Patricia Holden, Ph.D, M.S., M.Eng - Publications

Affiliations: 
1997- Bren School of Environmental Management University of California, Santa Barbara, Santa Barbara, CA, United States 
Area:
environmental microbiology, microbial ecology
Website:
https://holdenlab.eri.ucsb.edu/

38/178 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Li D, Van De Werfhorst LC, Rugh MB, Feraud M, Hung WC, Jay J, Cao Y, Parker EA, Grant SB, Holden PA. Limited Bacterial Removal in Full-Scale Stormwater Biofilters as Evidenced by Community Sequencing Analysis. Environmental Science & Technology. PMID 34106689 DOI: 10.1021/acs.est.1c00510  0.382
2021 Feraud M, Holden PA. Evaluating the relationships between specific drainage area characteristics and soil metal concentrations in long-established bioswales receiving suburban stormwater runoff. The Science of the Total Environment. 757: 143778. PMID 33267993 DOI: 10.1016/j.scitotenv.2020.143778  0.351
2019 Wang Y, Schimel JP, Nisbet RM, Gardea-Torresdey JL, Holden PA. Soybeans Grown with Carbonaceous Nanomaterials Maintain Nitrogen Stoichiometry by Assimilating Soil Nitrogen to Offset Impaired Dinitrogen Fixation. Acs Nano. PMID 31825596 DOI: 10.1021/Acsnano.9B06970  0.59
2019 Wang Y, Welch ZS, Ramirez AR, Bouchard DC, Schimel JP, Gardea-Torresdey JL, Holden PA. Effects of carbonaceous nanomaterials on soil-grown soybeans under combined heat and insect stresses Environmental Chemistry. 16: 482. DOI: 10.1071/En19047  0.561
2019 Cai P, Sun X, Wu Y, Gao C, Mortimer M, Holden PA, Redmile-Gordon M, Huang Q. Soil biofilms: microbial interactions, challenges, and advanced techniques for ex-situ characterization Soil Ecology Letters. 1: 85-93. DOI: 10.1007/s42832-019-0017-7  0.363
2018 Ge Y, Shen C, Wang Y, Sun YQ, Schimel JP, Gardea-Torresdey JL, Holden PA. Carbonaceous Nanomaterials Have Higher Effects on Soybean Rhizosphere Prokaryotic Communities During the Reproductive Growth Phase than During Vegetative Growth. Environmental Science & Technology. PMID 29719150 DOI: 10.1021/Acs.Est.8B00937  0.603
2017 Wang Y, Chang CH, Ji Z, Bouchard DC, Nisbet RM, Schimel JP, Gardea-Torresdey JL, Holden PA. Agglomeration Determines Effects of Carbonaceous Nanomaterials on Soybean Nodulation, Dinitrogen Fixation Potential, and Growth in Soil. Acs Nano. PMID 28549216 DOI: 10.1021/Acsnano.7B01337  0.363
2016 Priester JH, Moritz SC, Espinosa K, Ge Y, Wang Y, Nisbet RM, Schimel JP, Susana Goggi A, Gardea-Torresdey JL, Holden PA. Damage assessment for soybean cultivated in soil with either CeO2 or ZnO manufactured nanomaterials. The Science of the Total Environment. PMID 27939199 DOI: 10.1016/J.Scitotenv.2016.11.149  0.603
2016 Ge Y, Priester JH, Mortimer M, Chang CH, Ji Z, Schimel JP, Holden PA. Long-term effects of multi-walled carbon nanotubes and graphene on microbial communities in dry soil. Environmental Science & Technology. PMID 26962674 DOI: 10.1021/Acs.Est.5B05620  0.634
2015 Liu R, Ge Y, Holden PA, Cohen Y. Analysis of soil bacteria susceptibility to manufactured nanoparticles via data visualization. Beilstein Journal of Nanotechnology. 6: 1635-51. PMID 26425414 DOI: 10.3762/bjnano.6.166  0.41
2014 Ge Y, Priester JH, Van De Werfhorst LC, Walker SL, Nisbet RM, An YJ, Schimel JP, Gardea-Torresdey JL, Holden PA. Soybean plants modify metal oxide nanoparticle effects on soil bacterial communities. Environmental Science & Technology. 48: 13489-96. PMID 25354168 DOI: 10.1021/Es5031646  0.648
2014 Ge Y, Schimel JP, Holden PA. Analysis of run-to-run variation of bar-coded pyrosequencing for evaluating bacterial community shifts and individual taxa dynamics. Plos One. 9: e99414. PMID 24911191 DOI: 10.1371/Journal.Pone.0099414  0.49
2014 Holden PA, Schimel JP, Godwin HA. Five reasons to use bacteria when assessing manufactured nanomaterial environmental hazards and fates. Current Opinion in Biotechnology. 27: 73-8. PMID 24863899 DOI: 10.1016/J.Copbio.2013.11.008  0.537
2014 Yoon SJ, Kwak JI, Lee WM, Holden PA, An YJ. Zinc oxide nanoparticles delay soybean development: a standard soil microcosm study. Ecotoxicology and Environmental Safety. 100: 131-7. PMID 24296285 DOI: 10.1016/j.ecoenv.2013.10.014  0.304
2013 Ge Y, Priester JH, Van De Werfhorst LC, Schimel JP, Holden PA. Potential mechanisms and environmental controls of TiO2 nanoparticle effects on soil bacterial communities. Environmental Science & Technology. 47: 14411-7. PMID 24256577 DOI: 10.1021/Es403385C  0.479
2013 Cao Y, Van De Werfhorst LC, Dubinsky EA, Badgley BD, Sadowsky MJ, Andersen GL, Griffith JF, Holden PA. Evaluation of molecular community analysis methods for discerning fecal sources and human waste. Water Research. 47: 6862-72. PMID 23880215 DOI: 10.1016/J.Watres.2013.02.061  0.658
2013 Holden PA, Nisbet RM, Lenihan HS, Miller RJ, Cherr GN, Schimel JP, Gardea-Torresdey JL. Ecological nanotoxicology: integrating nanomaterial hazard considerations across the subcellular, population, community, and ecosystems levels. Accounts of Chemical Research. 46: 813-22. PMID 23039211 DOI: 10.1021/Ar300069T  0.526
2013 Priester JH, Ge Y, Chang V, Stoimenov PK, Schimel JP, Stucky GD, Holden PA. Assessing interactions of hydrophilic nanoscale TiO2 with soil water Journal of Nanoparticle Research. 15. DOI: 10.1007/S11051-013-1899-4  0.637
2012 Priester JH, Ge Y, Mielke RE, Horst AM, Moritz SC, Espinosa K, Gelb J, Walker SL, Nisbet RM, An YJ, Schimel JP, Palmer RG, Hernandez-Viezcas JA, Zhao L, Gardea-Torresdey JL, ... Holden PA, et al. Soybean susceptibility to manufactured nanomaterials with evidence for food quality and soil fertility interruption. Proceedings of the National Academy of Sciences of the United States of America. 109: E2451-6. PMID 22908279 DOI: 10.1073/Pnas.1205431109  0.628
2012 Ge Y, Schimel JP, Holden PA. Identification of soil bacteria susceptible to TiO2 and ZnO nanoparticles. Applied and Environmental Microbiology. 78: 6749-58. PMID 22798374 DOI: 10.1128/Aem.00941-12  0.649
2012 Priester JH, Ge Y, Mielke RE, Horst AM, Moritz SC, Espinosa K, Gelb J, Walker SL, Nisbet RM, An YJ, Schimel JP, Palmer RG, Hernandez-Viezcas JA, Zhao L, Gardea-Torresdey JL, ... Holden PA, et al. Reply to Lombi et al.: Clear effects of manufactured nanomaterials to soybean Proceedings of the National Academy of Sciences of the United States of America. 109: E3337. DOI: 10.1073/Pnas.1215763109  0.546
2011 Ge Y, Schimel JP, Holden PA. Evidence for negative effects of TiO2 and ZnO nanoparticles on soil bacterial communities. Environmental Science & Technology. 45: 1659-64. PMID 21207975 DOI: 10.1021/Es103040T  0.656
