR, Meyers BC. Comparative expression profiling in grape (Vitis vinifera) berries derived from frequency analysis of ESTs and MPSS signatures. Bmc Plant Biology. 8: 53. PMID 18474095 DOI: 10.1186/1471-2229-8-53  1
2008 Baek JM, Han P, Iandolino A, Cook DR. Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice. Plant Molecular Biology. 67: 499-510. PMID 18438730 DOI: 10.1007/s11103-008-9334-4  1
2008 Penmetsa RV, Uribe P, Anderson J, Lichtenzveig J, Gish JC, Nam YW, Engstrom E, Xu K, Sckisel G, Pereira M, Baek JM, Lopez-Meyer M, Long SR, Harrison MJ, Singh KB, ... ... Cook DR, et al. The Medicago truncatula ortholog of Arabidopsis EIN2, sickle, is a negative regulator of symbiotic and pathogenic microbial associations. The Plant Journal : For Cell and Molecular Biology. 55: 580-95. PMID 18435823 DOI: 10.1111/J.1365-313X.2008.03531.X  1
2008 Goudeau D, Uratsu SL, Inoue K, daSilva FG, Leslie A, Cook D, Reagan RL, Dandekar AM. Tuning the orchestra: Selective gene regulation and orange fruit quality Plant Science. 174: 310-320. DOI: 10.1016/J.Plantsci.2007.11.017  1
2007 Messinese E, Mun JH, Yeun LH, Jayaraman D, Rougé P, Barre A, Lougnon G, Schornack S, Bono JJ, Cook DR, Ané JM. A novel nuclear protein interacts with the symbiotic DMI3 calcium- and calmodulin-dependent protein kinase of Medicago truncatula. Molecular Plant-Microbe Interactions : Mpmi. 20: 912-21. PMID 17722695 DOI: 10.1094/Mpmi-20-8-0912  1
2007 Peiter E, Sun J, Heckmann AB, Venkateshwaran M, Riely BK, Otegui MS, Edwards A, Freshour G, Hahn MG, Cook DR, Sanders D, Oldroyd GE, Downie JA, Ané JM. The Medicago truncatula DMI1 protein modulates cytosolic calcium signaling. Plant Physiology. 145: 192-203. PMID 17631529 DOI: 10.1104/Pp.107.097261  1
2007 Middleton PH, Jakab J, Penmetsa RV, Starker CG, Doll J, Kaló P, Prabhu R, Marsh JF, Mitra RM, Kereszt A, Dudas B, VandenBosch K, Long SR, Cook DR, Kiss GB, et al. An ERF transcription factor in Medicago truncatula that is essential for Nod factor signal transduction. The Plant Cell. 19: 1221-34. PMID 17449807 DOI: 10.1105/Tpc.106.048264  1
2007 Javot H, Penmetsa RV, Terzaghi N, Cook DR, Harrison MJ. A Medicago truncatula phosphate transporter indispensable for the arbuscular mycorrhizal symbiosis. Proceedings of the National Academy of Sciences of the United States of America. 104: 1720-5. PMID 17242358 DOI: 10.1073/Pnas.0608136104  1
2007 Riely BK, Lougnon G, Ané JM, Cook DR. The symbiotic ion channel homolog DMI1 is localized in the nuclear membrane of Medicago truncatula roots. The Plant Journal : For Cell and Molecular Biology. 49: 208-16. PMID 17173544 DOI: 10.1111/J.1365-313X.2006.02957.X  1
2006 Cannon SB, Sterck L, Rombauts S, Sato S, Cheung F, Gouzy J, Wang X, Mudge J, Vasdewani J, Schiex T, Scheix T, Spannagl M, Monaghan E, Nicholson C, Humphray SJ, ... ... Cook DR, et al. Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proceedings of the National Academy of Sciences of the United States of America. 103: 14959-64. PMID 17003129 DOI: 10.1073/Pnas.0603228103  1
2006 Choi HK, Luckow MA, Doyle J, Cook DR. Development of nuclear gene-derived molecular markers linked to legume genetic maps. Molecular Genetics and Genomics : Mgg. 276: 56-70. PMID 16642337 DOI: 10.1007/S00438-006-0118-8  1
2006 DeBolt S, Cook DR, Ford CM. L-tartaric acid synthesis from vitamin C in higher plants. Proceedings of the National Academy of Sciences of the United States of America. 103: 5608-13. PMID 16567629 DOI: 10.1073/Pnas.0510864103  1
2005 Cannon SB, Crow JA, Heuer ML, Wang X, Cannon EK, Dwan C, Lamblin AF, Vasdewani J, Mudge J, Cook A, Gish J, Cheung F, Kenton S, Kunau TM, Brown D, ... ... Cook DR, et al. Databases and information integration for the Medicago truncatula genome and transcriptome. Plant Physiology. 138: 38-46. PMID 15888676 DOI: 10.1104/Pp.104.059204  1
