Charles Chiu - Publications

Affiliations: 
University of California, San Francisco, San Francisco, CA 

44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Villarino E, Deng X, Kemper CA, Jorden MA, Bonin B, Rudman SL, Han GS, Yu G, Wang C, Federman S, Bushnell B, Wadford DA, Lin W, Tao Y, ... ... Chiu CY, et al. Introduction, Transmission Dynamics, and Fate of Early SARS-CoV-2 Lineages in Santa Clara County, California. The Journal of Infectious Diseases. PMID 33893501 DOI: 10.1093/infdis/jiab199  0.32
2021 Haddad AF, Hofmann JW, Oh T, Jacques L, Yu G, Chiu C, Nolan A, Strober J, Gupta N. Pathologic Findings Associated With a Case of Acute Flaccid Myelitis. Journal of Neuropathology and Experimental Neurology. 80: 484-487. PMID 33870421 DOI: 10.1093/jnen/nlab031  0.32
2020 Karmarkar E, Blanco I, Amornkul P, DuBois A, Deng X, Moonan PK, Rubenstein BL, Miller DA, Kennedy I, Yu J, Dauterman J, Ongpin M, Hathaway W, Hoo L, Trammell S, ... Chiu C, et al. Timely Intervention and Control of a Novel Coronavirus (COVID-19) Outbreak at a Large Skilled Nursing Facility - San Francisco, California, 2020. Infection Control and Hospital Epidemiology. 1-20. PMID 33308357 DOI: 10.1017/ice.2020.1375  0.32
2020 Solomon IH, Ganesh VS, Yu G, Deng XD, Wilson MR, Miller S, Milligan TA, Mukerji SS, Mathewson A, Linxweiler J, Morse D, Ritter JM, Staples JE, Hughes H, Gould CV, ... Chiu CY, et al. Fatal Case of Chronic Jamestown Canyon Virus Encephalitis Diagnosed by Metagenomic Sequencing in Patient Receiving Rituximab. Emerging Infectious Diseases. 27. PMID 33261720 DOI: 10.3201/eid2701.203448  0.32
2020 Gu W, Deng X, Lee M, Sucu YD, Arevalo S, Stryke D, Federman S, Gopez A, Reyes K, Zorn K, Sample H, Yu G, Ishpuniani G, Briggs B, Chow ED, ... Chiu CY, et al. Rapid pathogen detection by metagenomic next-generation sequencing of infected body fluids. Nature Medicine. PMID 33169017 DOI: 10.1038/s41591-020-1105-z  0.32
2020 Shah SJ, Barish PN, Prasad PA, Kistler A, Neff N, Kamm J, Li LM, Chiu CY, Babik JM, Fang MC, Kangelaris KN, Langelier C, Abe-Jones Y, Alipanah N, Alvarez FN, et al. Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19. Eclinicalmedicine. 100518. PMID 32864588 DOI: 10.1016/J.Eclinm.2020.100518  0.32
2020 Deng X, Gu W, Federman S, du Plessis L, Pybus OG, Faria N, Wang C, Yu G, Bushnell B, Pan CY, Guevara H, Sotomayor-Gonzalez A, Zorn K, Gopez A, Servellita V, ... Chiu CY, et al. Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California. Science (New York, N.Y.). PMID 32513865 DOI: 10.1126/Science.Abb9263  0.32
2020 Deng X, Gu W, Federman S, Du Plessis L, Pybus O, Faria N, Wang C, Yu G, Pan CY, Guevara H, Sotomayor-Gonzalez A, Zorn K, Gopez A, Servellita V, Hsu E, ... Chiu CY, et al. A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage. Medrxiv : the Preprint Server For Health Sciences. PMID 32511579 DOI: 10.1101/2020.03.27.20044925  0.32
2020 Shah SJ, Barish PN, Prasad PA, Kistler AL, Neff N, Kamm J, Li LM, Chiu CY, Babick JM, Fang MC, Abe-Jones Y, Alipanah N, Alvarez FN, Botvinnik OB, Davis JM, et al. Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: a comparison of patients with and without COVID-19. Medrxiv : the Preprint Server For Health Sciences. PMID 32511488 DOI: 10.1101/2020.05.02.20082461  0.32
2020 Broughton JP, Deng X, Yu G, Fasching CL, Singh J, Streithorst J, Granados A, Sotomayor-Gonzalez A, Zorn K, Gopez A, Hsu E, Gu W, Miller S, Pan CY, Guevara H, ... Chiu CY, et al. Rapid Detection of 2019 Novel Coronavirus SARS-CoV-2 Using a CRISPR-based DETECTR Lateral Flow Assay. Medrxiv : the Preprint Server For Health Sciences. PMID 32511449 DOI: 10.1101/2020.03.06.20032334  0.32