2011 Murray J, Reynolds S, Holden P, Werfhorst LVD. Canine Scent and Microbial Source Tracking in Santa Barbara, California Water Intelligence Online. 10: 9781843395485. DOI: 10.2166/9781843395485  0.325
2011 Schimel JP, Wetterstedt JAM, Holden PA, Trumbore SE. Drying/rewetting cycles mobilize old C from deep soils from a California annual grassland Soil Biology and Biochemistry. 43: 1101-1103. DOI: 10.1016/J.Soilbio.2011.01.008  0.609
2010 Roux-Michollet DD, Schimel JP, Holden PA. Pushing the limits for amplifying BrdU-labeled DNA encoding 16S rRNA: DNA polymerase as the determining factor. Journal of Microbiological Methods. 83: 312-6. PMID 20883730 DOI: 10.1016/J.Mimet.2010.09.016  0.517
2008 Xiang SR, Doyle A, Holden PA, Schimel JP. Drying and rewetting effects on C and N mineralization and microbial activity in surface and subsurface California grassland soils Soil Biology and Biochemistry. 40: 2281-2289. DOI: 10.1016/j.soilbio.2008.05.004  0.608
2005 Holden PA, Fierer N. Microbial Processes in the Vadose Zone Vadose Zone Journal. 4: 1-21. DOI: 10.2113/4.1.1  0.43
2003 LaMontagne MG, Schimel JP, Holden PA. Comparison of subsurface and surface soil bacterial communities in California grassland as assessed by terminal restriction fragment length polymorphisms of PCR-amplified 16S rRNA genes. Microbial Ecology. 46: 216-27. PMID 14708746 DOI: 10.1007/s00248-003-1006-y  0.439
2003 Fierer N, Schimel JP, Holden PA. Influence of drying-rewetting frequency on soil bacterial community structure. Microbial Ecology. 45: 63-71. PMID 12469245 DOI: 10.1007/S00248-002-1007-2  0.476
2003 Fierer N, Allen AS, Schimel JP, Holden PA. Controls on microbial CO2 production: A comparison of surface and subsurface soil horizons Global Change Biology. 9: 1322-1332. DOI: 10.1046/J.1365-2486.2003.00663.X  0.636
2003 Fierer N, Schimel JP, Holden PA. Variations in microbial community composition through two soil depth profiles Soil Biology and Biochemistry. 35: 167-176. DOI: 10.1016/S0038-0717(02)00251-1  0.654
2002 Saleta JL, Holden P. Imaging Soil Bacteria in an Environmental Scanning Electron Microscope Microscopy and Microanalysis. 8: 990-991. DOI: 10.1017/S1431927602107148  0.429
2001 Holden PA, Hersman LE, Firestone MK. Water Content Mediated Microaerophilic Toluene Biodegradation in Arid Vadose Zone Materials. Microbial Ecology. 42: 256-266. PMID 12024251 DOI: 10.1007/s00248-001-0010-3  0.575
2001 Holden P, Pierce D. New Environmental Scanning Electron Microscopic (ESEM) Observations of Bacteria on Simulated Soil Substrates Microscopy and Microanalysis. 7: 736-737. DOI: 10.1017/S1431927600029755  0.435
1997 Holden PA, Hunt JR, Firestone MK. Toluene diffusion and reaction in unsaturated Pseudomonas putida biofilms. Biotechnology and Bioengineering. 56: 656-70. PMID 18642338 DOI: 10.1002/(Sici)1097-0290(19971220)56:6<656::Aid-Bit9>3.0.Co;2-M  0.473
1997 Holden PA, Halverson LJ, Firestone MK. Water stress effects on toluene biodegradation by Pseudomonas putida. Biodegradation. 8: 143-51. PMID 9396169 DOI: 10.1023/A:1008237819089  0.49
1997 Holden PA, Firestone MK. Soil microorganisms in soil cleanup: How can we improve our understanding? Journal of Environmental Quality. 26: 32-40.  0.611
1995 Hunt JR, Holden PA, Firestone MK. Coupling transport and biodegradation of VOCs in surface and subsurface soils. Environmental Health Perspectives. 103: 75-8. PMID 8565916 DOI: 10.1289/Ehp.95103S475  0.538
Low-probability matches (unlikely to be authored by this person)
2019 Wang Y, Welch ZS, Ramirez A, Bouchard DC, Schimel JP, Gardea-Torresdey JL, Holden PA. Effects of carbonaceous nanomaterials on soil-grown soybeans under combined heat and insect stresses. Environmental Chemistry (Collingwood, Vic.). 16: 482-493. PMID 34316290 DOI: 10.1071/EN19047  0.296
2019 Petersen EJ, Mortimer M, Burgess RM, Handy R, Hanna S, Ho KT, Johnson M, Loureiro S, Selck H, Scott-Fordsmand JJ, Spurgeon D, Unrine J, van den Brink N, Wang Y, White J, ... Holden P, et al. Strategies for robust and accurate experimental approaches to quantify nanomaterial bioaccumulation across a broad range of organisms. Environmental Science. Nano. 6. PMID 31579514 DOI: 10.1039/C8En01378K  0.294
2022 Feraud M, Ahearn SP, Parker EA, Avasarala S, Rugh MB, Hung WC, Li D, Werfhorst LCV, Kefela T, Hemati A, Mehring AS, Cao Y, Jay JA, Liu H, Grant SB, ... Holden PA, et al. Stormwater biofilter response to high nitrogen loading under transient flow conditions: Ammonium and nitrate fates, and nitrous oxide emissions. Water Research. 230: 119501. PMID 36587519 DOI: 10.1016/j.watres.2022.119501  0.292
2021 Hung WC, Rugh M, Feraud M, Avasarala S, Kurylo J, Gutierrez M, Jimenez K, Truong N, Holden PA, Grant SB, Liu H, Ambrose RF, Jay JA. Influence of soil characteristics and metal(loid)s on antibiotic resistance genes in green stormwater infrastructure in Southern California. Journal of Hazardous Materials. 424: 127469. PMID 34655877 DOI: 10.1016/j.jhazmat.2021.127469  0.289
2011 Cao Y, Van De Werfhorst LC, Sercu B, Murray JL, Holden PA. Application of an integrated community analysis approach for microbial source tracking in a coastal creek. Environmental Science & Technology. 45: 7195-201. PMID 21786742 DOI: 10.1021/es201118r  0.28
2011 Sercu B, Van De Werfhorst LC, Murray JL, Holden PA. Terrestrial sources homogenize bacterial water quality during rainfall in two urbanized watersheds in Santa Barbara, CA. Microbial Ecology. 62: 574-83. PMID 21617896 DOI: 10.1007/s00248-011-9874-z  0.279
2006 Cao Y, Cherr GN, Córdova-Kreylos AL, Fan TW, Green PG, Higashi RM, Lamontagne MG, Scow KM, Vines CA, Yuan J, Holden PA. Relationships between sediment microbial communities and pollutants in two California salt marshes. Microbial Ecology. 52: 619-33. PMID 17072678 DOI: 10.1007/S00248-006-9093-1  0.271
2013 Sercu B, Jones AD, Wu CH, Escobar MH, Serlin CL, Knapp TA, Andersen GL, Holden PA. The influence of in situ chemical oxidation on microbial community composition in groundwater contaminated with chlorinated solvents. Microbial Ecology. 65: 39-49. PMID 22864851 DOI: 10.1007/S00248-012-0092-0  0.264
2016 Shatkin JA, Ong KJ, Beaudrie C, Clippinger AJ, Hendren CO, Haber LT, Hill M, Holden P, Kennedy AJ, Kim B, MacDonell M, Powers CM, Sharma M, Sheremeta L, Stone V, et al. Advancing Risk Analysis for Nanoscale Materials: Report from an International Workshop on the Role of Alternative Testing Strategies for Advancement. Risk Analysis : An Official Publication of the Society For Risk Analysis. PMID 27510619 DOI: 10.1111/Risa.12683  0.264
