Richard H. Scheuermann - Publications

Affiliations: 
J. Craig Venter Institute, San Diego, CA, United States 
Website:
https://www.jcvi.org/about/richard-scheuermann

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Year Citation  Score
2016 Toby IT, Levin MK, Salinas EA, Christley S, Bhattacharya S, Breden F, Buntzman A, Corrie B, Fonner J, Gupta NT, Hershberg U, Marthandan N, Rosenfeld A, Rounds W, Rubelt F, ... ... Scheuermann RH, et al. VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. Bmc Bioinformatics. 17: 333. PMID 27766961 DOI: 10.1186/S12859-016-1214-3  1
2016 Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, ... ... Scheuermann RH, et al. The Ontology for Biomedical Investigations. Plos One. 11: e0154556. PMID 27128319 DOI: 10.1371/Journal.Pone.0154556  1
2016 Finak G, Langweiler M, Jaimes M, Malek M, Taghiyar J, Korin Y, Raddassi K, Devine L, Obermoser G, Pekalski ML, Pontikos N, Diaz A, Heck S, Villanova F, Terrazzini N, ... ... Scheuermann RH, et al. Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium. Scientific Reports. 6: 20686. PMID 26861911 DOI: 10.1038/Srep20686  1
2016 Brinkman RR, Aghaeepour N, Finak G, Gottardo R, Mosmann T, Scheuermann RH. Automated analysis of flow cytometry data comes of age. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 89: 13-5. PMID 26812230 DOI: 10.1002/Cyto.A.22810  1
2015 Aghaeepour N, Chattopadhyay P, Chikina M, Dhaene T, Van Gassen S, Kursa M, Lambrecht BN, Malek M, Qian Y, Qiu P, Saeys Y, Stanton R, Tong D, Vens C, Walkowiak S, ... ... Scheuermann RH, et al. A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. PMID 26447924 DOI: 10.1002/Cyto.A.22732  1
2015 Brinkman RR, Aghaeepour N, Finak G, Gottardo R, Mosmann T, Scheuermann RH. State-of-the-Art in the Computational Analysis of Cytometry Data. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 87: 591-3. PMID 26111230 DOI: 10.1002/Cyto.A.22707  1
2015 Kvistborg P, Gouttefangeas C, Aghaeepour N, Cazaly A, Chattopadhyay PK, Chan C, Eckl J, Finak G, Hadrup SR, Maecker HT, Maurer D, Mosmann T, Qiu P, Scheuermann RH, Welters MJ, et al. Thinking outside the gate: single-cell assessments in multiple dimensions. Immunity. 42: 591-2. PMID 25902473 DOI: 10.1016/J.Immuni.2015.04.006  1
2015 Miller MA, Schwartz T, Pickett BE, He S, Klem EB, Scheuermann RH, Passarotti M, Kaufman S, O'Leary MA. A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway. Evolutionary Bioinformatics Online. 11: 43-8. PMID 25861210 DOI: 10.4137/Ebo.S21501  1
2015 Lee AJ, Das SR, Wang W, Fitzgerald T, Pickett BE, Aevermann BD, Topham DJ, Falsey AR, Scheuermann RH. Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans. Journal of Virology. 89: 5427-40. PMID 25741011 DOI: 10.1128/Jvi.03636-14  1
2015 Courtot M, Meskas J, Diehl AD, Droumeva R, Gottardo R, Jalali A, Taghiyar MJ, Maecker HT, McCoy JP, Ruttenberg A, Scheuermann RH, Brinkman RR. flowCL: ontology-based cell population labelling in flow cytometry. Bioinformatics (Oxford, England). 31: 1337-9. PMID 25481008 DOI: 10.1093/Bioinformatics/Btu807  1
2014 Aevermann BD, Pickett BE, Kumar S, Klem EB, Agnihothram S, Askovich PS, Bankhead A, Bolles M, Carter V, Chang J, Clauss TR, Dash P, Diercks AH, Eisfeld AJ, Ellis A, ... ... Scheuermann RH, et al. A comprehensive collection of systems biology data characterizing the host response to viral infection. Scientific Data. 1: 140033. PMID 25977790 DOI: 10.1038/Sdata.2014.33  1
2014 Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, ... ... Scheuermann RH, et al. Standardized metadata for human pathogen/vector genomic sequences. Plos One. 9: e99979. PMID 24936976 DOI: 10.1371/Journal.Pone.0099979  1
2014 Gabriel VA, McClellan EA, Scheuermann RH. Response of human skin to esthetic scarification. Burns : Journal of the International Society For Burn Injuries. 40: 1338-44. PMID 24582755 DOI: 10.1016/J.Burns.2014.01.005  1
2013 Pickett BE, Liu M, Sadat EL, Squires RB, Noronha JM, He S, Jen W, Zaremba S, Gu Z, Zhou L, Larsen CN, Bosch I, Gehrke L, McGee M, Klem EB, ... Scheuermann RH, et al. Metadata-driven comparative analysis tool for sequences (meta-CATS): an automated process for identifying significant sequence variations that correlate with virus attributes. Virology. 447: 45-51. PMID 24210098 DOI: 10.1016/J.Virol.2013.08.021  1
2013 Spidlen J, Barsky A, Breuer K, Carr P, Nazaire MD, Hill BA, Qian Y, Liefeld T, Reich M, Mesirov JP, Wilkinson P, Scheuermann RH, Sekaly RP, Brinkman RR. GenePattern flow cytometry suite. Source Code For Biology and Medicine. 8: 14. PMID 23822732 DOI: 10.1186/1751-0473-8-14  1
2012 Qian Y, Liu Y, Campbell J, Thomson E, Kong YM, Scheuermann RH. FCSTrans: An open source software system for FCS file conversion and data transformation Cytometry Part A. 81: 353-356. PMID 22431383 DOI: 10.1002/Cyto.A.22037  1
2012 Noronha JM, Liu M, Squires RB, Pickett BE, Hale BG, Air GM, Galloway SE, Takimoto T, Schmolke M, Hunt V, Klem E, García-Sastre A, McGee M, Scheuermann RH. Influenza virus sequence feature variant type analysis: evidence of a role for NS1 in influenza virus host range restriction. Journal of Virology. 86: 5857-66. PMID 22398283 DOI: 10.1128/Jvi.06901-11  1
2011 Huang J, Mirel D, Pugh E, Xing C, Robinson PN, Pertsemlidis A, Ding L, Kozlitina J, Maher J, Rios J, Story M, Marthandan N, Scheuermann RH. Minimum Information about a Genotyping Experiment (MIGEN). Standards in Genomic Sciences. 5: 224-9. PMID 22180825 DOI: 10.4056/Sigs.1994602  1
2011 Diehl AD, Augustine AD, Blake JA, Cowell LG, Gold ES, Gondré-Lewis TA, Masci AM, Meehan TF, Morel PA, Nijnik A, Peters B, Pulendran B, Scheuermann RH, Yao QA, Zand MS, et al. Hematopoietic cell types: prototype for a revised cell ontology. Journal of Biomedical Informatics. 44: 75-9. PMID 20123131 DOI: 10.1016/J.Jbi.2010.01.006  1
2011 Rocca-Serra P, Ruttenberg A, O'Connor MJ, Whetzel PL, Schober D, Greenbaum J, Courtot M, Brinkman RR, Sansone SA, Scheuermann R, Peters B. Overcoming the ontology enrichment bottleneck with Quick Term Templates Applied Ontology. 6: 13-22. DOI: 10.3233/Ao-2011-0086  1
2010 Brister JR, Bao Y, Kuiken C, Lefkowitz EJ, Le Mercier P, Leplae R, Madupu R, Scheuermann RH, Schobel S, Seto D, Shrivastava S, Sterk P, Zeng Q, Klimke W, Tatusova T. Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop. Viruses. 2: 2258-68. PMID 21994619 DOI: 10.3390/V2102258  1
