Stefan Uphoff - Publications

Oxford University UK 

20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Stracy M, Schweizer J, Sherratt DJ, Kapanidis AN, Uphoff S, Lesterlin C. Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins. Molecular Cell. PMID 33621478 DOI: 10.1016/j.molcel.2021.01.039  0.49
2020 Lawarée E, Jankevicius G, Cooper C, Ahel I, Uphoff S, Tang CM. DNA ADP-Ribosylation Stalls Replication and Is Reversed by RecF-Mediated Homologous Recombination and Nucleotide Excision Repair. Cell Reports. 30: 1373-1384.e4. PMID 32023456 DOI: 10.1016/J.Celrep.2020.01.014  0.592
2019 Uphoff S. A Quantitative Model Explains Single-Cell Dynamics of the Adaptive Response in Escherichia coli. Biophysical Journal. 117: 1156-1165. PMID 31466698 DOI: 10.1016/j.bpj.2019.08.009  0.435
2018 Uphoff S. Real-time dynamics of mutagenesis reveal the chronology of DNA repair and damage tolerance responses in single cells. Proceedings of the National Academy of Sciences of the United States of America. 115: E6516-E6525. PMID 29941584 DOI: 10.1073/pnas.1801101115  0.65
2017 Rhodes JD, Mazza D, Nasmyth KA, Uphoff S. Scc2/Nipbl hops between chromosomal cohesin rings after loading. Elife. 6. PMID 28914604 DOI: 10.7554/eLife.30000  0.31
2017 Uphoff S, Sherratt DJ. Single-Molecule Analysis of Bacterial DNA Repair and Mutagenesis. Annual Review of Biophysics. PMID 28375733 DOI: 10.1146/annurev-biophys-070816-034106  0.651
2017 Beattie TR, Kapadia N, Nicolas E, Uphoff S, Wollman AJ, Leake MC, Reyes-Lamothe R. Frequent exchange of the DNA polymerase during bacterial chromosome replication. Elife. 6. PMID 28362256 DOI: 10.7554/eLife.21763  0.42
2016 Stracy M, Jaciuk M, Uphoff S, Kapanidis AN, Nowotny M, Sherratt DJ, Zawadzki P. Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli. Nature Communications. 7: 12568. PMID 27562541 DOI: 10.1038/ncomms12568  0.406
2016 Uphoff S. Super-Resolution Microscopy and Tracking of DNA-Binding Proteins in Bacterial Cells. Methods in Molecular Biology (Clifton, N.J.). 1431: 221-34. PMID 27283312 DOI: 10.1007/978-1-4939-3631-1_16  0.519
2016 Uphoff S, Lord ND, Okumus B, Potvin-Trottier L, Sherratt DJ, Paulsson J. Stochastic activation of a DNA damage response causes cell-to-cell mutation rate variation. Science (New York, N.Y.). 351: 1094-7. PMID 26941321 DOI: 10.1126/Science.Aac9786  0.619
2015 Stracy M, Uphoff S, Garza de Leon F, Kapanidis AN. Corrigendum to "In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair" [FEBS Lett. 588 (19) (2014) 3585-3594]. Febs Letters. 589: 787. PMID 26864684 DOI: 10.1016/j.febslet.2015.01.021  0.478
2015 Stracy M, Lesterlin C, Garza de Leon F, Uphoff S, Zawadzki P, Kapanidis AN. Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid. Proceedings of the National Academy of Sciences of the United States of America. 112: E4390-9. PMID 26224838 DOI: 10.1073/pnas.1507592112  0.326
2014 Stracy M, Uphoff S, Garza de Leon F, Kapanidis AN. In vivo single-molecule imaging of bacterial DNA replication, transcription, and repair. Febs Letters. 588: 3585-94. PMID 24859634 DOI: 10.1016/j.febslet.2014.05.026  0.503
2014 Uphoff S, Sherratt DJ, Kapanidis AN. Visualizing protein-DNA interactions in live bacterial cells using photoactivated single-molecule tracking. Journal of Visualized Experiments : Jove. PMID 24638084 DOI: 10.3791/51177  0.549
2014 Uphoff S, Kapanidis AN. Studying the organization of DNA repair by single-cell and single-molecule imaging. Dna Repair. 20: 32-40. PMID 24629485 DOI: 10.1016/j.dnarep.2014.02.015  0.63
2014 Nicolas E, Upton AL, Uphoff S, Henry O, Badrinarayanan A, Sherratt D. The SMC complex MukBEF recruits topoisomerase IV to the origin of replication region in live Escherichia coli. Mbio. 5: e01001-13. PMID 24520061 DOI: 10.1128/mBio.01001-13  0.369
2013 Crawford R, Torella JP, Aigrain L, Plochowietz A, Gryte K, Uphoff S, Kapanidis AN. Long-lived intracellular single-molecule fluorescence using electroporated molecules. Biophysical Journal. 105: 2439-50. PMID 24314075 DOI: 10.1016/j.bpj.2013.09.057  0.356
2013 Uphoff S, Reyes-Lamothe R, Garza de Leon F, Sherratt DJ, Kapanidis AN. Single-molecule DNA repair in live bacteria. Proceedings of the National Academy of Sciences of the United States of America. 110: 8063-8. PMID 23630273 DOI: 10.1073/pnas.1301804110  0.566
2010 Holden SJ, Uphoff S, Hohlbein J, Yadin D, Le Reste L, Britton OJ, Kapanidis AN. Defining the limits of single-molecule FRET resolution in TIRF microscopy Biophysical Journal. 99: 3102-3111. PMID 21044609 DOI: 10.1016/j.bpj.2010.09.005  0.396
2010 Uphoff S, Holden SJ, Le Reste L, Periz J, Van De Linde S, Heilemann M, Kapanidis AN. Monitoring multiple distances within a single molecule using switchable FRET Nature Methods. 7: 831-836. PMID 20818380 DOI: 10.1038/nmeth.1502  0.358
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