2005 Zhu H, Choi HK, Cook DR, Shoemaker RC. Bridging model and crop legumes through comparative genomics. Plant Physiology. 137: 1189-96. PMID 15824281 DOI: 10.1104/Pp.104.058891  1
2005 Young ND, Cannon SB, Sato S, Kim D, Cook DR, Town CD, Roe BA, Tabata S. Sequencing the genespaces of Medicago truncatula and Lotus japonicus. Plant Physiology. 137: 1174-81. PMID 15824279 DOI: 10.1104/Pp.104.057034  1
2005 Scherson RA, Choi HK, Cook DR, Sanderson MJ. Phylogenetics of New World Astragalus: Screening of novel nuclear loci for the reconstruction of phylogenies at low taxonomic levels Brittonia. 57: 354-366. DOI: 10.1663/0007-196X(2005)057[0354:Ponwas]2.0.Co;2  1
2004 Kuppusamy KT, Endre G, Prabhu R, Penmetsa RV, Veereshlingam H, Cook DR, Dickstein R, Vandenbosch KA. LIN, a Medicago truncatula gene required for nodule differentiation and persistence of rhizobial infections. Plant Physiology. 136: 3682-91. PMID 15516512 DOI: 10.1104/Pp.104.045575  1
2004 Veereshlingam H, Haynes JG, Penmetsa RV, Cook DR, Sherrier DJ, Dickstein R. nip, a symbiotic Medicago truncatula mutant that forms root nodules with aberrant infection threads and plant defense-like response. Plant Physiology. 136: 3692-702. PMID 15516506 DOI: 10.1104/Pp.104.049064  1
2004 Choi HK, Mun JH, Kim DJ, Zhu H, Baek JM, Mudge J, Roe B, Ellis N, Doyle J, Kiss GB, Young ND, Cook DR. Estimating genome conservation between crop and model legume species. Proceedings of the National Academy of Sciences of the United States of America. 101: 15289-94. PMID 15489274 DOI: 10.1073/Pnas.0402251101  1
2004 Riely BK, Ané JM, Penmetsa RV, Cook DR. Genetic and genomic analysis in model legumes bring Nod-factor signaling to center stage. Current Opinion in Plant Biology. 7: 408-13. PMID 15231263 DOI: 10.1016/J.Pbi.2004.04.005  1
2004 Cook DR. Unraveling the mystery of Nod factor signaling by a genomic approach in Medicago trunactula. Proceedings of the National Academy of Sciences of the United States of America. 101: 4339-40. PMID 15070718 DOI: 10.1073/pnas.0400961101  1
2004 Yan HH, Mudge J, Kim DJ, Shoemaker RC, Cook DR, Young ND. Comparative physical mapping reveals features of microsynteny between Glycine max, Medicago truncatula, and Arabidopsis thaliana. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 47: 141-55. PMID 15060611 DOI: 10.1139/g03-106  1
2004 Ané JM, Kiss GB, Riely BK, Penmetsa RV, Oldroyd GE, Ayax C, Lévy J, Debellé F, Baek JM, Kalo P, Rosenberg C, Roe BA, Long SR, Dénarié J, Cook DR. Medicago truncatula DMI1 required for bacterial and fungal symbioses in legumes. Science (New York, N.Y.). 303: 1364-7. PMID 14963334 DOI: 10.1126/Science.1092986  1
2003 Amor BB, Shaw SL, Oldroyd GE, Maillet F, Penmetsa RV, Cook D, Long SR, Dénarié J, Gough C. The NFP locus of Medicago truncatula controls an early step of Nod factor signal transduction upstream of a rapid calcium flux and root hair deformation. The Plant Journal : For Cell and Molecular Biology. 34: 495-506. PMID 12753588 DOI: 10.1046/J.1365-313X.2003.01743.X  1
2003 Yan HH, Mudge J, Kim DJ, Larsen D, Shoemaker RC, Cook DR, Young ND. Estimates of conserved microsynteny among the genomes of Glycine max, Medicago truncatula and Arabidopsis thaliana. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 106: 1256-65. PMID 12748777 DOI: 10.1007/s00122-002-1183-y  1
2003 Zhu H, Kim DJ, Baek JM, Choi HK, Ellis LC, Küester H, McCombie WR, Peng HM, Cook DR. Syntenic relationships between Medicago truncatula and Arabidopsis reveal extensive divergence of genome organization. Plant Physiology. 131: 1018-26. PMID 12644654 DOI: 10.1104/Pp.102.016436  1
2003 Penmetsa RV, Frugoli JA, Smith LS, Long SR, Cook DR. Dual genetic pathways controlling nodule number in Medicago truncatula. Plant Physiology. 131: 998-1008. PMID 12644652 DOI: 10.1104/Pp.015677  1