2010 Chen Z, McGee M, Liu Q, Kong YM, Huang X, Yang JY, Scheuermann RH. Identifying Differentially Expressed Genes based on probe level data for GeneChip arrays. International Journal of Computational Biology and Drug Design. 3: 237-57. PMID 21228458 DOI: 10.1504/Ijcbdd.2010.038028  1
2010 Qian Y, Wei C, Eun-Hyung Lee F, Campbell J, Halliley J, Lee JA, Cai J, Kong YM, Sadat E, Thomson E, Dunn P, Seegmiller AC, Karandikar NJ, Tipton CM, Mosmann T, ... ... Scheuermann RH, et al. Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data. Cytometry. Part B, Clinical Cytometry. 78: S69-82. PMID 20839340 DOI: 10.1002/Cyto.B.20554  1
2010 Chang RL, Luo F, Johnson S, Scheuermann RH. Deterministic graph-theoretic algorithm for detecting modules in biological interaction networks. International Journal of Bioinformatics Research and Applications. 6: 101-19. PMID 20223734 DOI: 10.1504/Ijbra.2010.032115  1
2010 Zhang S, Cao J, Kong YM, Scheuermann RH. GO-Bayes: Gene ontology-based overrepresentation analysis using a Bayesian approach Bioinformatics. 26: 905-911. PMID 20176581 DOI: 10.1093/Bioinformatics/Btq059  1
2010 Malin B, Karp D, Scheuermann RH. Technical and policy approaches to balancing patient privacy and data sharing in clinical and translational research. Journal of Investigative Medicine : the Official Publication of the American Federation For Clinical Research. 58: 11-8. PMID 20051768 DOI: 10.2310/Jim.0B013E3181C9B2Ea  1
2010 Karp DR, Marthandan N, Marsh SG, Ahn C, Arnett FC, Deluca DS, Diehl AD, Dunivin R, Eilbeck K, Feolo M, Guidry PA, Helmberg W, Lewis S, Mayes MD, Mungall C, ... ... Scheuermann RH, et al. Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis. Human Molecular Genetics. 19: 707-19. PMID 19933168 DOI: 10.1093/Hmg/Ddp521  1
2010 Thomson G, Marthandan N, Hollenbach JA, Mack SJ, Erlich HA, Single RM, Waller MJ, Marsh SG, Guidry PA, Karp DR, Scheuermann RH, Thompson SD, Glass DN, Helmberg W. Sequence feature variant type (SFVT) analysis of the HLA genetic association in juvenile idiopathic arthritis. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 359-70. PMID 19908388  1
2009 Carini S, Pollock BH, Lehmann HP, Bakken S, Barbour EM, Gabriel D, Hagler HK, Harper CR, Mollah SA, Nahm M, Nguyen HH, Scheuermann RH, Sim I. Development and evaluation of a study design typology for human research. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2009: 81-5. PMID 20351827  1
2009 Greenbaum JA, Kotturi MF, Kim Y, Oseroff C, Vaughan K, Salimi N, Vita R, Ponomarenko J, Scheuermann RH, Sette A, Peters B. Pre-existing immunity against swine-origin H1N1 influenza viruses in the general human population. Proceedings of the National Academy of Sciences of the United States of America. 106: 20365-70. PMID 19918065 DOI: 10.1073/Pnas.0911580106  1
2009 Barabote RD, Xie G, Brettin TS, Hinrichs SH, Fey PD, Jay JJ, Engle JL, Godbole SD, Noronha JM, Scheuermann RH, Zhou LW, Lion C, Dempsey MP. Complete genome sequence of Francisella tularensis subspecies holarctica FTNF002-00. Plos One. 4: e7041. PMID 19756146 DOI: 10.1371/Journal.Pone.0007041  1
2009 Bernstam EV, Hersh WR, Johnson SB, Chute CG, Nguyen H, Sim I, Nahm M, Weiner MG, Miller P, DiLaura RP, Overcash M, Lehmann HP, Eichmann D, Athey BD, Scheuermann RH, et al. Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs. Academic Medicine : Journal of the Association of American Medical Colleges. 84: 964-70. PMID 19550198 DOI: 10.1097/Acm.0B013E3181A8144D  1
2009 Qian Y, Tchuvatkina O, Spidlen J, Wilkinson P, Gasparetto M, Jones AR, Manion FJ, Scheuermann RH, Sekaly RP, Brinkman RR. FuGEFlow: data model and markup language for flow cytometry. Bmc Bioinformatics. 10: 184. PMID 19531228 DOI: 10.1186/1471-2105-10-184  1
2009 Masci AM, Arighi CN, Diehl AD, Lieberman AE, Mungall C, Scheuermann RH, Smith B, Cowell LG. An improved ontological representation of dendritic cells as a paradigm for all cell types. Bmc Bioinformatics. 10: 70. PMID 19243617 DOI: 10.1186/1471-2105-10-70  1
2009 Sim I, Chute CG, Lehmann H, Nagarajan R, Nahm M, Scheuermann RH. Keeping raw data in context. Science (New York, N.Y.). 323: 713. PMID 19197039 DOI: 10.1126/Science.323.5915.713A  1
2008 Lee JA, Spidlen J, Boyce K, Cai J, Crosbie N, Dalphin M, Furlong J, Gasparetto M, Goldberg M, Goralczyk EM, Hyun B, Jansen K, Kollmann T, Kong M, Leif R, ... ... Scheuermann RH, et al. MIFlowCyt: the minimum information about a Flow Cytometry Experiment. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 73: 926-30. PMID 18752282 DOI: 10.1002/Cyto.A.20623  1
2008 Taylor CF, Field D, Sansone SA, Aerts J, Apweiler R, Ashburner M, Ball CA, Binz PA, Bogue M, Booth T, Brazma A, Brinkman RR, Michael Clark A, Deutsch EW, Fiehn O, ... ... Scheuermann RH, et al. Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nature Biotechnology. 26: 889-96. PMID 18688244 DOI: 10.1038/Nbt.1411  1
2008 Grindinger T, Luo F, Wan XF, Scheuermann RH. Exploring core/periphery structures in protein interaction networks provides structure-property relation insights Proceedings - Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2008. 179-186. DOI: 10.1109/BIBM.2008.9  1
2007 Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, ... Scheuermann RH, et al. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nature Biotechnology. 25: 1251-5. PMID 17989687 DOI: 10.1038/Nbt1346  1
2007 Beckstrom-Sternberg SM, Auerbach RK, Godbole S, Pearson JV, Beckstrom-Sternberg JS, Deng Z, Munk C, Kubota K, Zhou Y, Bruce D, Noronha J, Scheuermann RH, Wang A, Wei X, Wang J, et al. Complete genomic characterization of a pathogenic A.II strain of Francisella tularensis subspecies tularensis. Plos One. 2: e947. PMID 17895988 DOI: 10.1371/Journal.Pone.0000947  1
2007 Greene JM, Collins F, Lefkowitz EJ, Roos D, Scheuermann RH, Sobral B, Stevens R, White O, Di Francesco V. National Institute of Allergy and Infectious Diseases bioinformatics resource centers: new assets for pathogen informatics. Infection and Immunity. 75: 3212-9. PMID 17420237 DOI: 10.1128/Iai.00105-07  1
2007 Diehl AD, Lee JA, Scheuermann RH, Blake JA. Ontology development for biological systems: immunology. Bioinformatics (Oxford, England). 23: 913-5. PMID 17267433 DOI: 10.1093/Bioinformatics/Btm029  1
2006 Marches R, Scheuermann R, Uhr J. Cancer dormancy: from mice to man. Cell Cycle (Georgetown, Tex.). 5: 1772-8. PMID 16929181 DOI: 10.4161/Cc.5.16.2995  1
