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James K. Fredrickson - Publications

Affiliations: 
Biological Sciences Pacific Northwest National Laboratory, Richland, WA, United States 
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Year Citation  Score
2020 Madigan MT, Kempher ML, Bender KS, Jung DO, Sattley WM, Lindemann SR, Konopka AE, Dohnalkova AC, Fredrickson JK. A Green Sulfur Bacterium From Epsomitic Hot Lake, Washington, USA. Canadian Journal of Microbiology. PMID 33136441 DOI: 10.1139/cjm-2020-0462  0.636
2020 Anderton CR, Mobberley JM, Cole JK, Nunez JR, Starke R, Boaro AA, Yesiltepe Y, Morton BR, Cory AB, Cardamone HC, Hofmockel KS, Lipton MS, Moran JJ, Renslow RS, Fredrickson JK, et al. Nitrogen Source Governs Community Carbon Metabolism in a Model Hypersaline Benthic Phototrophic Biofilm. Msystems. 5. PMID 32518194 DOI: 10.1128/mSystems.00260-20  0.654
2019 Lee JY, Haruta S, Kato S, Bernstein HC, Lindemann SR, Lee DY, Fredrickson JK, Song HS. Prediction of Neighbor-Dependent Microbial Interactions From Limited Population Data. Frontiers in Microbiology. 10: 3049. PMID 32038529 DOI: 10.3389/Fmicb.2019.03049  0.654
2019 Song HS, Lee JY, Haruta S, Nelson WC, Lee DY, Lindemann SR, Fredrickson JK, Bernstein HC. Minimal Interspecies Interaction Adjustment (MIIA): Inference of Neighbor-Dependent Interactions in Microbial Communities. Frontiers in Microbiology. 10: 1264. PMID 31263456 DOI: 10.3389/Fmicb.2019.01264  0.662
2018 Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J. Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology. Nature Communications. 9: 585. PMID 29422537 DOI: 10.1038/S41467-018-02922-9  0.366
2017 Yang Y, Wu Y, Hu Y, Wang H, Guo L, Fredrickson JK, Cao B. Harnessing the periplasm of bacteria to develop biocatalyst for biosynthesis of highly pure chemicals. Applied and Environmental Microbiology. PMID 29079618 DOI: 10.1128/Aem.01693-17  0.311
2017 Song HS, Thomas DG, Stegen JC, Li M, Liu C, Song X, Chen X, Fredrickson JK, Zachara JM, Scheibe TD. Regulation-Structured Dynamic Metabolic Model Provides a Potential Mechanism for Delayed Enzyme Response in Denitrification Process. Frontiers in Microbiology. 8: 1866. PMID 29046664 DOI: 10.3389/Fmicb.2017.01866  0.331
2017 Bernstein HC, Brislawn CJ, Dana K, Flores-Wentz T, Cory AB, Fansler SJ, Fredrickson JK, Moran JJ. Primary and heterotrophic productivity relate to multi-kingdom diversity in a hypersaline mat. Fems Microbiology Ecology. PMID 29045626 DOI: 10.1093/Femsec/Fix121  0.36
2017 Hou Z, Nelson WC, Stegen JC, Murray CJ, Arntzen E, Crump AR, Kennedy DW, Perkins MC, Scheibe TD, Fredrickson JK, Zachara JM. Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies. Scientific Reports. 7: 12006. PMID 28931901 DOI: 10.1038/S41598-017-12275-W  0.392
2017 Lindemann SR, Mobberley JM, Cole JK, Markillie LM, Taylor RC, Huang E, Chrisler WB, Wiley HS, Lipton MS, Nelson WC, Fredrickson JK, Romine MF. Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated 'Omics Approach. Frontiers in Microbiology. 8: 1020. PMID 28659875 DOI: 10.3389/Fmicb.2017.01020  0.688
2017 Li M, Gao Y, Qian WJ, Shi L, Liu Y, Nelson WC, Nicora CD, Resch CT, Thompson C, Yan S, Fredrickson JK, Zachara JM, Liu C. Targeted Quantification of Functional Enzyme Dynamics in Environmental Samples for Microbially Mediated Biogeochemical Processes. Environmental Microbiology Reports. PMID 28618201 DOI: 10.1111/1758-2229.12558  0.304