2003 Lamblin AF, Crow JA, Johnson JE, Silverstein KA, Kunau TM, Kilian A, Benz D, Stromvik M, Endré G, VandenBosch KA, Cook DR, Young ND, Retzel EF. MtDB: a database for personalized data mining of the model legume Medicago truncatula transcriptome. Nucleic Acids Research. 31: 196-201. PMID 12519981 DOI: 10.1093/Nar/Gkg119  1
2003 Phillips DA, Ferris H, Cook DR, Strong DR. Molecular control points in rhizosphere food webs Ecology. 84: 816-826. DOI: 10.1890/0012-9658(2003)084[0816:Mcpirf]2.0.Co;2  1
2002 Zhu H, Cannon SB, Young ND, Cook DR. Phylogeny and genomic organization of the TIR and non-tIR NBS-LRR resistance gene family in Medicago truncatula. Molecular Plant-Microbe Interactions : Mpmi. 15: 529-39. PMID 12059101 DOI: 10.1094/Mpmi.2002.15.6.529  1
2002 Ramu SK, Peng HM, Cook DR. Nod factor induction of reactive oxygen species production is correlated with expression of the early nodulin gene rip1 in Medicago truncatula Molecular Plant-Microbe Interactions. 15: 522-528. PMID 12059100  1
2002 Cannon SB, Zhu H, Baumgarten AM, Spangler R, May G, Cook DR, Young ND. Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies. Journal of Molecular Evolution. 54: 548-62. PMID 11956693 DOI: 10.1007/S0023901-0057-2  1
2002 Kim DJ, Baek JM, Uribe P, Kenerley CM, Cook DR. Cloning and characterization of multiple glycosyl hydrolase genes from Trichoderma virens. Current Genetics. 40: 374-84. PMID 11919676 DOI: 10.1007/S00294-001-0267-6  1
2002 Dickstein R, Hu X, Yang J, Ba L, Coque L, Kim DJ, Cook DR, Yeung AT. Differential expression of tandemly duplicated Enod8 genes in Medicago Plant Science. 163: 333-343. DOI: 10.1016/S0168-9452(02)00132-2  1
2001 Cohn JR, Uhm T, Ramu S, Nam YW, Kim DJ, Penmetsa RV, Wood TC, Denny RL, Young ND, Cook DR, Stacey G. Differential regulation of a family of apyrase genes from Medicago truncatula. Plant Physiology. 125: 2104-19. PMID 11299390 DOI: 10.1104/Pp.125.4.2104  1
2000 Wais RJ, Galera C, Oldroyd G, Catoira R, Penmetsa RV, Cook D, Gough C, Denarié J, Long SR. Genetic analysis of calcium spiking responses in nodulation mutants of Medicago truncatula. Proceedings of the National Academy of Sciences of the United States of America. 97: 13407-12. PMID 11078514 DOI: 10.1073/Pnas.230439797  1
2000 Penmetsa RV, Cook DR. Production and characterization of diverse developmental mutants of Medicago truncatula Plant Physiology. 123: 1387-1397. PMID 10938356  1
1999 Cook DR. Medicago truncatula - A model in the making! Current Opinion in Plant Biology. 2: 301-304. PMID 10459004 DOI: 10.1016/S1369-5266(99)80053-3  1
1997 Penmetsa RV, Cook DR. A legume ethylene-insensitive mutant hyperinfected by its rhizobial symbiont Science. 275: 527-530. DOI: 10.1126/science.275.5299.527  1
1996 Peng HM, Dreyer DA, VandenBosch KA, Cook D. Gene structure and differential regulation of the Rhizobium-induced peroxidase gene rip1. Plant Physiology. 112: 1437-46. PMID 8972593 DOI: 10.1104/Pp.112.4.1437  1
1995 Cook D, Dreyer D, Bonnet D, Howell M, Nony E, VandenBosch K. Transient induction of a peroxidase gene in Medicago truncatula precedes infection by Rhizobium meliloti. The Plant Cell. 7: 43-55. PMID 7696879 DOI: 10.1105/Tpc.7.1.43  1
1991 Cook D, Sequeira L. Genetic and biochemical characterization of a Pseudomonas solanacearum gene cluster required for extracellular polysaccharide production and for virulence. Journal of Bacteriology. 173: 1654-62. PMID 1999385 DOI: 10.1128/jb.173.5.1654-1662.1991  1
1991 Cook D, Sequeira L. The use of subtractive hybridization to obtain a DNA probe specific for Pseudomonas solanacearum race 3. Molecular & General Genetics : Mgg. 227: 401-10. PMID 1865877 DOI: 10.1007/Bf00273930  1
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