2006 Lee JA, Sinkovits RS, Mock D, Rab EL, Cai J, Yang P, Saunders B, Hsueh RC, Choi S, Subramaniam S, Scheuermann RH. Components of the antigen processing and presentation pathway revealed by gene expression microarray analysis following B cell antigen receptor (BCR) stimulation. Bmc Bioinformatics. 7: 237. PMID 16670020 DOI: 10.1186/1471-2105-7-237  1
2004 Zhu X, Hart R, Chang MS, Kim JW, Lee SY, Cao YA, Mock D, Ke E, Saunders B, Alexander A, Grossoehme J, Lin KM, Yan Z, Hsueh R, Lee J, ... Scheuermann RH, et al. Analysis of the major patterns of B cell gene expression changes in response to short-term stimulation with 33 single ligands. Journal of Immunology (Baltimore, Md. : 1950). 173: 7141-9. PMID 15585835 DOI: 10.4049/Jimmunol.173.12.7141  1
2002 Gilman AG, Simon MI, Bourne HR, Harris BA, Long R, Ross EM, Stull JT, Taussig R, Bourne HR, Arkin AP, Cobb MH, Cyster JG, Devreotes PN, Ferrell JE, Fruman D, ... ... Scheuermann RH, et al. Overview of the Alliance for Cellular Signaling. Nature. 420: 703-6. PMID 12478301 DOI: 10.1038/Nature01304  1
2002 Hsueh RC, Hammill AM, Lee JA, Uhr JW, Scheuermann RH. Activation of the Syk tyrosine kinase is insufficient for downstream signal transduction in B lymphocytes. Bmc Immunology. 3: 16. PMID 12470302 DOI: 10.1186/1471-2172-3-16  1
2002 Boudreau F, Rings EH, Swain GP, Sinclair AM, Suh ER, Silberg DG, Scheuermann RH, Traber PG. A novel colonic repressor element regulates intestinal gene expression by interacting with Cux/CDP. Molecular and Cellular Biology. 22: 5467-78. PMID 12101240 DOI: 10.1128/Mcb.22.15.5467-5478.2002  1
2001 Sinclair AM, Lee JA, Goldstein A, Xing D, Liu S, Ju R, Tucker PW, Neufeld EJ, Scheuermann RH. Lymphoid apoptosis and myeloid hyperplasia in CCAAT displacement protein mutant mice. Blood. 98: 3658-67. PMID 11739170 DOI: 10.1182/Blood.V98.13.3658  1
2001 Roush KS, Domiati-Saad RK, Margraf LR, Krisher K, Scheuermann RH, Rogers BB, Dawson DB. Prevalence and cellular reservoir of latent human herpesvirus 6 in tonsillar lymphoid tissue American Journal of Clinical Pathology. 116: 648-654. PMID 11710680 DOI: 10.1309/Y2Hh-B1Ck-0F5L-U7B8  1
2001 Manabe N, Kawaguchi H, Chikuda H, Miyaura C, Inada M, Nagai R, Nabeshima YI, Nakamura K, Sinclair AM, Scheuermann RH, Kuro-o M. Connection between B lymphocyte and osteoclast differentiation pathways Journal of Immunology. 167: 2625-2631. PMID 11509604 DOI: 10.4049/Jimmunol.167.5.2625  1
2001 Kaplan MH, Zong RT, Herrscher RF, Scheuermann RH, Tucker PW. Transcriptional activation by a matrix associating region-binding protein. Contextual requirements for the function of Bright Journal of Biological Chemistry. 276: 21325-21330. PMID 11294836 DOI: 10.1074/Jbc.M100836200  1
2000 Bai X, Rogers BB, Harkins PC, Sommerauer J, Squires R, Rotondo K, Quan A, Dawson DB, Scheuermann RH. Predictive value of quantitative PCR-based viral burden analysis for eight human herpesviruses in pediatric solid organ transplant patients Journal of Molecular Diagnostics. 2: 191-201. PMID 11232109 DOI: 10.1016/S1525-1578(10)60637-X  1
1999 Hammill AK, Uhr JW, Scheuermann RH. Annexin V staining due to loss of membrane asymmetry can be reversible and precede commitment to apoptotic death. Experimental Cell Research. 251: 16-21. PMID 10438567 DOI: 10.1006/Excr.1999.4581  1
1999 Hsueh RC, Hammill AK, Marches R, Uhr JW, Scheuermann RH. Antigen receptor signaling induces differential tyrosine kinase activation and population stability in B-cell lymphoma. Current Topics in Microbiology and Immunology. 246: 299-304; discussion . PMID 10396069 DOI: 10.1007/978-3-642-60162-0_37  1
1999 Wang Z, Goldstein A, Zong RT, Danjun L, Neufeld EJ, Scheuermann RH, Tucker PW. Cux/CDP homeoprotein is a component of NF-μNR and represses the immunoglobulin heavy chain intronic enhancer by antagonizing the bright transcription activator Molecular and Cellular Biology. 19: 284-295. PMID 9858552 DOI: 10.1128/Mcb.19.1.284  1
1998 Rogers BB, Sommerauer J, Quan A, Timmons CF, Dawson DB, Scheuermann RH, Krisher K, Atkins C. Epstein-Barr virus polymerase chain reaction and serology in pediatric post-transplant lymphoproliferative disorder: Three-year experience Pediatric and Developmental Pathology. 1: 480-486. PMID 9724334 DOI: 10.1007/S100249900066  1
1997 Vitetta ES, Tucker TF, Racila E, Huang YW, Marches R, Lane N, Scheuermann RH, Street NE, Watanabe T, Uhr JW. Tumor dormancy and cell signaling. V. Regrowth of the BCL1 tumor after dormancy is established. Blood. 89: 4425-36. PMID 9192767 DOI: 10.1182/Blood.V89.12.4425  1
1997 Uhr JW, Scheuermann RH, Street NE, Vitetta ES. Cancer dormancy: opportunities for new therapeutic approaches. Nature Medicine. 3: 505-9. PMID 9142117 DOI: 10.1038/Nm0597-505  1
1996 Uhr JW, Marches R, Racila E, Tucker TF, Hsueh R, Street NE, Vitetta ES, Scheuermann RH. Role of antibody signaling in inducing tumor dormancy. Advances in Experimental Medicine and Biology. 406: 69-74. PMID 8910672 DOI: 10.1007/978-1-4899-0274-0_7  1
1996 Racila E, Hsueh R, Marches R, Tucker TF, Krammer PH, Scheuermann RH, Uhr JW. Tumor dormancy and cell signaling: anti-mu-induced apoptosis in human B-lymphoma cells is not caused by an APO-1-APO-1 ligand interaction. Proceedings of the National Academy of Sciences of the United States of America. 93: 2165-8. PMID 8700902 DOI: 10.1073/Pnas.93.5.2165  1
1995 Herrscher RF, Kaplan MH, Lelsz DL, Das C, Scheuermann R, Tucker PW. The immunoglobulin heavy-chain matrix-associating regions are bound by Bright: A B cell-specific trans-activator that describes a new DNA-binding protein family Genes and Development. 9: 3067-3082. PMID 8543152 DOI: 10.1101/Gad.9.24.3067  1
1995 Scheuermann RH, Racila E, Uhr JW. Lyn tyrosine kinase signals cell cycle arrest in mouse and human B-cell lymphoma. Current Topics in Microbiology and Immunology. 194: 313-21. PMID 7895504 DOI: 10.1007/978-3-642-79275-5_36  1
1995 Scheuermann RH, Uhr JW. Connections between signal transduction components and cellular responses initiated by antigen receptor on B lymphocytes. The Journal of Experimental Medicine. 182: 903-6. PMID 7561692 DOI: 10.1084/Jem.182.4.903  1
1995 Racila E, Scheuermann RH, Picker LJ, Yefenof E, Tucker T, Chang W, Marches R, Street NE, Vitetta ES, Uhr JW. Tumor dormancy and cell signaling. II. Antibody as an agonist in inducing dormancy of a B cell lymphoma in SCID mice. The Journal of Experimental Medicine. 181: 1539-50. PMID 7535341 DOI: 10.1084/Jem.181.4.1539  1