2009 Godwin HA, Chopra K, Bradley KA, Cohen Y, Harthorn BH, Hoek EM, Holden P, Keller AA, Lenihan HS, Nisbet RM, Nel AE. The University of California Center for the Environmental Implications of Nanotechnology. Environmental Science & Technology. 43: 6453-7. PMID 19764201 DOI: 10.1021/Es8034544  0.261
2012 Ivask A, Suarez E, Patel T, Boren D, Ji Z, Holden P, Telesca D, Damoiseaux R, Bradley KA, Godwin H. Genome-wide bacterial toxicity screening uncovers the mechanisms of toxicity of a cationic polystyrene nanomaterial. Environmental Science & Technology. 46: 2398-405. PMID 22148163 DOI: 10.1021/Es203087M  0.26
2010 Clarke S, Mielke RE, Neal A, Holden P, Nadeau JL. Bacterial and mineral elements in an arctic biofilm: a correlative study using fluorescence and electron microscopy. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 16: 153-65. PMID 20100386 DOI: 10.1017/S1431927609991334  0.259
2015 Godwin H, Nameth C, Avery D, Bergeson LL, Bernard D, Beryt E, Boyes W, Brown S, Clippinger AJ, Cohen Y, Doa M, Hendren CO, Holden P, Houck K, Kane AB, et al. Nanomaterial categorization for assessing risk potential to facilitate regulatory decision-making. Acs Nano. 9: 3409-17. PMID 25791861 DOI: 10.1021/Acsnano.5B00941  0.256
2008 Cao Y, Green PG, Holden PA. Microbial community composition and denitrifying enzyme activities in salt marsh sediments. Applied and Environmental Microbiology. 74: 7585-95. PMID 18978080 DOI: 10.1128/AEM.01221-08  0.244
2013 Hernandez-Viezcas JA, Castillo-Michel H, Andrews JC, Cotte M, Rico C, Peralta-Videa JR, Ge Y, Priester JH, Holden PA, Gardea-Torresdey JL. In situ synchrotron X-ray fluorescence mapping and speciation of CeOâ‚‚ and ZnO nanoparticles in soil cultivated soybean (Glycine max). Acs Nano. 7: 1415-23. PMID 23320560 DOI: 10.1021/Nn305196Q  0.243
2006 Córdova-Kreylos AL, Cao Y, Green PG, Hwang HM, Kuivila KM, Lamontagne MG, Van De Werfhorst LC, Holden PA, Scow KM. Diversity, composition, and geographical distribution of microbial communities in California salt marsh sediments. Applied and Environmental Microbiology. 72: 3357-66. PMID 16672478 DOI: 10.1128/Aem.72.5.3357-3366.2006  0.24
2020 Li D, Van De Werfhorst LC, Dunne T, Devarajan N, Ayala TG, Holden PA. Surf zone microbiological water quality following emergency beach nourishment using sediments from a catastrophic debris flow. Water Research. 176: 115733. PMID 32234606 DOI: 10.1016/J.Watres.2020.115733  0.237
2022 Li D, Van De Werfhorst LC, Steets B, Ervin J, Murray JLS, Smith J, Holden PA. Assessing multiple fecal sources to surf zone waters of two recreational beaches by bacterial community analysis. Water Research. 221: 118781. PMID 35759849 DOI: 10.1016/j.watres.2022.118781  0.237
2004 Steinberger RE, Holden PA. Macromolecular composition of unsaturated Pseudomonas aeruginosa biofilms with time and carbon source Biofilms. 1: 37-47. DOI: 10.1017/S1479050503001066  0.222
2010 Wu CH, Sercu B, Van de Werfhorst LC, Wong J, DeSantis TZ, Brodie EL, Hazen TC, Holden PA, Andersen GL. Characterization of coastal urban watershed bacterial communities leads to alternative community-based indicators. Plos One. 5: e11285. PMID 20585654 DOI: 10.1371/Journal.Pone.0011285  0.215
2021 Mortimer M, Wang Y, Holden PA. Molecular Mechanisms of Nanomaterial-Bacterial Interactions Revealed by Omics-The Role of Nanomaterial Effect Level. Frontiers in Bioengineering and Biotechnology. 9: 683520. PMID 34195180 DOI: 10.3389/fbioe.2021.683520  0.209
2021 Liu YJ, Jing Z, Bai XT, Diao QY, Wang J, Wu YY, Zhao Q, Xia T, Xing B, Holden PA, Ge Y. Nano-LaO Induces Honeybee () Death and Enriches for Pathogens in Honeybee Gut Bacterial Communities. Frontiers in Microbiology. 12: 780943. PMID 34925285 DOI: 10.3389/fmicb.2021.780943  0.206
2004 LaMontagne MG, Holden PA. Comparison of free-living and particle-associated bacterial communities in a coastal lagoon. Microbial Ecology. 46: 228-37. PMID 14708747 DOI: 10.1007/s00248-001-1072-y  0.205
2014 Priester JH, Van De Werfhorst LC, Ge Y, Adeleye AS, Tomar S, Tom LM, Piceno YM, Andersen GL, Holden PA. Effects of TiO2 and Ag nanoparticles on polyhydroxybutyrate biosynthesis by activated sludge bacteria. Environmental Science & Technology. 48: 14712-20. PMID 25409530 DOI: 10.1021/es504117x  0.201
2014 Ervin JS, Van De Werfhorst LC, Murray JL, Holden PA. Microbial source tracking in a coastal California watershed reveals canines as controllable sources of fecal contamination. Environmental Science & Technology. 48: 9043-52. PMID 25055204 DOI: 10.1021/es502173s  0.196
2014 Peralta-Videa JR, Hernandez-Viezcas JA, Zhao L, Diaz BC, Ge Y, Priester JH, Holden PA, Gardea-Torresdey JL. Cerium dioxide and zinc oxide nanoparticles alter the nutritional value of soil cultivated soybean plants. Plant Physiology and Biochemistry : Ppb / Sociã©Tã© Franã§Aise De Physiologie Vã©Gã©Tale. 80: 128-35. PMID 24751400 DOI: 10.1016/J.Plaphy.2014.03.028  0.195
2002 Steinberger RE, Allen AR, Hansma HG, Holden PA. Elongation correlates with nutrient deprivation in Pseudomonas aeruginosa - Unsaturated biofilms Microbial Ecology. 43: 416-423. PMID 12043001 DOI: 10.1007/s00248-001-1063-z  0.193
2016 Mortimer M, Petersen EJ, Buchholz BA, Holden PA. Separation of Bacteria, Protozoa and Carbon Nanotubes by Density Gradient Centrifugation. Nanomaterials (Basel, Switzerland). 6. PMID 27917301 DOI: 10.3390/nano6100181  0.191
2014 Van De Werfhorst LC, Murray JL, Reynolds S, Reynolds K, Holden PA. Canine scent detection and microbial source tracking of human waste contamination in storm drains. Water Environment Research : a Research Publication of the Water Environment Federation. 86: 550-8. PMID 25109201  0.184
2002 Holden PA, LaMontagne MG, Bruce AK, Miller WG, Lindow SE. Assessing the role of Pseudomonas aeruginosa surface-active gene expression in hexadecane biodegradation in sand. Applied and Environmental Microbiology. 68: 2509-18. PMID 11976128 DOI: 10.1128/Aem.68.5.2509-2518.2002  0.182
2013 Cao Y, Van De Werfhorst LC, Scott EA, Raith MR, Holden PA, Griffith JF. Bacteroidales terminal restriction fragment lengthpolymorphism (TRFLP) for fecal source differentiation in comparison to and in combination with universal bacteria TRFLP Water Research. 47: 6944-6955. PMID 23880219 DOI: 10.1016/j.watres.2013.03.060  0.182
2013 Ebentier DL, Hanley KT, Cao Y, Badgley BD, Boehm AB, Ervin JS, Goodwin KD, Gourmelon M, Griffith JF, Holden PA, Kelty CA, Lozach S, McGee C, Peed LA, Raith M, et al. Evaluation of the repeatability and reproducibility of a suite of qPCR-based microbial source tracking methods. Water Research. 47: 6839-48. PMID 23911226 DOI: 10.1016/J.Watres.2013.01.060  0.177