2020 Junqueira DM, Wilkinson E, Vallari AS, Deng XD, Achari A, Yu G, McArthur C, Kaptué L, Mbanya DN, Chiu C, Cloherty G, de Oliviera T, Rodgers MA. NEW GENOMES FROM THE CONGO BASIN EXPAND HISTORY OF CRF01_AE ORIGIN AND DISSEMINATION. Aids Research and Human Retroviruses. PMID 32281388 DOI: 10.1089/Aid.2020.0031  0.32
2020 Deng X, Achari A, Federman S, Yu G, Somasekar S, Bártolo I, Yagi S, Mbala-Kingebeni P, Kapetshi J, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Ahmed AA, Ganesh V, Tamhankar M, Patterson JL, ... Chiu CY, et al. Author Correction: Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance. Nature Microbiology. PMID 31965087 DOI: 10.1038/S41564-020-0671-7  0.32
2020 Deng X, Achari A, Federman S, Yu G, Somasekar S, Bártolo I, Yagi S, Mbala-Kingebeni P, Kapetshi J, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Ahmed AA, Ganesh V, Tamhankar M, Patterson JL, ... Chiu CY, et al. Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance. Nature Microbiology. PMID 31932713 DOI: 10.1038/S41564-019-0637-9  0.32
2019 Saa P, Chiu C, Grimm K, Yu G, Benjamin RJ, Corash L, Stramer SL. Acute Zika virus infection in an asymptomatic blood donor at the onset of the Puerto Rico epidemic. Transfusion. PMID 31407817 DOI: 10.1111/Trf.15484  0.32
2019 Li T, Mbala-Kingebeni P, Naccache SN, Thézé J, Bouquet J, Federman S, Somasekar S, Yu G, Sanchez-San Martin C, Achari A, Schneider BS, Rimoin AW, Rambaut A, Nsio J, Mulembakani P, ... ... Chiu C, et al. Metagenomic Next-Generation Sequencing of the 2014 Ebola Virus Disease Outbreak in the Democratic Republic of the Congo. Journal of Clinical Microbiology. PMID 31315955 DOI: 10.1128/Jcm.00827-19  0.32
2019 Wilson MR, Sample HA, Zorn KC, Arevalo S, Yu G, Neuhaus J, Federman S, Stryke D, Briggs B, Langelier C, Berger A, Douglas V, Josephson SA, Chow FC, Fulton BD, ... Chiu CY, et al. Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis. The New England Journal of Medicine. 380: 2327-2340. PMID 31189036 DOI: 10.1056/Nejmoa1803396  0.32
2019 Briggs BJ, Santos Y, Ramesh A, Grabherr M, Achari A, Yu G, Miller S, Federman S, Arevalo S, Sample H, Zorn K, Harriman K, Messenger S, Domingue S, Dominguez S, ... ... Chiu C, et al. LB14. Cerebrospinal Fluid Profiling of the Human Host Response Reveals Species-Specific Enterovirus Biosignatures in Acute Flaccid Myelitis Cases Open Forum Infectious Diseases. 6. DOI: 10.1093/Ofid/Ofz415.2497  0.32
2018 Seferovic M, Sánchez-San Martín C, Tardif SD, Rutherford J, Castro ECC, Li T, Hodara VL, Parodi LM, Giavedoni L, Layne-Colon D, Tamhankar M, Yagi S, Martyn C, Reyes K, Suter MA, ... ... Chiu CY, et al. Publisher Correction: Experimental Zika Virus Infection in the Pregnant Common Marmoset Induces Spontaneous Fetal Loss and Neurodevelopmental Abnormalities. Scientific Reports. 8: 16131. PMID 30367092 DOI: 10.1038/s41598-018-34068-5  0.32
2018 Thézé J, Li T, du Plessis L, Bouquet J, Kraemer MUG, Somasekar S, Yu G, de Cesare M, Balmaseda A, Kuan G, Harris E, Wu CH, Ansari MA, Bowden R, Faria NR, ... Chiu CY, et al. Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico. Cell Host & Microbe. PMID 29805095 DOI: 10.1016/J.Chom.2018.04.017  0.32
2018 Seferovic M, Martín CS, Tardif SD, Rutherford J, Castro ECC, Li T, Hodara VL, Parodi LM, Giavedoni L, Layne-Colon D, Tamhankar M, Yagi S, Martyn C, Reyes K, Suter MA, ... ... Chiu CY, et al. Experimental Zika Virus Infection in the Pregnant Common Marmoset Induces Spontaneous Fetal Loss and Neurodevelopmental Abnormalities. Scientific Reports. 8: 6851. PMID 29717225 DOI: 10.1038/s41598-018-25205-1  0.32
2018 Saporta-Keating SR, Simões EAF, Yu G, Federman S, Mirsky D, Dominguez SR, Chiu CY, Messacar K. A Child With Intermittent Headaches and Eosinophilic Meningitis. Journal of the Pediatric Infectious Diseases Society. PMID 29438532 DOI: 10.1093/jpids/piy005  0.32