1994 Scheuermann RH, Racila E, Tucker T, Yefenof E, Street NE, Vitetta ES, Picker LJ, Uhr JW. Lyn tyrosine kinase signals cell cycle arrest but not apoptosis in B-lineage lymphoma cells. Proceedings of the National Academy of Sciences of the United States of America. 91: 4048-52. PMID 7513431 DOI: 10.1073/Pnas.91.9.4048  1
1993 Yefenof E, Picker LJ, Scheuermann RH, Tucker TF, Vitetta ES, Uhr JW. Cancer dormancy: isolation and characterization of dormant lymphoma cells. Proceedings of the National Academy of Sciences of the United States of America. 90: 1829-33. PMID 8446596 DOI: 10.1073/Pnas.90.5.1829  1
1993 Yefenof E, Picker LJ, Scheuermann RH, Vitetta ES, Street NE, Tucker TF, Uhr JW. Induction of B cell tumor dormancy by anti-idiotypic antibodies. Current Opinion in Immunology. 5: 740-4. PMID 8240736 DOI: 10.1016/0952-7915(93)90130-K  1
1988 Burckhardt SE, Woodgate R, Scheuermann RH, Echols H. UmuD mutagenesis protein of Escherichia coli: overproduction, purification, and cleavage by RecA. Proceedings of the National Academy of Sciences of the United States of America. 85: 1811-5. PMID 3279417 DOI: 10.1073/Pnas.85.6.1811  1
1986 Lu C, Scheuermann RH, Echols H. Capacity of RecA protein to bind preferentially to UV lesions and inhibit the editing subunit (epsilon) of DNA polymerase III: a possible mechanism for SOS-induced targeted mutagenesis. Proceedings of the National Academy of Sciences of the United States of America. 83: 619-23. PMID 3456159 DOI: 10.1073/Pnas.83.3.619  1
1984 Scheuermann RH, Echols H. A separate editing exonuclease for DNA replication: the epsilon subunit of Escherichia coli DNA polymerase III holoenzyme. Proceedings of the National Academy of Sciences of the United States of America. 81: 7747-51. PMID 6393125 DOI: 10.1073/Pnas.81.24.7747  1
1983 Scheuermann R, Tam S, Burgers PMJ. Identification of the ε-subunit of Escherichia coli DNA polymerase III holoenzyme as the dnaQ gene product: A fidelity subunit for DNA replication Proceedings of the National Academy of Sciences of the United States of America. 80: 7085-7089. PMID 6359162 DOI: 10.1073/Pnas.80.23.7085  1
Low-probability matches
2018 Brown DM, Hixon AM, Oldfield LM, Zhang Y, Novotny M, Wang W, Das SR, Shabman RS, Tyler KL, Scheuermann RH. Contemporary Circulating Enterovirus D68 Strains Have Acquired the Capacity for Viral Entry and Replication in Human Neuronal Cells. Mbio. 9. PMID 30327438 DOI: 10.1128/Mbio.01954-18  0.16
2019 Zmasek CM, Knipe DM, Pellett PE, Scheuermann RH. Classification of human Herpesviridae proteins using Domain-architecture Aware Inference of Orthologs (DAIO). Virology. 529: 29-42. PMID 30660046 DOI: 10.1016/J.Virol.2019.01.005  0.04
2021 Huang N, Pérez P, Kato T, Mikami Y, Okuda K, Gilmore RC, Conde CD, Gasmi B, Stein S, Beach M, Pelayo E, Maldonado JO, Lafont BA, Jang SI, Nasir N, ... ... Scheuermann RH, et al. SARS-CoV-2 infection of the oral cavity and saliva. Nature Medicine. PMID 33767405 DOI: 10.1038/s41591-021-01296-8  0.01
2021 Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Armañanzas R, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, ... ... Scheuermann RH, et al. Author Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types. Nature Neuroscience. PMID 33742182 DOI: 10.1038/s41593-020-00779-0  0.01
2021 da Silva Antunes R, Soldevila F, Pomaznoy M, Babor M, Bennett J, Tian Y, Khalil NN, Qian Y, Mandava A, Scheuermann RH, Cortese M, Pulendran B, Petro CD, Gilkes AP, Purcell LA, et al. Systems view of Bordetella pertussis booster vaccination in adults primed with whole-cell vs. acellular vaccine. Jci Insight. PMID 33690224 DOI: 10.1172/jci.insight.141023  0.01
2021 Tarke A, Sidney J, Methot N, Zhang Y, Dan JM, Goodwin B, Rubiro P, Sutherland A, da Silva Antunes R, Frazier A, Rawlings SA, Smith DM, Peters B, Scheuermann RH, Weiskopf D, et al. Negligible impact of SARS-CoV-2 variants on CD4 and CD8 T cell reactivity in COVID-19 exposed donors and vaccinees. Biorxiv : the Preprint Server For Biology. PMID 33688655 DOI: 10.1101/2021.02.27.433180  0.01
2020 Shannon CP, Blimkie TM, Ben-Othman R, Gladish N, Amenyogbe N, Drissler S, Edgar RD, Chan Q, Krajden M, Foster LJ, Kobor MS, Mohn WW, Brinkman RR, Le Cao KA, Scheuermann RH, et al. Multi-Omic Data Integration Allows Baseline Immune Signatures to Predict Hepatitis B Vaccine Response in a Small Cohort. Frontiers in Immunology. 11: 578801. PMID 33329547 DOI: 10.3389/fimmu.2020.578801  0.01
2020 Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Arnedillo RA, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, ... ... Scheuermann R, et al. Publisher Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types. Nature Neuroscience. PMID 33277642 DOI: 10.1038/s41593-020-00768-3  0.01
2020 Brown DM, Zhang Y, Scheuermann RH. Epidemiology and Sequence-Based Evolutionary Analysis of Circulating Non-Polio Enteroviruses. Microorganisms. 8. PMID 33255654 DOI: 10.3390/microorganisms8121856  0.01
2020 Ben-Othman R, Cai B, Liu AC, Varankovich N, He D, Blimkie TM, Lee AH, Gill EE, Novotny M, Aevermann B, Drissler S, Shannon CP, McCann S, Marty K, Bjornson G, ... ... Scheuermann RH, et al. Systems Biology Methods Applied to Blood and Tissue for a Comprehensive Analysis of Immune Response to Hepatitis B Vaccine in Adults. Frontiers in Immunology. 11: 580373. PMID 33250895 DOI: 10.3389/fimmu.2020.580373  0.01
2020 Zhang Y, Aevermann BD, Bakken TE, Miller JA, Hodge RD, Lein ES, Scheuermann RH. FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test. Briefings in Bioinformatics. PMID 33249453 DOI: 10.1093/bib/bbaa339  0.01
2020 Füllgrabe A, George N, Green M, Nejad P, Aronow B, Fexova SK, Fischer C, Freeberg MA, Huerta L, Morrison N, Scheuermann RH, Taylor D, Vasilevsky N, Clarke L, Gehlenborg N, et al. Guidelines for reporting single-cell RNA-seq experiments. Nature Biotechnology. PMID 33188371 DOI: 10.1038/s41587-020-00744-z  0.01
2020 Huang N, Perez P, Kato T, Mikami Y, Okuda K, Gilmore RC, Domínguez Conde C, Gasmi B, Stein S, Beach M, Pelayo E, Maldonado J, LaFont B, Padilla R, Murrah V, ... ... Scheuermann R, et al. Integrated Single-Cell Atlases Reveal an Oral SARS-CoV-2 Infection and Transmission Axis. Medrxiv : the Preprint Server For Health Sciences. PMID 33140061 DOI: 10.1101/2020.10.26.20219089  0.01
2020 Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Arnedillo RA, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, ... ... Scheuermann R, et al. A community-based transcriptomics classification and nomenclature of neocortical cell types. Nature Neuroscience. PMID 32839617 DOI: 10.1038/S41593-020-0685-8  0.01