2004 LaMontagne MG, Leifer I, Bergmann S, Van De Werfhorst LC, Holden PA. Bacterial diversity in marine hydrocarbon seep sediments. Environmental Microbiology. 6: 799-808. PMID 15250882 DOI: 10.1111/J.1462-2920.2004.00613.X  0.175
2011 Sercu B, Van De Werfhorst LC, Murray JL, Holden PA. Cultivation-independent analysis of bacteria in IDEXX Quanti-Tray/2000 fecal indicator assays. Applied and Environmental Microbiology. 77: 627-33. PMID 21097584 DOI: 10.1128/AEM.01113-10  0.174
2013 Ervin JS, Russell TL, Layton BA, Yamahara KM, Wang D, Sassoubre LM, Cao Y, Kelty CA, Sivaganesan M, Boehm AB, Holden PA, Weisberg SB, Shanks OC. Characterization of fecal concentrations in human and other animal sources by physical, culture-based, and quantitative real-time PCR methods. Water Research. 47: 6873-82. PMID 23871252 DOI: 10.1016/J.Watres.2013.02.060  0.174
2010 Litton RM, Ahn JH, Sercu B, Holden PA, Sedlak DL, Grant SB. Evaluation of chemical, molecular, and traditional markers of fecal contamination in an effluent dominated urban stream. Environmental Science & Technology. 44: 7369-75. PMID 20839837 DOI: 10.1021/Es101092G  0.171
2011 Sercu B, Van De Werfhorst LC, Murray JL, Holden PA. Sewage exfiltration as a source of storm drain contamination during dry weather in urban watersheds. Environmental Science & Technology. 45: 7151-7. PMID 21786744 DOI: 10.1021/es200981k  0.169
2022 Rugh MB, Grant SB, Hung WC, Jay JA, Parker EA, Feraud M, Li D, Avasarala S, Holden PA, Liu H, Rippy MA, Werfhorst LCV, Kefela T, Peng J, Shao S, et al. Highly variable removal of pathogens, antibiotic resistance genes, conventional fecal indicators and human-associated fecal source markers in a pilot-scale stormwater biofilter operated under realistic stormflow conditions. Water Research. 219: 118525. PMID 35533621 DOI: 10.1016/j.watres.2022.118525  0.168
1999 Hansma HG, Chen C, Golan R, Pietrasanta L, Sorenson C, Auerbach I, Holden P. Probing Biomaterials with the Atomic Force Microscope Microscopy and Microanalysis. 5: 1012-1013. DOI: 10.1017/S1431927600018389  0.167
2020 Mortimer M, Li D, Wang Y, Holden PA. Physical Properties of Carbon Nanomaterials and Nanoceria Affect Pathways Important to the Nodulation Competitiveness of the Symbiotic N -Fixing Bacterium Bradyrhizobium diazoefficiens. Small (Weinheim An Der Bergstrasse, Germany). e1906055. PMID 31899607 DOI: 10.1002/smll.201906055  0.167
2013 Sinigalliano CD, Ervin JS, Van De Werfhorst LC, Badgley BD, Ballesté E, Bartkowiak J, Boehm AB, Byappanahalli M, Goodwin KD, Gourmelon M, Griffith J, Holden PA, Jay J, Layton B, Lee C, et al. Multi-laboratory evaluations of the performance of Catellicoccus marimammalium PCR assays developed to target gull fecal sources. Water Research. 47: 6883-96. PMID 23916157 DOI: 10.1016/J.Watres.2013.02.059  0.164
2021 Li D, Van De Werfhorst LC, Steets B, Ervin J, Murray JLS, Devarajan N, Holden PA. Bather Shedding as a Source of Human Fecal Markers to a Recreational Beach Frontiers in Microbiology. 12. DOI: 10.3389/fmicb.2021.673190  0.164
2021 Li D, Van De Werfhorst LC, Steets B, Ervin J, Murray JLS, Devarajan N, Holden PA. Bather Shedding as a Source of Human Fecal Markers to a Recreational Beach. Frontiers in Microbiology. 12: 673190. PMID 34248883 DOI: 10.3389/fmicb.2021.673190  0.163
2011 Thomas CR, George S, Horst AM, Ji Z, Miller RJ, Peralta-Videa JR, Xia T, Pokhrel S, Mädler L, Gardea-Torresdey JL, Holden PA, Keller AA, Lenihan HS, Nel AE, Zink JI. Nanomaterials in the environment: from materials to high-throughput screening to organisms. Acs Nano. 5: 13-20. PMID 21261306 DOI: 10.1021/Nn1034857  0.163
2003 Field KG, Chern EC, Dick LK, Fuhrman J, Griffith J, Holden PA, LaMontagne MG, Le J, Olson B, Simonich MT. A comparative study of culture-independent, library-independent genotypic methods of fecal source tracking. Journal of Water and Health. 1: 181-94. PMID 15382723 DOI: 10.2166/Wh.2003.0020  0.161
2016 Holden PA, Gardea-Torresdey J, Klaessig F, Turco RF, Mortimer M, Hund-Rinke K, Cohen Hubal EA, Avery D, Barcelo D, Behra R, Cohen Y, Deydier-Stephan L, Ferguson PL, Fernandes TF, Herr Harthorn B, et al. Considerations of Environmentally Relevant Test Conditions for Improved Evaluation of Ecological Hazards of Engineered Nanomaterials. Environmental Science & Technology. PMID 27177237 DOI: 10.1021/Acs.Est.6B00608  0.16
2020 Mortimer M, Winchell A, Holden PA. Evaluation of frameworks proposed as protective of antimicrobial resistance propagation in the environment. Environment International. 144: 106053. PMID 32861164 DOI: 10.1016/j.envint.2020.106053  0.16
2023 Li D, Van De Werfhorst LC, Ervin J, Poresky A, Steets B, Rivers C, Sharp G, Smith J, Holden PA. Municipal separate storm sewer system (MS4) dry weather flows and potential flow sources as assessed by conventional and advanced bacterial analyses. Environmental Pollution (Barking, Essex : 1987). 337: 122521. PMID 37678735 DOI: 10.1016/j.envpol.2023.122521  0.16
2021 Li D, Van De Werfhorst LC, Steets B, Ervin J, Murray JLS, Blackwell A, Devarajan N, Holden PA. Sources of Low Level Human Fecal Markers in Recreational Waters of Two Santa Barbara, CA Beaches: Roles of WWTP Outfalls and Swimmers. Water Research. 202: 117378. PMID 34246990 DOI: 10.1016/j.watres.2021.117378  0.16
2012 Klanjscek T, Nisbet RM, Priester JH, Holden PA. Modeling physiological processes that relate toxicant exposure and bacterial population dynamics. Plos One. 7: e26955. PMID 22328915 DOI: 10.1371/journal.pone.0026955  0.159
2013 Layton BA, Cao Y, Ebentier DL, Hanley K, Ballesté E, Brandão J, Byappanahalli M, Converse R, Farnleitner AH, Gentry-Shields J, Gidley ML, Gourmelon M, Lee CS, Lee J, Lozach S, ... ... Holden PA, et al. Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study. Water Research. 47: 6897-908. PMID 23992621 DOI: 10.1016/J.Watres.2013.05.060  0.159
2017 Klanjscek T, Muller EB, Holden PA, Nisbet RM. Host-symbiont interaction model explains non-monotonic response of soybean growth and seed production to nano-CeO2 exposure. Environmental Science & Technology. PMID 28333444 DOI: 10.1021/acs.est.6b06618  0.158
2016 Roehrdanz PR, Feraud M, Lee DG, Means JC, Snyder SA, Holden PA. Spatial models of sewer pipe leakage predict the occurrence of wastewater indicators in shallow urban groundwater. Environmental Science & Technology. PMID 27998057 DOI: 10.1021/Acs.Est.6B05015  0.155