2018 Briggs B, Federman S, Deng XD, Gu W, Yu G, Martin CSS, Miller S, Chiu CY. 2291. A Real-Time Sequencing Approach for Simultaneous Metagenomic and Transcriptomic-Based Diagnosis of Infectious Diseases Open Forum Infectious Diseases. 5. DOI: 10.1093/Ofid/Ofy210.1944  0.32
2017 Castro-Wallace SL, Chiu CY, John KK, Stahl SE, Rubins KH, McIntyre ABR, Dworkin JP, Lupisella ML, Smith DJ, Botkin DJ, Stephenson TA, Juul S, Turner DJ, Izquierdo F, Federman S, et al. Nanopore DNA Sequencing and Genome Assembly on the International Space Station. Scientific Reports. 7: 18022. PMID 29269933 DOI: 10.1038/S41598-017-18364-0  0.32
2017 Chiu CY, Sánchez-San Martín C, Bouquet J, Li T, Yagi S, Tamhankar M, Hodara VL, Parodi LM, Somasekar S, Yu G, Giavedoni LD, Tardif S, Patterson J. Experimental Zika Virus Inoculation in a New World Monkey Model Reproduces Key Features of the Human Infection. Scientific Reports. 7: 17126. PMID 29215081 DOI: 10.1038/s41598-017-17067-w  0.32
2017 Hixon AM, Yu G, Leser JS, Yagi S, Clarke P, Chiu CY, Tyler KL. A mouse model of paralytic myelitis caused by enterovirus D68. Plos Pathogens. 13: e1006199. PMID 28231269 DOI: 10.1371/Journal.Ppat.1006199  0.32
2017 Mongkolrattanothai K, Naccache SN, Bender JM, Samayoa E, Pham E, Yu G, Dien Bard J, Miller S, Aldrovandi G, Chiu CY. Neurobrucellosis: Unexpected Answer From Metagenomic Next-Generation Sequencing. Journal of the Pediatric Infectious Diseases Society. PMID 28062553 DOI: 10.1093/Jpids/Piw066  0.32
2016 Stramer SL, Yu G, Herron R, Espinoza N, Foster GA, Naccache SN, Brodsky JP, Ong E, Linnen JM, Dyer N, Styer LM, Parker MM, Chiu CY. Two human immunodeficiency virus Type 2 cases in US blood donors including serologic, molecular, and genomic characterization of an epidemiologically unusual case. Transfusion. PMID 27079968 DOI: 10.1111/Trf.13600  0.32
2016 Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Kleinschmidt-DeMasters BK, Dominguez SR, Chiu CY. Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing. Genome Medicine. 8: 1. PMID 26750923 DOI: 10.1186/S13073-015-0257-9  0.32
2015 Van Haren K, Ayscue P, Waubant E, Clayton A, Sheriff H, Yagi S, Glenn-Finer R, Padilla T, Strober JB, Aldrovandi G, Wadford DA, Chiu CY, Xia D, Harriman K, Watt JP, et al. Acute Flaccid Myelitis of Unknown Etiology in California, 2012-2015. Jama. 314: 2663-71. PMID 26720027 DOI: 10.1001/jama.2015.17275  0.32
2015 Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Klenschmidt-DeMasters BK, Dominguez SR, Chiu CY. Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing. Genome Medicine. 7: 113. PMID 26620704 DOI: 10.1186/S13073-015-0235-2  0.32
2015 Greninger AL, Naccache SN, Federman S, Yu G, Mbala P, Bres V, Stryke D, Bouquet J, Somasekar S, Linnen JM, Dodd R, Mulembakani P, Schneider BS, Muyembe-Tamfum JJ, Stramer SL, ... Chiu CY, et al. Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis. Genome Medicine. 7: 99. PMID 26416663 DOI: 10.1186/S13073-015-0220-9  0.32
2015 Chiu CY, Bres V, Yu G, Krysztof D, Naccache SN, Lee D, Pfeil J, Linnen JM, Stramer SL. Genomic Assays for Identification of Chikungunya Virus in Blood Donors, Puerto Rico, 2014. Emerging Infectious Diseases. 21: 1409-13. PMID 26196378 DOI: 10.3201/Eid2108.150458  0.32
2015 Seo S, Renaud C, Kuypers JM, Chiu CY, Huang ML, Samayoa E, Xie H, Yu G, Fisher CE, Gooley TA, Miller S, Hackman RC, Myerson D, Sedlak RH, Kim YJ, et al. Idiopathic pneumonia syndrome after hematopoietic cell transplantation: evidence of occult infectious etiologies. Blood. 125: 3789-97. PMID 25918347 DOI: 10.1182/blood-2014-12-617035  0.32