2020 Grifoni A, Sidney J, Zhang Y, Scheuermann RH, Peters B, Sette A. Candidate Targets for Immune Responses to 2019-Novel Coronavirus (nCoV): Sequence Homology- and Bioinformatic-Based Predictions. Ssrn. 3541361. PMID 32714104 DOI: 10.2139/ssrn.3541361  0.01
2020 Thakar J, Qian Y, Benoodt L, Roumanes D, Qiu X, Laniewski N, Chu C, Slaunwhite C, Wang L, Mandava A, Chang I, Falsey AR, Caserta MT, Mariani TJ, Scheuermann RH, et al. Unbiased analysis of peripheral blood mononuclear cells reveals CD4 T cell response to RSV matrix protein. Vaccine: X. 5: 100065. PMID 32529184 DOI: 10.1016/j.jvacx.2020.100065  0.01
2020 Mavian C, Pond SK, Marini S, Magalis BR, Vandamme AM, Dellicour S, Scarpino SV, Houldcroft C, Villabona-Arenas J, Paisie TK, Trovão NS, Boucher C, Zhang Y, Scheuermann RH, Gascuel O, et al. Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable. Proceedings of the National Academy of Sciences of the United States of America. PMID 32381734 DOI: 10.1073/Pnas.2007295117  0.01
2020 Grifoni A, Sidney J, Zhang Y, Scheuermann RH, Peters B, Sette A. A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2. Cell Host & Microbe. PMID 32183941 DOI: 10.1016/J.Chom.2020.03.002  0.01
2020 Hodge RD, Miller JA, Novotny M, Kalmbach BE, Ting JT, Bakken TE, Aevermann BD, Barkan ER, Berkowitz-Cerasano ML, Cobbs C, Diez-Fuertes F, Ding SL, McCorrison J, Schork NJ, Shehata SI, ... ... Scheuermann RH, et al. Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons. Nature Communications. 11: 1172. PMID 32127543 DOI: 10.1016/J.Ibror.2019.07.894  0.01
2019 Ji D, Putzel P, Qian Y, Chang I, Mandava A, Scheuermann RH, Bui JD, Wang HY, Smyth P. Machine Learning of Discriminative Gate Locations for Clinical Diagnosis. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. PMID 31691488 DOI: 10.1002/Cyto.A.23906  0.01
2019 Grifoni A, Mahajan S, Sidney J, Martini S, Scheuermann RH, Peters B, Sette A. A survey of known immune epitopes in the enteroviruses strains associated with acute flaccid myelitis. Human Immunology. PMID 31451291 DOI: 10.1016/J.Humimm.2019.08.004  0.01
2019 Hodge RD, Bakken TE, Miller JA, Smith KA, Barkan ER, Graybuck LT, Close JL, Long B, Johansen N, Penn O, Yao Z, Eggermont J, Höllt T, Levi BP, Shehata SI, ... ... Scheuermann RH, et al. Conserved cell types with divergent features in human versus mouse cortex. Nature. PMID 31435019 DOI: 10.1038/S41586-019-1506-7  0.01
2019 Garimilla S, Nguyen DC, Halliley JL, Tipton C, Rosenberg AF, Fucile CF, Saney CL, Kyu S, Kaminski D, Qian Y, Scheuermann RH, Gibson G, Sanz I, Lee FE. Differential transcriptome and development of human peripheral plasma cell subsets. Jci Insight. 4. PMID 31045577 DOI: 10.1172/Jci.Insight.126732  0.01
2019 Zhang Y, Zmasek C, Sun G, Larsen CN, Scheuermann RH. Hepatitis C Virus Database and Bioinformatics Analysis Tools in the Virus Pathogen Resource (ViPR). Methods in Molecular Biology (Clifton, N.J.). 1911: 47-69. PMID 30593617 DOI: 10.1007/978-1-4939-8976-8_3  0.01
2019 Scheuermann RH. F-104 Emergence of novel EV-D68 lineages associated with acute flaccid paralysis Jaids Journal of Acquired Immune Deficiency Syndromes. 81: 43-43. DOI: 10.1097/01.QAI.0000557975.48172.90  0.01
2019 Miller J, Hodge R, Novotny M, Ting J, Kalmbach B, Bakken T, Aevermann B, Barkan E, Berkowitz-Cerasano M, Cobbs C, Diez-Fuertes F, Ding S, Mccorrison J, Schork N, Shehata S, ... ... Scheuermann R, et al. Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons Ibro Reports. 6: S289. DOI: 10.1016/j.ibror.2019.07.894  0.01
2018 Bakken TE, Hodge RD, Miller JA, Yao Z, Nguyen TN, Aevermann B, Barkan E, Bertagnolli D, Casper T, Dee N, Garren E, Goldy J, Graybuck LT, Kroll M, Lasken RS, ... ... Scheuermann RH, et al. Single-nucleus and single-cell transcriptomes compared in matched cortical cell types. Plos One. 13: e0209648. PMID 30586455 DOI: 10.1371/Journal.Pone.0209648  0.01
2018 Wang W, Huang H, Halagan M, Vierra-Green C, Heuer M, Brelsford JE, Haagenson M, Scheuermann RH, Telenti A, Biggs W, Pearson NM, Udell J, Spellman S, Maiers M, Kennedy CJ. Chromosome Y-encoded antigens associate with acute graft-versus-host disease in sex-mismatched stem cell transplant. Blood Advances. 2: 2419-2429. PMID 30262602 DOI: 10.1182/Bloodadvances.2018019513  0.01
2018 Boldog E, Bakken TE, Hodge RD, Novotny M, Aevermann BD, Baka J, Bordé S, Close JL, Diez-Fuertes F, Ding SL, Faragó N, Kocsis ÁK, Kovács B, Maltzer Z, McCorrison JM, ... ... Scheuermann RH, et al. Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type. Nature Neuroscience. PMID 30150662 DOI: 10.1038/S41593-018-0205-2  0.01
2018 Christley S, Scarborough W, Salinas E, Rounds WH, Toby IT, Fonner JM, Levin MK, Kim M, Mock SA, Jordan C, Ostmeyer J, Buntzman A, Rubelt F, Davila ML, Monson NL, ... Scheuermann RH, et al. VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements. Frontiers in Immunology. 9: 976. PMID 29867956 DOI: 10.3389/Fimmu.2018.00976  0.01
2018 Ibrahim B, Arkhipova K, Andeweg AC, Posada-Céspedes S, Enault F, Gruber A, Koonin EV, Kupczok A, Lemey P, McHardy AC, McMahon DP, Pickett BE, Robertson DL, Scheuermann RH, Zhernakova A, et al. Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting. Viruses. 10. PMID 29757994 DOI: 10.3390/V10050256  0.01
2018 Lee AJ, Chang I, Burel JG, Lindestam Arlehamn CS, Mandava A, Weiskopf D, Peters B, Sette A, Scheuermann RH, Qian Y. DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. PMID 29665244 DOI: 10.1002/Cyto.A.23371  0.01
2018 Aevermann BD, Novotny M, Bakken T, Miller JA, Diehl AD, Osumi-Sutherland D, Lasken RS, Lein ES, Scheuermann RH. Big data and single cell transcriptomics: implications for ontological representation. Human Molecular Genetics. PMID 29590361 DOI: 10.1093/Hmg/Ddy100  0.01
2017 Bakken T, Cowell L, Aevermann BD, Novotny M, Hodge R, Miller JA, Lee A, Chang I, McCorrison J, Pulendran B, Qian Y, Schork NJ, Lasken RS, Lein ES, Scheuermann RH. Cell type discovery and representation in the era of high-content single cell phenotyping. Bmc Bioinformatics. 18: 559. PMID 29322913 DOI: 10.1186/S12859-017-1977-1  0.01
2017 Scheuermann RH, Bui J, Wang HY, Qian Y. Automated Analysis of Clinical Flow Cytometry Data: A Chronic Lymphocytic Leukemia Illustration. Clinics in Laboratory Medicine. 37: 931-944. PMID 29128077 DOI: 10.1016/J.Cll.2017.07.011  0.01