2002 LaMontagne MG, Michel FC, Holden PA, Reddy CA. Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from compost for microbial community analysis. Journal of Microbiological Methods. 49: 255-64. PMID 11869790  0.154
2013 Schriewer A, Goodwin KD, Sinigalliano CD, Cox AM, Wanless D, Bartkowiak J, Ebentier DL, Hanley KT, Ervin J, Deering LA, Shanks OC, Peed LA, Meijer WG, Griffith JF, SantoDomingo J, ... ... Holden PA, et al. Performance evaluation of canine-associated Bacteroidales assays in a multi-laboratory comparison study. Water Research. 47: 6909-20. PMID 23916711 DOI: 10.1016/J.Watres.2013.03.062  0.153
2013 Raith MR, Kelty CA, Griffith JF, Schriewer A, Wuertz S, Mieszkin S, Gourmelon M, Reischer GH, Farnleitner AH, Ervin JS, Holden PA, Ebentier DL, Jay JA, Wang D, Boehm AB, et al. Comparison of PCR and quantitative real-time PCR methods for the characterization of ruminant and cattle fecal pollution sources. Water Research. 47: 6921-8. PMID 23871256 DOI: 10.1016/J.Watres.2013.03.061  0.151
2015 Lee DG, Roehrdanz PR, Feraud M, Ervin J, Anumol T, Jia A, Park M, Tamez C, Morelius EW, Gardea-Torresdey JL, Izbicki J, Means JC, Snyder SA, Holden PA. Wastewater compounds in urban shallow groundwater wells correspond to exfiltration probabilities of nearby sewers. Water Research. 85: 467-475. PMID 26379202 DOI: 10.1016/J.Watres.2015.08.048  0.15
2018 Mortimer M, Devarajan N, Li D, Holden PA. Multiwall Carbon Nanotubes Induce More Pronounced Transcriptomic Responses in Pseudomonas aeruginosa PG201 than Graphene, Exfoliated Boron Nitride or Carbon Black. Acs Nano. PMID 29455524 DOI: 10.1021/acsnano.7b08977  0.149
2023 Li D, Quon H, Ervin J, Jiang S, Rosso D, Van De Werfhorst LC, Steets B, Holden PA. Modeled and measured SARS-CoV-2 virus in septic tank systems for wastewater surveillance. Journal of Water and Health. 21: 1242-1256. PMID 37756192 DOI: 10.2166/wh.2023.128  0.146
2005 Steinberger RE, Holden PA. Extracellular DNA in single- and multiple-species unsaturated biofilms. Applied and Environmental Microbiology. 71: 5404-10. PMID 16151131 DOI: 10.1128/AEM.71.9.5404-5410.2005  0.144
2012 von der Kammer F, Ferguson PL, Holden PA, Masion A, Rogers KR, Klaine SJ, Koelmans AA, Horne N, Unrine JM. Analysis of engineered nanomaterials in complex matrices (environment and biota): general considerations and conceptual case studies. Environmental Toxicology and Chemistry / Setac. 31: 32-49. PMID 22021021 DOI: 10.1002/Etc.723  0.141
2013 Boehm AB, Van De Werfhorst LC, Griffith JF, Holden PA, Jay JA, Shanks OC, Wang D, Weisberg SB. Performance of forty-one microbial source tracking methods: a twenty-seven lab evaluation study. Water Research. 47: 6812-28. PMID 23880218 DOI: 10.1016/J.Watres.2012.12.046  0.141
2018 Wang Y, Mortimer M, Chang CH, Holden PA. Alginic Acid-Aided Dispersion of Carbon Nanotubes, Graphene, and Boron Nitride Nanomaterials for Microbial Toxicity Testing. Nanomaterials (Basel, Switzerland). 8. PMID 29385723 DOI: 10.3390/nano8020076  0.14
2014 Holden PA, Klaessig F, Turco RF, Priester JH, Rico CM, Avila-Arias H, Mortimer M, Pacpaco K, Gardea-Torresdey JL. Evaluation of exposure concentrations used in assessing manufactured nanomaterial environmental hazards: are they relevant? Environmental Science & Technology. 48: 10541-51. PMID 25158225 DOI: 10.1021/Es502440S  0.138
2009 Sercu B, Van De Werfhorst LC, Murray J, Holden PA. Storm drains are sources of human fecal pollution during dry weather in three urban southern California watersheds. Environmental Science & Technology. 43: 293-8. PMID 19238954 DOI: 10.1021/ES801505P  0.137
2013 Xia T, Malasarn D, Lin S, Ji Z, Zhang H, Miller RJ, Keller AA, Nisbet RM, Harthorn BH, Godwin HA, Lenihan HS, Liu R, Gardea-Torresdey J, Cohen Y, Mädler L, ... Holden PA, et al. Implementation of a multidisciplinary approach to solve complex nano EHS problems by the UC Center for the Environmental Implications of Nanotechnology. Small (Weinheim An Der Bergstrasse, Germany). 9: 1428-43. PMID 23027589 DOI: 10.1002/Smll.201201700  0.133
2016 Mortimer M, Petersen EJ, Buchholz BA, Orias E, Holden PA. Bioaccumulation of Multiwall Carbon Nanotubes in Tetrahymena thermophila by Direct Feeding or Trophic Transfer. Environmental Science & Technology. PMID 27398725 DOI: 10.1021/Acs.Est.6B01916  0.131
2003 Steets BM, Holden PA. A mechanistic model of runoff-associated fecal coliform fate and transport through a coastal lagoon. Water Research. 37: 589-608. PMID 12688694 DOI: 10.1016/S0043-1354(02)00312-3  0.131
2013 Mielke RE, Priester JH, Werlin RA, Gelb J, Horst AM, Orias E, Holden PA. Differential growth of and nanoscale TiO₂ accumulation in Tetrahymena thermophila by direct feeding versus trophic transfer from Pseudomonas aeruginosa. Applied and Environmental Microbiology. 79: 5616-24. PMID 23851096 DOI: 10.1128/Aem.01680-13  0.129
2013 Horst AM, Vukanti R, Priester JH, Holden PA. An assessment of fluorescence- and absorbance-based assays to study metal-oxide nanoparticle ROS production and effects on bacterial membranes. Small (Weinheim An Der Bergstrasse, Germany). 9: 1753-64. PMID 22961674 DOI: 10.1002/smll.201201455  0.129
2007 Ehrhardt CJ, Haymon RM, Lamontagne MG, Holden PA. Evidence for hydrothermal Archaea within the basaltic flanks of the East Pacific Rise. Environmental Microbiology. 9: 900-12. PMID 17359262 DOI: 10.1111/J.1462-2920.2006.01211.X  0.127
2006 Priester JH, Horst AM, Van de Werfhorst LC, Saleta JL, Mertes LA, Holden PA. Enhanced visualization of microbial biofilms by staining and environmental scanning electron microscopy. Journal of Microbiological Methods. 68: 577-87. PMID 17196692 DOI: 10.1016/J.MIMET.2006.10.018  0.127
2011 Werlin R, Priester JH, Mielke RE, Krämer S, Jackson S, Stoimenov PK, Stucky GD, Cherr GN, Orias E, Holden PA. Biomagnification of cadmium selenide quantum dots in a simple experimental microbial food chain. Nature Nanotechnology. 6: 65-71. PMID 21170041 DOI: 10.1038/Nnano.2010.251  0.126
2010 Horst AM, Neal AC, Mielke RE, Sislian PR, Suh WH, Mädler L, Stucky GD, Holden PA. Dispersion of TiO2 nanoparticle agglomerates by Pseudomonas aeruginosa Applied and Environmental Microbiology. 76: 7292-7298. PMID 20851981 DOI: 10.1128/Aem.00324-10  0.125
2017 Zimmer-Faust AG, Thulsiraj V, Marambio-Jones C, Cao Y, Griffith JF, Holden PA, Jay JA. Effect of freshwater sediment characteristics on the persistence of fecal indicator bacteria and genetic markers within a Southern California watershed. Water Research. 119: 1-11. PMID 28433878 DOI: 10.1016/j.watres.2017.04.028  0.125