2017 Liu Y, Liu C, Nelson WC, Shi L, Xu F, Liu Y, Yan A, Zhong L, Thompson CJ, Fredrickson JK, Zachara J. Effect of Water Chemistry and Hydrodynamics on Nitrogen Transformation Activity and Microbial Community Functional Potential in Hyporheic Zone Sediment Columns. Environmental Science & Technology. PMID 28391700 DOI: 10.1021/Acs.Est.6B05018  0.333
2017 Ha PT, Lindemann SR, Shi L, Dohnalkova AC, Fredrickson JK, Madigan MT, Beyenal H. Syntrophic anaerobic photosynthesis via direct interspecies electron transfer. Nature Communications. 8: 13924. PMID 28067226 DOI: 10.1038/Ncomms13924  0.674
2017 Goldman AE, Graham EB, Crump AR, Kennedy DW, Romero EB, Anderson CG, Dana KL, Resch CT, Fredrickson JK, Stegen JC. Carbon cycling at the aquatic-terrestrial interface is linked to parafluvial hyporheic zone inundation history Biogeosciences Discussions. 1-20. DOI: 10.5194/Bg-2017-28  0.42
2017 Goldman AE, Graham EB, Crump AR, Kennedy DW, Romero EB, Anderson CG, Dana KL, Resch CT, Fredrickson JK, Stegen JC. Biogeochemical cycling at the aquatic–terrestrial interface is linked to parafluvial hyporheic zone inundation history Biogeosciences. 14: 4229-4241. DOI: 10.5194/Bg-14-4229-2017  0.418
2017 Renslow RS, Ahmed B, Nuñez JR, Cao B, Majors PD, Fredrickson JK, Beyenal H. Modeling Substrate Utilization, Metabolite Production, and Uranium Immobilization in Shewanella oneidensis Biofilms Frontiers in Environmental Science. 5. DOI: 10.3389/Fenvs.2017.00030  0.318
2016 Graham EB, Crump AR, Resch CT, Fansler S, Arntzen E, Kennedy DW, Fredrickson JK, Stegen JC. Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism. Frontiers in Microbiology. 7: 1949. PMID 28123379 DOI: 10.3389/Fmicb.2016.01949  0.374
2016 Bernstein HC, Brislawn C, Renslow RS, Dana K, Morton B, Lindemann SR, Song HS, Atci E, Beyenal H, Fredrickson JK, Jansson JK, Moran JJ. Trade-offs between microbiome diversity and productivity in a stratified microbial mat. The Isme Journal. PMID 27801910 DOI: 10.1038/Ismej.2016.133  0.657
2016 Ding Y, Zhou Y, Yao J, Szymanski C, Fredrickson JK, Shi L, Cao B, Zhu Z, Yu XY. In Situ Molecular Imaging of the Biofilm and Its Matrix. Analytical Chemistry. PMID 27709903 DOI: 10.1021/Acs.Analchem.6B03909  0.35
2016 Shi L, Dong H, Reguera G, Beyenal H, Lu A, Liu J, Yu HQ, Fredrickson JK. Extracellular electron transfer mechanisms between microorganisms and minerals. Nature Reviews. Microbiology. PMID 27573579 DOI: 10.1038/Nrmicro.2016.93  0.335
2016 Stegen JC, Konopka A, McKinley JP, Murray C, Lin X, Miller MD, Kennedy DW, Miller EA, Resch CT, Fredrickson JK. Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies. Scientific Reports. 6: 30553. PMID 27469056 DOI: 10.1038/Srep30553  0.396
2016 Bernstein HC, McClure RS, Hill EA, Markillie LM, Chrisler WB, Romine MF, McDermott JE, Posewitz MC, Bryant DA, Konopka AE, Fredrickson JK, Beliaev AS. Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth. Mbio. 7. PMID 27460798 DOI: 10.1128/Mbio.00949-16  0.339
2016 Stegen JC, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Danczak RE, Fansler SJ, Kennedy DW, Resch CT, Tfaily M. Groundwater-surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover. Nature Communications. 7: 11237. PMID 27052662 DOI: 10.1038/Ncomms11237  0.378
2016 Wei H, Dai J, Xia M, Romine MF, Shi L, Beliav A, Tiedje JM, Nealson KH, Fredrickson JK, Zhou J, Qiu D. Functional Roles of CymA and NapC in Reduction of Nitrate and Nitrite by Shewanella putrefaciens W3-18-1. Microbiology (Reading, England). PMID 27010745 DOI: 10.1099/Mic.0.000285  0.331
2016 Lindemann SR, Bernstein HC, Song HS, Fredrickson JK, Fields MW, Shou W, Johnson DR, Beliaev AS. Engineering microbial consortia for controllable outputs. The Isme Journal. PMID 26967105 DOI: 10.1038/Ismej.2016.26  0.675