2017 Christley S, Levin MK, Toby IT, Fonner JM, Monson NL, Rounds WH, Rubelt F, Scarborough W, Scheuermann RH, Cowell LG. VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data. Bmc Bioinformatics. 18: 448. PMID 29020925 DOI: 10.1186/S12859-017-1853-Z  0.01
2017 Pedersen NW, Chandran PA, Qian Y, Rebhahn J, Petersen NV, Hoff MD, White S, Lee AJ, Stanton R, Halgreen C, Jakobsen K, Mosmann T, Gouttefangeas C, Chan C, Scheuermann RH, et al. Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells. Frontiers in Immunology. 8: 858. PMID 28798746 DOI: 10.3389/Fimmu.2017.00858  0.01
2017 Xie C, Yeo ZX, Wong M, Piper J, Long T, Kirkness EF, Biggs WH, Bloom K, Spellman S, Vierra-Green C, Brady C, Scheuermann RH, Telenti A, Howard S, Brewerton S, et al. Fast and accurate HLA typing from short-read next-generation sequence data with xHLA. Proceedings of the National Academy of Sciences of the United States of America. PMID 28674023 DOI: 10.1073/Pnas.1707945114  0.01
2017 Lee AJ, Bhattacharya R, Scheuermann RH, Pickett BE. Identification of diagnostic peptide regions that distinguish Zika virus from related mosquito-borne Flaviviruses. Plos One. 12: e0178199. PMID 28562637 DOI: 10.1371/Journal.Pone.0178199  0.01
2017 Schulten V, Tripple V, Seumois G, Qian Y, Scheuermann RH, Fu Z, Locci M, Rosales S, Vijayanand P, Sette A, Alam R, Crotty S, Peters B. Allergen-specific immunotherapy modulates the balance of circulating Tfh and Tfr cells. The Journal of Allergy and Clinical Immunology. PMID 28506846 DOI: 10.1016/J.Jaci.2017.04.032  0.01
2017 Scheuermann RH, Sinkovits RS, Schenkelberg T, Koff WC. A bioinformatics roadmap for the human vaccines project. Expert Review of Vaccines. 16: 535-544. PMID 28434256 DOI: 10.1080/14760584.2017.1322752  0.01
2017 Sun G, Larsen CN, Baumgarth N, Klem EB, Scheuermann RH. Comprehensive Annotation of Mature Peptides and Genotypes for Zika Virus. Plos One. 12: e0170462. PMID 28125631 DOI: 10.1371/Journal.Pone.0170462  0.01
2017 Burel JG, Qian Y, Lindestam Arlehamn C, Weiskopf D, Zapardiel-Gonzalo J, Taplitz R, Gilman RH, Saito M, de Silva AD, Vijayanand P, Scheuermann RH, Sette A, Peters B. An Integrated Workflow To Assess Technical and Biological Variability of Cell Population Frequencies in Human Peripheral Blood by Flow Cytometry. Journal of Immunology (Baltimore, Md. : 1950). PMID 28069807 DOI: 10.4049/Jimmunol.1601750  0.01
2017 VINCENT A, ANDERSON T, MACKEN C, ZHANG Y, LEWIS N, SCHEUERMANN R. OFFLU swine influenza experts develop global nomenclature system and automated annotation tool for H1 haemagglutinin genes of influenza A viruses Revue Scientifique Et Technique De L'Oie. 2017: 106-113. DOI: 10.20506/bull.2017.2.2652  0.01
2016 Zhang Y, Cao J, Zhang S, Lee AJ, Sun G, Larsen CN, Zhao H, Gu Z, He S, Klem EB, Scheuermann RH. Genetic changes found in a distinct clade of Enterovirus D68 associated with paralysis during the 2014 outbreak. Virus Evolution. 2: vew015. PMID 28512577 DOI: 10.1093/Ve/Vew015  0.01
2016 Anderson TK, Macken CA, Lewis NS, Scheuermann RH, Van Reeth K, Brown IH, Swenson SL, Simon G, Saito T, Berhane Y, Ciacci-Zanella J, Pereda A, Davis CT, Donis RO, Webby RJ, et al. A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses. Msphere. 1. PMID 27981236 DOI: 10.1128/mSphere.00275-16  0.01
2016 Aevermann B, McCorrison J, Venepally P, Hodge R, Bakken T, Miller J, Novotny M, Tran DN, Diezfuertes F, Christiansen L, Zhang F, Steemers F, Lasken RS, Lein ED, Schork N, ... Scheuermann RH, et al. PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 22: 564-575. PMID 27897007  0.01
2016 Zhang Y, Aevermann BD, Anderson TK, Burke DF, Dauphin G, Gu Z, He S, Kumar S, Larsen CN, Lee AJ, Li X, Macken C, Mahaffey C, Pickett BE, Reardon B, ... ... Scheuermann RH, et al. Influenza Research Database: An integrated bioinformatics resource for influenza virus research. Nucleic Acids Research. PMID 27679478 DOI: 10.1093/Nar/Gkw857  0.01
2016 Scheuermann RH. Zika virus: designate standardized names. Nature. 531: 173. PMID 26961650 DOI: 10.1038/531173A  0.01
2016 Krishnaswami SR, Grindberg RV, Novotny M, Venepally P, Lacar B, Bhutani K, Linker SB, Pham S, Erwin JA, Miller JA, Hodge R, McCarthy JK, Kelder M, McCorrison J, Aevermann BD, ... ... Scheuermann RH, et al. Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons. Nature Protocols. 11: 499-524. PMID 26890679 DOI: 10.1038/Nprot.2016.015  0.01
2016 Zepeda-Orozco D, Kong M, Scheuermann RH. Molecular Profile of Mitochondrial Dysfunction in Kidney Transplant Biopsies Is Associated With Poor Allograft Outcome. Transplantation Proceedings. 47: 1675-82. PMID 26293032 DOI: 10.1016/j.transproceed.2015.04.086  0.01
2015 Hsiao C, Liu M, Stanton R, McGee M, Qian Y, Scheuermann RH. Mapping cell populations in flow cytometry data for cross-sample comparison using the Friedman-Rafsky test statistic as a distance measure. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. PMID 26274018 DOI: 10.1002/Cyto.A.22735  0.01
2014 Squires RB, Pickett BE, Das S, Scheuermann RH. Toward a method for tracking virus evolutionary trajectory applied to the pandemic H1N1 2009 influenza virus. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 28: 351-7. PMID 25064525 DOI: 10.1016/J.Meegid.2014.07.015  0.01
2013 Rink B, Roberts K, Harabagiu S, Scheuermann RH, Toomay S, Browning T, Bosler T, Peshock R. Extracting actionable findings of appendicitis from radiology reports using natural language processing. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2013: 221. PMID 24303268  0.01
2013 Aghaeepour N, Finak G, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH. Critical assessment of automated flow cytometry data analysis techniques. Nature Methods. 10: 228-38. PMID 23396282 DOI: 10.1038/Nmeth.2365  0.01
2013 Aghaeepour N, Finak G, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH. Correction: Corrigendum: Critical assessment of automated flow cytometry data analysis techniques Nature Methods. 10: 445-445. DOI: 10.1038/Nmeth0513-445E  0.01
2013 Aghaeepour N, Finak G, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH. Erratum: Critical assessment of automated flow cytometry data analysis techniques Nature Methods. 10: 445-445. DOI: 10.1038/Nmeth0513-445C  0.01
2012 Roberts K, Rink B, Harabagiu SM, Scheuermann RH, Toomay S, Browning T, Bosler T, Peshock R. A machine learning approach for identifying anatomical locations of actionable findings in radiology reports. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2012: 779-88. PMID 23304352  0.01