2015 Kaweeteerawat C, Ivask A, Liu R, Zhang H, Chang CH, Low-Kam C, Fischer H, Ji Z, Pokhrel S, Cohen Y, Telesca D, Zink J, Mädler L, Holden PA, Nel A, et al. Toxicity of metal oxide nanoparticles in Escherichia coli correlates with conduction band and hydration energies. Environmental Science & Technology. 49: 1105-12. PMID 25563693 DOI: 10.1021/Es504259S  0.124
2023 Duttagupta S, Nynas K, Richardot W, Salam SB, Pennington M, Wong J, Van De Werfhorst LC, Dodder NG, Novotny T, Sant K, Holden PA, Hoh E. Influence of tobacco product wastes in a protected coastal reserve adjacent to urbanization. Marine Pollution Bulletin. 199: 115929. PMID 38141586 DOI: 10.1016/j.marpolbul.2023.115929  0.121
2014 Riedel TE, Zimmer-Faust AG, Thulsiraj V, Madi T, Hanley KT, Ebentier DL, Byappanahalli M, Layton B, Raith M, Boehm AB, Griffith JF, Holden PA, Shanks OC, Weisberg SB, Jay JA. Detection limits and cost comparisons of human- and gull-associated conventional and quantitative PCR assays in artificial and environmental waters. Journal of Environmental Management. 136: 112-20. PMID 24583609 DOI: 10.1016/J.Jenvman.2014.01.029  0.12
2000 Auerbach ID, Sorensen C, Hansma HG, Holden PA. Physical morphology and surface properties of unsaturated Pseudomonas putida biofilms. Journal of Bacteriology. 182: 3809-15. PMID 10850998 DOI: 10.1128/JB.182.13.3809-3815.2000  0.118
2020 Ouyang K, Mortimer M, Holden PA, Cai P, Wu Y, Gao C, Huang Q. Towards a better understanding of Pseudomonas putida biofilm formation in the presence of ZnO nanoparticles (NPs): Role of NP concentration. Environment International. 137: 105485. PMID 32004708 DOI: 10.1016/j.envint.2020.105485  0.117
2009 Priester JH, Stoimenov PK, Mielke RE, Webb SM, Ehrhardt C, Zhang JP, Stucky GD, Holden PA. Effects of soluble cadmium salts versus CdSe quantum dots on the growth of planktonic Pseudomonas aeruginosa. Environmental Science & Technology. 43: 2589-94. PMID 19452921 DOI: 10.1021/Es802806N  0.117
2006 Priester JH, Olson SG, Webb SM, Neu MP, Hersman LE, Holden PA. Enhanced exopolymer production and chromium stabilization in Pseudomonas putida unsaturated biofilms. Applied and Environmental Microbiology. 72: 1988-96. PMID 16517647 DOI: 10.1128/Aem.72.3.1988-1996.2006  0.116
2014 Priester JH, Singhal A, Wu B, Stucky GD, Holden PA. Integrated approach to evaluating the toxicity of novel cysteine-capped silver nanoparticles to Escherichia coli and Pseudomonas aeruginosa. The Analyst. 139: 954-63. PMID 24343373 DOI: 10.1039/C3An01648J  0.112
2013 Engeman CD, Baumgartner L, Carr BM, Fish AM, Meyerhofer JD, Satterfield TA, Holden PA, Harthorn BH. The hierarchy of environmental health and safety practices in the U.S. nanotechnology workplace. Journal of Occupational and Environmental Hygiene. 10: 487-95. PMID 23927041 DOI: 10.1080/15459624.2013.818231  0.112
2013 Klanjscek T, Nisbet RM, Priester JH, Holden PA. Dynamic energy budget approach to modeling mechanisms of CdSe quantum dot toxicity. Ecotoxicology (London, England). 22: 319-30. PMID 23291788 DOI: 10.1007/s10646-012-1028-7  0.111
2017 Holden PA. DEB modeling for nanotoxicology, microbial ecology, and environmental engineering: Comment on: "Physics of metabolic organization" by Marko Jusup et al. Physics of Life Reviews. 20: 49-51. PMID 28108123 DOI: 10.1016/j.plrev.2017.01.013  0.109
2011 Van De Werfhorst LC, Sercu B, Holden PA. Comparison of the host specificities of two bacteroidales quantitative PCR assays used for tracking human fecal contamination. Applied and Environmental Microbiology. 77: 6258-60. PMID 21742921 DOI: 10.1128/AEM.00239-11  0.109
2011 Sercu B, Van De Werfhorst LC, Murray JLS, Holden PA. Erratum to: Terrestrial Sources Homogenize Bacterial Water Quality During Rainfall in Two Urbanized Watersheds in Santa Barbara, CA Microbial Ecology. 62: 238-239. DOI: 10.1007/s00248-011-9908-6  0.109
2021 McClary-Gutierrez JS, Mattioli MC, Marcenac P, Silverman AI, Boehm AB, Bibby K, Balliet M, de Los Reyes FL, Gerrity D, Griffith JF, Holden PA, Katehis D, Kester G, LaCross N, Lipp EK, et al. SARS-CoV-2 Wastewater Surveillance for Public Health Action. Emerging Infectious Diseases. 27: 1-8. PMID 34424162 DOI: 10.3201/eid2709.210753  0.107
2016 Garonzik SM, Lenhard JR, Forrest A, Holden PN, Bulitta JB, Tsuji BT. Defining the Active Fraction of Daptomycin against Methicillin-Resistant Staphylococcus aureus (MRSA) Using a Pharmacokinetic and Pharmacodynamic Approach. Plos One. 11: e0156131. PMID 27284923 DOI: 10.1371/journal.pone.0156131  0.106
2008 Conti JA, Killpack K, Gerritzen G, Huang L, Mircheva M, Delmas M, Harthorn BH, Appelbaum RP, Holden PA. Health and safety practices in the nanomaterials workplace: results from an international survey. Environmental Science & Technology. 42: 3155-62. PMID 18522088 DOI: 10.1021/Es702158Q  0.106
2006 Ostomel TA, Stoimenov PK, Holden PA, Alam HB, Stucky GD. Host-guest composites for induced hemostasis and therapeutic healing in traumatic injuries. Journal of Thrombosis and Thrombolysis. 22: 55-67. PMID 16786234 DOI: 10.1007/s11239-006-7658-y  0.106
2022 Smith NM, Boissonneault KR, Chen L, Petraitis V, Petraitiene R, Tao X, Zhou J, Lang Y, Kavaliauskas P, Bulman ZP, Holden PN, Cha R, Bulitta JB, Kreiswirth BN, Walsh TJ, et al. Mechanistic Insights to Combating NDM- and CTX-M-Coproducing Klebsiella pneumoniae by Targeting Cell Wall Synthesis and Outer Membrane Integrity. Antimicrobial Agents and Chemotherapy. e0052722. PMID 35924913 DOI: 10.1128/aac.00527-22  0.104
2023 Vignardi CP, Adeleye AS, Kayal M, Oranu E, Miller RJ, Keller AA, Holden PA, Lenihan HS. Aging of Copper Nanoparticles in the Marine Environment Regulates Toxicity for a Coastal Phytoplankton Species. Environmental Science & Technology. PMID 37083408 DOI: 10.1021/acs.est.2c07953  0.099
2001 Holden PA. Biofilms in unsaturated environments. Methods in Enzymology. 337: 125-43. PMID 11398425 DOI: 10.1016/S0076-6879(01)37011-8  0.098
2019 Gao CH, Mortimer M, Zhang M, Holden PA, Cai P, Wu S, Xin Y, Wu Y, Huang Q. Impact of metal oxide nanoparticles on in vitro DNA amplification. Peerj. 7: e7228. PMID 31293839 DOI: 10.7717/peerj.7228  0.097
2017 Bulman ZP, Chen L, Walsh TJ, Satlin MJ, Qian Y, Bulitta JB, Peloquin CA, Holden PN, Nation RL, Li J, Kreiswirth BN, Tsuji BT. Polymyxin Combinations Combat Escherichia coli Harboring mcr-1 and blaNDM-5: Preparation for a Postantibiotic Era. Mbio. 8. PMID 28743810 DOI: 10.1128/Mbio.00540-17  0.096