2016 Klotz MG, Bryant DA, Fredrickson JK, Inskeep WP, Kühl M. Editorial: Systems Biology and Ecology of Microbial Mat Communities. Frontiers in Microbiology. 7: 115. PMID 26903994 DOI: 10.3389/Fmicb.2016.00115  0.419
2016 Mohamed A, Ewing T, Lindemann SR, Fredrickson JK, Beyenal H. Autonomous Device for Evaluating the Field Performance of Microbial Fuel Cells in Remote Areas Journal of the Electrochemical Society. 164: H3030-H3036. DOI: 10.1149/2.0041703Jes  0.601
2016 Zachara JM, Moran JJ, Resch CT, Lindemann SR, Felmy AR, Bowden ME, Cory AB, Fredrickson JK. Geo- and biogeochemical processes in a heliothermal hypersaline lake Geochimica Et Cosmochimica Acta. 181: 144-163. DOI: 10.1016/J.Gca.2016.02.001  0.654
2015 Song HS, Renslow RS, Fredrickson JK, Lindemann SR. Integrating Ecological and Engineering Concepts of Resilience in Microbial Communities. Frontiers in Microbiology. 6: 1298. PMID 26648912 DOI: 10.3389/Fmicb.2015.01298  0.66
2015 Liu Y, Fredrickson JK, Zachara JM, Shi L. Direct involvement of ombB, omaB, and omcB genes in extracellular reduction of Fe(III) by Geobacter sulfurreducens PCA. Frontiers in Microbiology. 6: 1075. PMID 26483786 DOI: 10.3389/Fmicb.2015.01075  0.326
2015 Ha PT, Renslow RS, Atci E, Reardon PN, Lindemann SR, Fredrickson JK, Call DR, Beyenal H. Regulation of electron transfer processes affects phototrophic mat structure and activity. Frontiers in Microbiology. 6: 909. PMID 26388853 DOI: 10.3389/Fmicb.2015.00909  0.663
2015 Yan S, Liu Y, Liu C, Shi L, Shang J, Shan H, Zachara J, Fredrickson J, Kennedy D, Resch CT, Thompson C, Fansler S. Nitrate bioreduction in redox-variable low permeability sediments. The Science of the Total Environment. 539: 185-195. PMID 26363392 DOI: 10.1016/J.Scitotenv.2015.08.122  0.342
2015 Edwards MJ, White GF, Norman M, Tome-Fernandez A, Ainsworth E, Shi L, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA. Redox Linked Flavin Sites in Extracellular Decaheme Proteins Involved in Microbe-Mineral Electron Transfer. Scientific Reports. 5: 11677. PMID 26126857 DOI: 10.1038/Srep11677  0.35
2015 Fredrickson JK. ECOLOGY. Ecological communities by design. Science (New York, N.Y.). 348: 1425-7. PMID 26113703 DOI: 10.1126/Science.Aab0946  0.365
2015 Stegen JC, Lin X, Fredrickson JK, Konopka AE. Estimating and mapping ecological processes influencing microbial community assembly. Frontiers in Microbiology. 6: 370. PMID 25983725 DOI: 10.3389/Fmicb.2015.00370  0.358
2015 Kim YM, Nowack S, Olsen MT, Becraft ED, Wood JM, Thiel V, Klapper I, Kühl M, Fredrickson JK, Bryant DA, Ward DM, Metz TO. Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms. Frontiers in Microbiology. 6: 209. PMID 25941514 DOI: 10.3389/Fmicb.2015.00209  0.366
2015 Lee JH, Fredrickson JK, Plymale AE, Dohnalkova AC, Resch CT, McKinley JP, Shi L. An autotrophic H2 -oxidizing, nitrate-respiring, Tc(VII)-reducing Acidovorax sp. isolated from a subsurface oxic-anoxic transition zone. Environmental Microbiology Reports. 7: 395-403. PMID 25558059 DOI: 10.1111/1758-2229.12263  0.313
2015 Konopka A, Lindemann S, Fredrickson J. Dynamics in microbial communities: unraveling mechanisms to identify principles. The Isme Journal. 9: 1488-95. PMID 25526370 DOI: 10.1038/Ismej.2014.251  0.657
2015 Rodionova IA, Li X, Plymale AE, Motamedchaboki K, Konopka AE, Romine MF, Fredrickson JK, Osterman AL, Rodionov DA. Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chloroflexi phylum. Environmental Microbiology Reports. 7: 204-10. PMID 25345570 DOI: 10.1111/1758-2229.12227  0.31