2012 Pickett BE, Greer DS, Zhang Y, Stewart L, Zhou L, Sun G, Gu Z, Kumar S, Zaremba S, Larsen CN, Jen W, Klem EB, Scheuermann RH. Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community. Viruses. 4: 3209-26. PMID 23202522 DOI: 10.3390/V4113209  0.01
2012 Squires RB, Noronha J, Hunt V, García-Sastre A, Macken C, Baumgarth N, Suarez D, Pickett BE, Zhang Y, Larsen CN, Ramsey A, Zhou L, Zaremba S, Kumar S, Deitrich J, ... ... Scheuermann RH, et al. Influenza research database: an integrated bioinformatics resource for influenza research and surveillance. Influenza and Other Respiratory Viruses. 6: 404-16. PMID 22260278 DOI: 10.1111/J.1750-2659.2011.00331.X  0.01
2012 Pickett BE, Sadat EL, Zhang Y, Noronha JM, Squires RB, Hunt V, Liu M, Kumar S, Zaremba S, Gu Z, Zhou L, Larson CN, Dietrich J, Klem EB, Scheuermann RH. ViPR: an open bioinformatics database and analysis resource for virology research. Nucleic Acids Research. 40: D593-8. PMID 22006842 DOI: 10.1093/Nar/Gkr859  0.01
2012 Scheuermann RH, Bai X. Diagnostic applications of quantitative polymerase chain reaction for cytomegalovirus. Methods in Molecular Medicine. 49: 337-51. PMID 21370152 DOI: 10.1385/1-59259-081-0:337  0.01
2011 Chen Z, Liu Q, McGee M, Kong M, Huang X, Deng Y, Scheuermann RH. A gene selection method for GeneChip array data with small sample sizes. Bmc Genomics. 12: S7. PMID 22369149 DOI: 10.1186/1471-2164-12-S5-S7  0.01
2011 Smith B, Scheuermann RH. Ontologies for clinical and translational research: Introduction. Journal of Biomedical Informatics. 44: 3-7. PMID 21241822 DOI: 10.1016/J.Jbi.2011.01.002  0.01
2011 Kong YM, Dahlke C, Xiang Q, Qian Y, Karp D, Scheuermann RH. Toward an ontology-based framework for clinical research databases. Journal of Biomedical Informatics. 44: 48-58. PMID 20460173 DOI: 10.1016/J.Jbi.2010.05.001  0.01
2011 Bais DS. Health risks of pneumonia and mortality rate in children: A south asian perspective Journal of Antivirals & Antiretrovirals. 2. DOI: 10.4172/1948-5964.S1.16  0.01
2011 Mack SJ, Guidry PA, Marthandan N, Smith T, Campbell J, Dunn P, Karp DR, Single RM, Thomson G, Wiser J, Scheuermann RH, Erlich HA. The Immport Ambiguity Resolution Tool: A Frequency-Based Approach To Resolving Allelic And Genotypic Ambiguity In Hla Genotype Data Human Immunology. 72. DOI: 10.1016/J.Humimm.2011.07.225  0.01
2010 Sim I, Carini S, Tu S, Wynden R, Pollock BH, Mollah SA, Gabriel D, Hagler HK, Scheuermann RH, Lehmann HP, Wittkowski KM, Nahm M, Bakken S. The human studies database project: federating human studies design data using the ontology of clinical research. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2010: 51-5. PMID 21347149  0.01
2010 Scheuermann RH, Milgrom H. Personalized care, comparative effectiveness research and the electronic health record. Current Opinion in Allergy and Clinical Immunology. 10: 168-70. PMID 20431366 DOI: 10.1097/Aci.0B013E328338C232  0.01
2009 Scheuermann RH, Ceusters W, Smith B. Toward an ontological treatment of disease and diagnosis. Summit On Translational Bioinformatics. 2009: 116-20. PMID 21347182  0.01
2009 Chen Z, McGee M, Liu Q, Kong M, Deng Y, Scheuermann RH. A Distribution-Free Convolution Model for background correction of oligonucleotide microarray data. Bmc Genomics. 10: S19. PMID 19594878 DOI: 10.1186/1471-2164-10-S1-S19  0.01
2009 Luo F, Li B, Wan XF, Scheuermann RH. Core and periphery structures in protein interaction networks. Bmc Bioinformatics. 10: S8. PMID 19426456 DOI: 10.1186/1471-2105-10-S4-S8  0.01
2009 Thomson G, Karp DR, Marthandan N, Guidry PA, Mack SJ, Single RM, Scheuermann RH, Helmberg W. 249-P: Sequence feature variant type (SFVT) analysis of HLA DR-DQ amino acids in type 1 diabetes Human Immunology. 70. DOI: 10.1016/J.Humimm.2009.09.282  0.01
2008 Squires B, Macken C, Garcia-Sastre A, Godbole S, Noronha J, Hunt V, Chang R, Larsen CN, Klem E, Biersack K, Scheuermann RH. BioHealthBase: informatics support in the elucidation of influenza virus host pathogen interactions and virulence. Nucleic Acids Research. 36: D497-503. PMID 17965094 DOI: 10.1093/Nar/Gkm905  0.01
2007 Chen Z, McGee M, Liu Q, Scheuermann RH. A distribution free summarization method for Affymetrix GeneChip arrays. Bioinformatics (Oxford, England). 23: 321-7. PMID 17148508 DOI: 10.1093/Bioinformatics/Btl609  0.01
2007 Luo F, Yang Y, Chen CF, Chang R, Zhou J, Scheuermann RH. Modular organization of protein interaction networks. Bioinformatics (Oxford, England). 23: 207-14. PMID 17092991 DOI: 10.1093/Bioinformatics/Btl562  0.01
2007 Luo F, Yang Y, Chen C, Chang R, Zhou J, Scheuermann RH. Modular organization of protein interaction networks Bioinformatics. 23: 916-916. DOI: 10.1093/bioinformatics/btm037  0.01
2006 Domiati-Saad R, Scheuermann RH. Nucleic acid testing for viral burden and viral genotyping. Clinica Chimica Acta; International Journal of Clinical Chemistry. 363: 197-205. PMID 16098959 DOI: 10.1016/J.Cccn.2005.05.049  0.01
2006 Luo F, Zhong J, Yang Y, Scheuermann RH, Zhou J. Application of random matrix theory to biological networks Physics Letters A. 357: 420-423. DOI: 10.1016/J.Physleta.2006.04.076  0.01
2003 Jebbink J, Bai X, Rogers BB, Dawson DB, Scheuermann RH, Domiati-Saad R. Development of real-time PCR assays for the quantitative detection of Epstein-Barr virus and cytomegalovirus, comparison of TaqMan probes, and molecular beacons. The Journal of Molecular Diagnostics : Jmd. 5: 15-20. PMID 12552075 DOI: 10.1016/S1525-1578(10)60446-1  0.01
2002 Shivapurkar N, Harada K, Reddy J, Scheuermann RH, Xu Y, McKenna RW, Milchgrub S, Kroft SH, Feng Z, Gazdar AF. Presence of simian virus 40 DNA sequences in human lymphomas. Lancet (London, England). 359: 851-2. PMID 11897287 DOI: 10.1016/S0140-6736(02)07921-7  0.01
2000 Scheuermann RH, Garrard WT. MARs of antigen receptor and co-receptor genes. Critical Reviews in Eukaryotic Gene Expression. 9: 295-310. PMID 10651246 DOI: 10.1615/Critreveukargeneexpr.V9.I3-4.140  0.01
1999 Hoang MP, Rogers BB, Dawson DB, Scheuermann RH. Quantitation of 8 human herpesviruses in peripheral blood of human immunodeficiency virus-infected patients and healthy blood donors by polymerase chain reaction. American Journal of Clinical Pathology. 111: 655-9. PMID 10230356 DOI: 10.1093/AJCP/111.5.655  0.01