2016 Hartline NL, Bruce NJ, Karba SN, Ruff EO, Sonar SU, Holden PA. Microfiber Masses Recovered from Conventional Machine Washing of New or Aged Garments. Environmental Science & Technology. 50: 11532-11538. PMID 27689236 DOI: 10.1021/acs.est.6b03045  0.094
2012 Engeman CD, Baumgartner L, Carr BM, Fish AM, Meyerhofer JD, Satterfield TA, Holden PA, Harthorn BH. Governance implications of nanomaterials companies' inconsistent risk perceptions and safety practices Journal of Nanoparticle Research. 14: 1-12. DOI: 10.1007/S11051-012-0749-0  0.091
2022 Li D, Van De Werfhorst LC, Holden PA. Genetic Sequence Data Evidence that Human Fecal-associated HF183 sequences Are on Human Skin and in Urine. Journal of Applied Microbiology. PMID 35429105 DOI: 10.1111/jam.15577  0.091
2020 Bivins A, North D, Ahmad A, Ahmed W, Alm E, Been F, Bhattacharya P, Bijlsma L, Boehm AB, Brown J, Buttiglieri G, Calabro V, Carducci A, Castiglioni S, Cetecioglu Gurol Z, ... ... Holden PA, et al. Wastewater-Based Epidemiology: Global Collaborative to Maximize Contributions in the Fight Against COVID-19. Environmental Science & Technology. PMID 32530639 DOI: 10.1021/Acs.Est.0C02388  0.089
2020 Pierce G, Gmoser-Daskalakis K, Jessup K, Grant SB, Mehring A, Winfrey B, Rippy MA, Feldman D, Holden P, Ambrose R, Levin L. University Stormwater Management within Urban Environmental Regulatory Regimes: Barriers to Progressivity or Opportunities to Innovate? Environmental Management. PMID 33150485 DOI: 10.1007/s00267-020-01377-3  0.085
2014 Ivask A, Elbadawy A, Kaweeteerawat C, Boren D, Fischer H, Ji Z, Chang CH, Liu R, Tolaymat T, Telesca D, Zink JI, Cohen Y, Holden PA, Godwin HA. Toxicity mechanisms in Escherichia coli vary for silver nanoparticles and differ from ionic silver. Acs Nano. 8: 374-86. PMID 24341736 DOI: 10.1021/Nn4044047  0.084
2012 Priester JH, Mielke RE, Werlin R, Orias E, Holden PA, Gelb J. A Comparison of Nano - Scale X-Ray Microscopy and Scanning Transmission Electron Microscopy applied to TiO2 Nanoparticles in a Microbial Food Chain Microscopy and Microanalysis. 18: 556-557. DOI: 10.1017/S1431927612004631  0.081
2024 Kaur JN, Singh N, Smith NM, Klem JF, Cha R, Lang Y, Chen L, Kreiswirth B, Holden PN, Bulitta JB, Tsuji BT. Next generation antibiotic combinations to combat pan-drug resistant Klebsiella pneumoniae. Scientific Reports. 14: 3148. PMID 38326428 DOI: 10.1038/s41598-024-53130-z  0.081
2012 Horst AM, Ji Z, Holden PA. Nanoparticle dispersion in environmentally relevant culture media: a TiO2 case study and considerations for a general approach Journal of Nanoparticle Research. 14. DOI: 10.1007/s11051-012-1014-2  0.079
2016 Rao GG, Ly NS, Diep J, Forrest A, Bulitta JB, Holden PN, Nation RL, Li J, Tsuji BT. Combinatorial pharmacodynamics of polymyxin B and tigecycline against heteroresistant Acinetobacter baumannii. International Journal of Antimicrobial Agents. PMID 27449542 DOI: 10.1016/j.ijantimicag.2016.06.006  0.075
2010 Zhang Y, Shi Y, Liou YH, Sawvel AM, Sun X, Cai Y, Holden PA, Stucky GD. High performance separation of aerosol sprayed mesoporous TiO2 sub-microspheres from aggregates via density gradient centrifugation Journal of Materials Chemistry. 20: 4162-4167. DOI: 10.1039/B926183D  0.075
2016 Soon RL, Lenhard JR, Bulman ZP, Holden PN, Kelchlin P, Steenbergen JN, Friedrich LV, Forrest A, Tsuji BT. In vitro pharmacodynamic evaluation of ceftolozane/tazobactam against β-lactamase-producing Escherichia coli in a hollow-fibre infection model. International Journal of Antimicrobial Agents. PMID 27931793 DOI: 10.1016/j.ijantimicag.2016.07.015  0.074
2008 Nadeau JL, Priester JH, Stucky GD, Holden PA. Bacterial Interactions with CdSe Quantum Dots and Environmental Implications Nanoscience and Nanotechnology: Environmental and Health Impacts. 197-231. DOI: 10.1002/9780470396612.ch9  0.074
2014 Rao GG, Ly NS, Haas CE, Garonzik S, Forrest A, Bulitta JB, Kelchlin PA, Holden PN, Nation RL, Li J, Tsuji BT. New dosing strategies for an old antibiotic: pharmacodynamics of front-loaded regimens of colistin at simulated pharmacokinetics in patients with kidney or liver disease. Antimicrobial Agents and Chemotherapy. 58: 1381-8. PMID 24342636 DOI: 10.1128/Aac.00327-13  0.073
2023 Smith NM, Nguyen TD, Lodise TP, Chen L, Kaur JN, Klem JF, Boissonneault KR, Holden PN, Roach DR, Tsuji BT. Machine Learning-led Optimization of Combination Therapy: Confronting the Public Health Threat of Extensively Drug Resistant Gram Negative Bacteria. Clinical Pharmacology and Therapeutics. PMID 38062797 DOI: 10.1002/cpt.3134  0.072
2016 Tsuji BT, Landersdorfer CB, Lenhard J, Cheah SE, Thamlikitkul V, Rao GG, Holden PN, Forrest A, Bulitta JB, Nation RL, Li J. The Paradoxical Effect of Polymyxin B: High Drug Exposure Amplifies Resistance in Acinetobacter baumannii. Antimicrobial Agents and Chemotherapy. PMID 27067330 DOI: 10.1128/AAC.02831-15  0.072
2017 Bulman ZP, Ly NS, Lenhard JR, Holden PN, Bulitta JB, Tsuji BT. Influence of rhlR and lasR on Polymyxin Pharmacodynamics in Pseudomonas aeruginosa: Implications for Quorum Sensing Inhibition with Azithromycin. Antimicrobial Agents and Chemotherapy. PMID 28096154 DOI: 10.1128/Aac.00096-16  0.07
2012 Tsuji BT, Brown T, Parasrampuria R, Brazeau DA, Forrest A, Kelchlin PA, Holden PN, Peloquin CA, Hanna D, Bulitta JB. Front-loaded linezolid regimens result in increased killing and suppression of the accessory gene regulator system of Staphylococcus aureus Antimicrobial Agents and Chemotherapy. 56: 3712-3719. PMID 22526313 DOI: 10.1128/AAC.05453-11  0.066
2015 Kaweeteerawat C, Chang CH, Roy KR, Liu R, Li R, Toso D, Fischer H, Ivask A, Ji Z, Zink JI, Zhou ZH, Chanfreau GF, Telesca D, Cohen Y, Holden PA, et al. Cu Nanoparticles Have Different Impacts in Escherichia coli and Lactobacillus brevis than Their Microsized and Ionic Analogues. Acs Nano. 9: 7215-25. PMID 26168153 DOI: 10.1021/Acsnano.5B02021  0.066
2009 Ehrhardt CJ, Haymon RM, Sievert SM, Holden PA. An improved method for nanogold in situ hybridization visualized with environmental scanning electron microscopy. Journal of Microscopy. 236: 5-10. PMID 19772531 DOI: 10.1111/J.1365-2818.2009.03207.X  0.064
2016 Ly NS, Bulman ZP, Bulitta JB, Baron C, Rao GG, Holden PN, Li J, Sutton MD, Tsuji BT. Optimization of Polymyxin B in Combination with Doripenem to Combat Mutator Pseudomonas aeruginosa. Antimicrobial Agents and Chemotherapy. PMID 26926641 DOI: 10.1128/Aac.02377-15  0.064
2015 Bulman ZP, Sutton MD, Ly NS, Bulitta JB, Holden PN, Nation RL, Li J, Tsuji BT. Emergence of Polymyxin B Resistance Influences Pathogenicity in Pseudomonas aeruginosa Mutators. Antimicrobial Agents and Chemotherapy. 59: 4343-6. PMID 25918151 DOI: 10.1128/Aac.04629-14  0.063