2015 Wang Z, Shi Z, Shi L, White GF, Richardson DJ, Clarke TA, Fredrickson JK, Zachara JM. Effects of soluble flavin on heterogeneous electron transfer between surface-exposed bacterial cytochromes and iron oxides Geochimica Et Cosmochimica Acta. 163: 299-310. DOI: 10.1016/J.Gca.2015.03.039  0.346
2014 Wilkins MJ, Kennedy DW, Castelle CJ, Field EK, Stepanauskas R, Fredrickson JK, Konopka AE. Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer. Microbiology (Reading, England). 160: 362-372. PMID 28206912 DOI: 10.1099/Mic.0.073965-0  0.378
2014 Shi L, Fredrickson JK, Zachara JM. Genomic analyses of bacterial porin-cytochrome gene clusters. Frontiers in Microbiology. 5: 657. PMID 25505896 DOI: 10.3389/Fmicb.2014.00657  0.32
2014 Wilkins MJ, Daly RA, Mouser PJ, Trexler R, Sharma S, Cole DR, Wrighton KC, Biddle JF, Denis EH, Fredrickson JK, Kieft TL, Onstott TC, Peterson L, Pfiffner SM, Phelps TJ, et al. Trends and future challenges in sampling the deep terrestrial biosphere. Frontiers in Microbiology. 5: 481. PMID 25309520 DOI: 10.3389/Fmicb.2014.00481  0.301
2014 Moran JJ, Doll CG, Bernstein HC, Renslow RS, Cory AB, Hutchison JR, Lindemann SR, Fredrickson JK. Spatially tracking (13) C-labelled substrate (bicarbonate) accumulation in microbial communities using laser ablation isotope ratio mass spectrometry. Environmental Microbiology Reports. 6: 786-91. PMID 25155264 DOI: 10.1111/1758-2229.12211  0.647
2014 Liu Y, Wang Z, Liu J, Levar C, Edwards MJ, Babauta JT, Kennedy DW, Shi Z, Beyenal H, Bond DR, Clarke TA, Butt JN, Richardson DJ, Rosso KM, Zachara JM, ... Fredrickson JK, et al. A trans-outer membrane porin-cytochrome protein complex for extracellular electron transfer by Geobacter sulfurreducens PCA. Environmental Microbiology Reports. 6: 776-85. PMID 25139405 DOI: 10.1111/1758-2229.12204  0.315
2014 Beliaev AS, Romine MF, Serres M, Bernstein HC, Linggi BE, Markillie LM, Isern NG, Chrisler WB, Kucek LA, Hill EA, Pinchuk GE, Bryant DA, Wiley HS, Fredrickson JK, Konopka A. Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing. The Isme Journal. 8: 2243-55. PMID 24781900 DOI: 10.1038/Ismej.2014.69  0.366
2014 Cole JK, Hutchison JR, Renslow RS, Kim YM, Chrisler WB, Engelmann HE, Dohnalkova AC, Hu D, Metz TO, Fredrickson JK, Lindemann SR. Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions. Frontiers in Microbiology. 5: 109. PMID 24778628 DOI: 10.3389/Fmicb.2014.00109  0.688
2014 Stolyar S, Liu Z, Thiel V, Tomsho LP, Pinel N, Nelson WC, Lindemann SR, Romine MF, Haruta S, Schuster SC, Bryant DA, Fredrickson JK. Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a. Genome Announcements. 2. PMID 24482507 DOI: 10.1128/Genomea.01060-13  0.627
2014 Babauta JT, Atci E, Ha PT, Lindemann SR, Ewing T, Call DR, Fredrickson JK, Beyenal H. Localized electron transfer rates and microelectrode-based enrichment of microbial communities within a phototrophic microbial mat. Frontiers in Microbiology. 5: 11. PMID 24478768 DOI: 10.3389/Fmicb.2014.00011  0.691
2014 Lee J, Zachara JM, Fredrickson JK, Heald SM, McKinley JP, Plymale AE, Resch CT, Moore DA. Fe(II)- and sulfide-facilitated reduction of 99Tc(VII)O4− in microbially reduced hyporheic zone sediments Geochimica Et Cosmochimica Acta. 136: 247-264. DOI: 10.1016/J.Gca.2013.08.017  0.355
2013 Lindemann SR, Moran JJ, Stegen JC, Renslow RS, Hutchison JR, Cole JK, Dohnalkova AC, Tremblay J, Singh K, Malfatti SA, Chen F, Tringe SG, Beyenal H, Fredrickson JK. The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling. Frontiers in Microbiology. 4: 323. PMID 24312082 DOI: 10.3389/Fmicb.2013.00323  0.685