1999 Hoang MP, Ross KF, Brian Dawson D, Scheuermann RH, Rogers BB. Human Herpesvirus-6 and Sudden Death in Infancy: Report of a Case and Review of the Literature Journal of Forensic Sciences. 44: 14481J. DOI: 10.1520/Jfs14481J  0.01
1999 Hosler GA, Bash RO, Bai X, Jain V, Scheuermann RH. Development and Validation of a Quantitative Polymerase Chain Reaction Assay to Evaluate Minimal Residual Disease for T-Cell Acute Lymphoblastic Leukemia and Follicular Lymphoma The American Journal of Pathology. 154: 1023-1035. DOI: 10.1016/S0002-9440(10)65355-2  0.01
1998 Scheuermann RH, Picker LJ. Benefits and dangers of genetic tests Nature. 392: 14-14. DOI: 10.1038/32029-c1  0.01
1998 Hoang MP, Dawson DB, Rogers ZR, Scheuermann RH, Rogers BB. Polymerase chain reaction amplification of archival material for epstein-barr virus, cytomegalovirus, human herpesvirus 6, and parvovirus B19 in children with bone marrow hemophagocytosis Human Pathology. 29: 1074-1077. DOI: 10.1016/S0046-8177(98)90416-6  0.01
1998 Savell VH, Sherman T, Scheuermann RH, Siddiqui AM, Margraf LR. Bcl-2 Expression in Langerhans' Cell Histiocytosis Pediatric and Developmental Pathology. 1: 210-215. DOI: 10.1007/s100249900028  0.01
1997 Bai X, Hosler G, Rogers BB, Dawson DB, Scheuermann RH. Quantitative polymerase chain reaction for human herpesvirus diagnosis and measurement of Epstein–Barr virus burden in posttransplant lymphoproliferative disorder Clinical Chemistry. 43: 1843-1849. DOI: 10.1093/Clinchem/43.10.1843  0.01
1996 Scheuermann RH, Racila E. CD19 antigen in leukemia and lymphoma diagnosis and immunotherapy. Leukemia & Lymphoma. 18: 385-97. PMID 8528044 DOI: 10.3109/10428199509059636  0.01
1995 Zong RT, Scheuermann RH. Mutually exclusive interaction of a novel matrix attachment region binding protein and the NF-muNR enhancer repressor. Implications for regulation of immunoglobulin heavy chain expression. The Journal of Biological Chemistry. 270: 24010-8. PMID 7592598 DOI: 10.1074/Jbc.270.41.24010  0.01
1993 Scheuermann RH, Bauer SR. Polymerase chain reaction-based mRNA quantification using an internal standard: analysis of oncogene expression. Methods in Enzymology. 218: 446-73. PMID 7685470 DOI: 10.1016/0076-6879(93)18035-B  0.01
1993 Scheuermann RH, Bauer SR. Loss of p53 expression in Myc-induced B lineage tumors. Current Topics in Microbiology and Immunology. 182: 493-9. PMID 1490390 DOI: 10.1007/978-3-642-77633-5_62  0.01
1992 Scheuermann RH. The tetrameric structure of NF-mu NR provides a mechanism for cooperative binding to the immunoglobulin heavy chain mu enhancer. Journal of Biological Chemistry. 267: 624-634. DOI: 10.1016/s0021-9258(18)48540-7  0.01
1991 Scheuermann RH, Bauer SR. Tumorigenesis in transgenic mice expressing the c-myc oncogene with various lymphoid enhancer elements. Current Topics in Microbiology and Immunology. 166: 221-31. PMID 2073802 DOI: 10.1007/978-3-642-75889-8_28  0.01
1991 Chen U, Scheuermann RH, Wirth T, Gerster T, Roeder RG, Harshman K, Berger C. Anti-IgM antibodies down modulate mu-enhancer activity and OTF2 levels in LPS-stimulated mouse splenic B-cells. Nucleic Acids Research. 19: 5981-9. PMID 1658749 DOI: 10.1093/Nar/19.21.5981  0.01
1989 Scheuermann RH, Chen U. A developmental-specific factor binds to suppressor sites flanking the immunoglobulin heavy-chain enhancer. Genes & Development. 3: 1255-66. PMID 2792763 DOI: 10.1101/GAD.3.8.1255  0.01
1981 Helmke K, Scheuermann R, Boeder T, Oppermann M, Teuber J, Federlin K. [Antinuclear antibodies in diagnosis of rheumatic diseases (author's transl)]. Klinische Wochenschrift. 59: 287-96. PMID 7015004 DOI: 10.1007/BF01478208  0.01
2013 Prokscha T, Chow KH, Stilp E, Suter A, Luetkens H, Morenzoni E, Nieuwenhuys GJ, Salman Z, Scheuermann R. Photo-induced persistent inversion of germanium in a 200-nm-deep surface region. Scientific Reports. 3: 2569. PMID 23995307 DOI: 10.1038/Srep02569  0
2010 Ligocki AJ, Lovato L, Xiang D, Guidry P, Scheuermann RH, Willis SN, Almendinger S, Racke MK, Frohman EM, Hafler DA, O'Connor KC, Monson NL. A unique antibody gene signature is prevalent in the central nervous system of patients with multiple sclerosis. Journal of Neuroimmunology. 226: 192-3. PMID 20655601 DOI: 10.1016/J.Jneuroim.2010.06.016  0
2009 Drew AJ, Hoppler J, Schulz L, Pratt FL, Desai P, Shakya P, Kreouzis T, Gillin WP, Suter A, Morley NA, Malik VK, Dubroka A, Kim KW, Bouyanfif H, Bourqui F, ... ... Scheuermann R, et al. Direct measurement of the electronic spin diffusion length in a fully functional organic spin valve by low-energy muon spin rotation. Nature Materials. 8: 109-14. PMID 19029892 DOI: 10.1038/Nmat2333  0
2009 He Y, Cowell L, Diehl AD, Mobley H, Peters B, Ruttenberg A, Scheuermann RH, Brinkman RR, Courtot M, Mungall C, Xiang Z, Chen F, Todd T, Colby L, Rush H, et al. VO: Vaccine Ontology Nature Precedings. 4: 1-1. DOI: 10.1038/Npre.2009.3552.1  0
2009 Scheuermann RH, Kong M, Dahlke C, Karp D. An Ontology-Based Framework for Clinical Research Databases Nature Precedings. DOI: 10.1038/Npre.2009.3482.1  0
2007 Squires B, Scheuermann R, Bortz E, Steel J, Marsh G. Influenza Life Cycle Reactome - a Curated Knowledgebase of Biological Pathways. 21. DOI: 10.3180/React_6145.3  0
2000 Hosler G, Bash R, Scheuermann R. Kinetics of early therapeutic response as measured by quantitative PCR predicts survival in a murine xenograft model of human T cell acute lymphoblastic leukemia. Leukemia. 14: 1215-1224. PMID 10914545 DOI: 10.1038/Sj.Leu.2401814  0
2000 Hsueh RC, Scheuermann RH. Tyrosine kinase activation in the decision between growth, differentiation, and death responses initiated from the B cell antigen receptor. Advances in Immunology. 75: 283-316. PMID 10879287 DOI: 10.1016/S0065-2776(00)75007-3  0
1999 Webb C, Zong RT, Lin D, Wang Z, Kaplan M, Paulin Y, Smith E, Probst L, Bryant J, Goldstein A, Scheuermann R, Tucker P. Differential regulation of immunoglobulin gene transcription via nuclear matrix-associated regions. Cold Spring Harbor Symposia On Quantitative Biology. 64: 109-118. PMID 11232275 DOI: 10.1101/Sqb.1999.64.109  0
1998 Savell VH, Sherman T, Scheuermann RH, Siddiqui AM, Margraf LR. Bcl-2 expression in Langerhans' cell histiocytosis. Pediatric and Developmental Pathology : the Official Journal of the Society For Pediatric Pathology and the Paediatric Pathology Society. 1: 210-5. PMID 10463280 DOI: 10.1007/S100249900028  0
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