2016 Soon RL, Lenhard JR, Bulman ZP, Holden P, Kelchlin P, Steenbergen JN, Friedrich LV, Forrest A, Tsuji BT. Combinatorial Pharmacodynamics of Ceftolozane/Tazobactam against Genotypically Defined β-lactamase Producing Escherichia coli: Insights into the PK/PD of β-lactam/β-lactamase Inhibitors. Antimicrobial Agents and Chemotherapy. PMID 26729494 DOI: 10.1128/AAC.02635-15  0.062
2021 Wartenberg AC, Holden PA, Bodwitch H, Parker-Shames P, Novotny T, Harmon TC, Hart SC, Beutel M, Gilmore M, Hoh E, Butsic V. Cannabis and the Environment: What Science Tells Us and What We Still Need to Know Environmental Science & Technology Letters. 8: 98-107. DOI: 10.1021/acs.estlett.0c00844  0.062
2015 Kaweeteerawat C, Chang CH, Roy KR, Liu R, Li R, Toso D, Fischer H, Ivask A, Ji Z, Zink JI, Zhou ZH, Chanfreau GF, Telesca D, Cohen Y, Holden PA, et al. Cu Nanoparticles Have Different Impacts in Escherichia coli and Lactobacillus brevis than Their Microsized and Ionic Analogues Acs Nano. 9: 7215-7225. DOI: 10.1021/acsnano.5b02021  0.062
2017 Bulman ZP, Satlin MJ, Chen L, Kreiswirth BN, Shin BS, Walsh TJ, Holden PN, Forrest A, Nation RL, Li J, Tsuji BT. Polymyxin B-Based Triple Combinations Wage War Against KPC-2-producing Klebsiella pneumoniae: New Dosing Strategies for Old Allies. Antimicrobial Agents and Chemotherapy. PMID 28167549 DOI: 10.1128/Aac.02023-16  0.062
2017 Smith NM, Bulman ZP, Sieron AO, Bulitta JB, Holden PN, Nation RL, Li J, Wright GD, Tsuji BT. Pharmacodynamics of dose-escalated 'front-loading' polymyxin B regimens against polymyxin-resistant mcr-1-harbouring Escherichia coli. The Journal of Antimicrobial Chemotherapy. PMID 28505268 DOI: 10.1093/Jac/Dkx121  0.061
2009 Clark DR, Alton TM, Bajorek A, Holden P, Dugatkin LA, Atlas RM, Perlin MH. Evolution of altruists and cheaters in near-isogenic populations of Escherichia coli. Frontiers in Bioscience (Landmark Edition). 14: 4815-24. PMID 19482588 DOI: 10.2741/3570  0.061
2017 Hjorth R, Holden PA, Hansen SF, Colman BP, Grieger K, Hendren CO. The role of alternative testing strategies in environmental risk assessment of engineered nanomaterials Environmental Science: Nano. 4: 292-301. DOI: 10.1039/C6En00443A  0.06
2021 Wartenberg AC, Holden PA, Bodwitch H, Parker-Shames P, Novotny T, Harmon TC, Hart SC, Beutel M, Gilmore M, Hoh E, Butsic V. Correction to “Cannabis and the Environment: What Science Tells Us and What We Still Need to Know” Environmental Science & Technology Letters. 8: 482-482. DOI: 10.1021/ACS.ESTLETT.1C00330  0.059
2018 Holden PA, Mortimer M, Wang Y. Engineered nanomaterials and symbiotic dinitrogen fixation in legumes Current Opinion in Environmental Science & Health. 6: 54-59. DOI: 10.1016/J.COESH.2018.07.012  0.057
2006 Ireland TR, Holden P, Norman MD, Clarke J. Isotopic enhancements of 17O and 18O from solar wind particles in the lunar regolith. Nature. 440: 776-8. PMID 16598252 DOI: 10.1038/nature04611  0.056
2021 Wartenberg AC, Holden PA, Bodwitch H, Parker-Shames P, Novotny T, Harmon TC, Hart SC, Beutel M, Gilmore M, Hoh E, Butsic V. Response to Comment on “Cannabis and the Environment: What Science Tells Us and What We Still Need to Know” Environmental Science & Technology Letters. 8: 486-486. DOI: 10.1021/ACS.ESTLETT.1C00329  0.055
2016 Rao GG, Ly NS, Bulitta JB, Soon RL, San Roman MD, Holden PN, Landersdorfer CB, Nation RL, Li J, Forrest A, Tsuji BT. Polymyxin B in combination with doripenem against heteroresistant Acinetobacter baumannii: pharmacodynamics of new dosing strategies. The Journal of Antimicrobial Chemotherapy. PMID 27494922 DOI: 10.1093/Jac/Dkw293  0.054
2015 Ly NS, Bulitta JB, Rao GG, Landersdorfer CB, Holden PN, Forrest A, Bergen PJ, Nation RL, Li J, Tsuji BT. Colistin and doripenem combinations against Pseudomonas aeruginosa: profiling the time course of synergistic killing and prevention of resistance. The Journal of Antimicrobial Chemotherapy. 70: 1434-42. PMID 25712313 DOI: 10.1093/Jac/Dku567  0.053
2016 Pettigrew MM, Tsuji BT, Gent JF, Kong Y, Holden PN, Sethi S, Murphy TF. Haemophilus influenzae in COPD: Effect of fluoroquinolones and macrolides on eradication and resistance. Antimicrobial Agents and Chemotherapy. PMID 27139476 DOI: 10.1128/Aac.00301-16  0.051
2020 Lodise TP, Smith NM, O'Donnell N, Eakin AE, Holden PN, Boissonneault KR, Zhou J, Tao X, Bulitta JB, Fowler VG, Chambers HF, Bonomo RA, Tsuji BT. Determining the optimal dosing of a novel combination regimen of ceftazidime/avibactam with aztreonam against NDM-1-producing Enterobacteriaceae using a hollow-fibre infection model. The Journal of Antimicrobial Chemotherapy. PMID 32464664 DOI: 10.1093/Jac/Dkaa197  0.05
2017 Tsuji BT, Fisher J, Boadi-Yeboah R, Holden PN, Sethi S, Pettigrew MM, Murphy TF. Azithromycin Pharmacodynamics against 'Persistent' Haemophilus influenza in Chronic Obstructive Pulmonary Disease. Antimicrobial Agents and Chemotherapy. PMID 29180527 DOI: 10.1128/Aac.01995-17  0.05
2015 Lenhard JR, von Eiff C, Hong IS, Holden PN, Bear MD, Suen A, Bulman ZP, Tsuji BT. Evolution of Staphylococcus aureus under vancomycin selective pressure: the role of the small-colony variant phenotype. Antimicrobial Agents and Chemotherapy. 59: 1347-51. PMID 25451045 DOI: 10.1128/AAC.04508-14  0.047
2013 Wang H, Wu F, Meng W, White JC, Holden PA, Xing B. Engineered nanoparticles may induce genotoxicity. Environmental Science & Technology. 47: 13212-4. PMID 24228618 DOI: 10.1021/Es404527D  0.044
2008 Moise PA, Smyth DS, El-Fawal N, Robinson DA, Holden PN, Forrest A, Sakoulas G. Microbiological effects of prior vancomycin use in patients with methicillin-resistant Staphylococcus aureus bacteraemia. The Journal of Antimicrobial Chemotherapy. 61: 85-90. PMID 18042628 DOI: 10.1093/jac/dkm445  0.039
2016 Lenhard JR, Bulitta JB, Connell TD, King-Lyons N, Landersdorfer CB, Cheah SE, Thamlikitkul V, Shin BS, Rao G, Holden PN, Walsh TJ, Forrest A, Nation RL, Li J, Tsuji BT. High-intensity meropenem combinations with polymyxin B: new strategies to overcome carbapenem resistance in Acinetobacter baumannii. The Journal of Antimicrobial Chemotherapy. PMID 27634916 DOI: 10.1093/Jac/Dkw355  0.031
2021 Parker EA, Grant SB, Cao Y, Rippy MA, McGuire KJ, Holden PA, Feraud M, Avasarala S, Liu H, Hung WC, Rugh M, Jay J, Peng J, Shao S, Li D. Predicting Solute Transport Through Green Stormwater Infrastructure With Unsteady Transit Time Distribution Theory Water Resources Research. 57. DOI: 10.1029/2020wr028579  0.021
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