2015 Greninger AL, Naccache SN, Messacar K, Clayton A, Yu G, Somasekar S, Federman S, Stryke D, Anderson C, Yagi S, Messenger S, Wadford D, Xia D, Watt JP, Van Haren K, ... ... Chiu CY, et al. A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012-14): a retrospective cohort study. The Lancet. Infectious Diseases. 15: 671-82. PMID 25837569 DOI: 10.1016/S1473-3099(15)70093-9  0.32
2014 Wilson MR, Naccache SN, Samayoa E, Biagtan M, Bashir H, Yu G, Salamat SM, Somasekar S, Federman S, Miller S, Sokolic R, Garabedian E, Candotti F, Buckley RH, Reed KD, ... ... Chiu CY, et al. Actionable diagnosis of neuroleptospirosis by next-generation sequencing. The New England Journal of Medicine. 370: 2408-17. PMID 24896819 DOI: 10.1056/Nejmoa1401268  0.32
2013 Yu G, Yagi S, Carrion R, Chen EC, Liu M, Brasky KM, Lanford RE, Kelly KR, Bales KL, Schnurr DP, Canfield DR, Patterson JL, Chiu CY. Experimental cross-species infection of common marmosets by titi monkey adenovirus. Plos One. 8: e68558. PMID 23894316 DOI: 10.1371/Journal.Pone.0068558  0.32
2013 Chiu CY, Yagi S, Lu X, Yu G, Chen EC, Liu M, Dick EJ, Carey KD, Erdman DD, Leland MM, Patterson JL. A novel adenovirus species associated with an acute respiratory outbreak in a baboon colony and evidence of coincident human infection. Mbio. 4: e00084. PMID 23592261 DOI: 10.1128/mBio.00084-13  0.32
2012 Yu G, Greninger AL, Isa P, Phan TG, Martínez MA, de la Luz Sanchez M, Contreras JF, Santos-Preciado JI, Parsonnet J, Miller S, DeRisi JL, Delwart E, Arias CF, Chiu CY. Discovery of a novel polyomavirus in acute diarrheal samples from children. Plos One. 7: e49449. PMID 23166671 DOI: 10.1371/Journal.Pone.0049449  0.32
2011 Chen EC, Yagi S, Kelly KR, Mendoza SP, Tarara RP, Canfield DR, Maninger N, Rosenthal A, Spinner A, Bales KL, Schnurr DP, Lerche NW, Chiu CY. Cross-species transmission of a novel adenovirus associated with a fulminant pneumonia outbreak in a new world monkey colony. Plos Pathogens. 7: e1002155. PMID 21779173 DOI: 10.1371/Journal.Ppat.1002155  0.32
2010 Greninger AL, Chen EC, Sittler T, Scheinerman A, Roubinian N, Yu G, Kim E, Pillai DR, Guyard C, Mazzulli T, Isa P, Arias CF, Hackett J, Schochetman G, Miller S, ... ... Chiu CY, et al. A metagenomic analysis of pandemic influenza A (2009 H1N1) infection in patients from North America. Plos One. 5: e13381. PMID 20976137 DOI: 10.1371/Journal.Pone.0013381  0.32
2008 Chiu CY, Greninger AL, Kanada K, Kwok T, Fischer KF, Runckel C, Louie JK, Glaser CA, Yagi S, Schnurr DP, Haggerty TD, Parsonnet J, Ganem D, DeRisi JL. Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections. Proceedings of the National Academy of Sciences of the United States of America. 105: 14124-9. PMID 18768820 DOI: 10.1073/Pnas.0805968105  0.32
2008 Chiu CY, Urisman A, Greenhow TL, Rouskin S, Yagi S, Schnurr D, Wright C, Drew WL, Wang D, Weintrub PS, Derisi JL, Ganem D. Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children. The Journal of Pediatrics. 153: 76-83. PMID 18571541 DOI: 10.1016/J.Jpeds.2007.12.035  0.32
2007 Chiu CY, Alizadeh AA, Rouskin S, Merker JD, Yeh E, Yagi S, Schnurr D, Patterson BK, Ganem D, DeRisi JL. Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray. Journal of Clinical Microbiology. 45: 2340-3. PMID 17494722 DOI: 10.1128/Jcm.00364-07  0.32
2006 Chiu CY, Rouskin S, Koshy A, Urisman A, Fischer K, Yagi S, Schnurr D, Eckburg PB, Tompkins LS, Blackburn BG, Merker JD, Patterson BK, Ganem D, DeRisi JL. Microarray detection of human parainfluenzavirus 4 infection associated with respiratory failure in an immunocompetent adult. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 43: e71-6. PMID 16983602 DOI: 10.1086/507896  0.32
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