2013 Renslow R, Babauta J, Kuprat A, Schenk J, Ivory C, Fredrickson J, Beyenal H. Modeling biofilms with dual extracellular electron transfer mechanisms. Physical Chemistry Chemical Physics : Pccp. 15: 19262-83. PMID 24113651 DOI: 10.1039/C3Cp53759E  0.324
2013 Stegen JC, Lin X, Fredrickson JK, Chen X, Kennedy DW, Murray CJ, Rockhold ML, Konopka A. Quantifying community assembly processes and identifying features that impose them. The Isme Journal. 7: 2069-79. PMID 23739053 DOI: 10.1038/Ismej.2013.93  0.372
2013 White GF, Shi Z, Shi L, Wang Z, Dohnalkova AC, Marshall MJ, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA. Rapid electron exchange between surface-exposed bacterial cytochromes and Fe(III) minerals. Proceedings of the National Academy of Sciences of the United States of America. 110: 6346-51. PMID 23538304 DOI: 10.1073/Pnas.1220074110  0.352
2013 Zachara JM, Long PE, Bargar J, Davis JA, Fox P, Fredrickson JK, Freshley MD, Konopka AE, Liu C, McKinley JP, Rockhold ML, Williams KH, Yabusaki SB. Persistence of uranium groundwater plumes: contrasting mechanisms at two DOE sites in the groundwater-river interaction zone. Journal of Contaminant Hydrology. 147: 45-72. PMID 23500840 DOI: 10.1016/J.Jconhyd.2013.02.001  0.342
2013 Wang Y, Sevinc PC, Belchik SM, Fredrickson J, Shi L, Lu HP. Single-cell imaging and spectroscopic analyses of Cr(VI) reduction on the surface of bacterial cells. Langmuir : the Acs Journal of Surfaces and Colloids. 29: 950-6. PMID 23249294 DOI: 10.1021/La303779Y  0.304
2013 Renslow RS, Babauta JT, Dohnalkova AC, Boyanov MI, Kemner KM, Majors PD, Fredrickson JK, Beyenal H. Metabolic spatial variability in electrode-respiring Geobacter sulfurreducens biofilms Energy and Environmental Science. 6: 1827-1836. DOI: 10.1039/C3Ee40203G  0.337
2012 Shi L, Rosso KM, Zachara JM, Fredrickson JK. Mtr extracellular electron-transfer pathways in Fe(III)-reducing or Fe(II)-oxidizing bacteria: a genomic perspective. Biochemical Society Transactions. 40: 1261-7. PMID 23176465 DOI: 10.1042/Bst20120098  0.374
2012 Marritt SJ, McMillan DG, Shi L, Fredrickson JK, Zachara JM, Richardson DJ, Jeuken LJ, Butt JN. The roles of CymA in support of the respiratory flexibility of Shewanella oneidensis MR-1. Biochemical Society Transactions. 40: 1217-21. PMID 23176457 DOI: 10.1042/Bst20120150  0.362
2012 Richardson DJ, Fredrickson JK, Zachara JM. Electron transport at the microbe-mineral interface: a synthesis of current research challenges. Biochemical Society Transactions. 40: 1163-6. PMID 23176448 DOI: 10.1042/Bst20120242  0.354
2012 Shi Z, Zachara JM, Shi L, Wang Z, Moore DA, Kennedy DW, Fredrickson JK. Redox reactions of reduced flavin mononucleotide (FMN), riboflavin (RBF), and anthraquinone-2,6-disulfonate (AQDS) with ferrihydrite and lepidocrocite. Environmental Science & Technology. 46: 11644-52. PMID 22985396 DOI: 10.1021/Es301544B  0.311
2012 Ahmed B, Cao B, McLean JS, Ica T, Dohnalkova A, Istanbullu O, Paksoy A, Fredrickson JK, Beyenal H. Fe(III) reduction and U(VI) immobilization by Paenibacillus sp. strain 300A, isolated from Hanford 300A subsurface sediments. Applied and Environmental Microbiology. 78: 8001-9. PMID 22961903 DOI: 10.1128/Aem.01844-12  0.314
2012 Cao B, Majors PD, Ahmed B, Renslow RS, Silvia CP, Shi L, Kjelleberg S, Fredrickson JK, Beyenal H. Biofilm shows spatially stratified metabolic responses to contaminant exposure. Environmental Microbiology. 14: 2901-10. PMID 22925136 DOI: 10.1111/J.1462-2920.2012.02850.X  0.327
2012 Pearce CI, Wilkins MJ, Zhang C, Heald SM, Fredrickson JK, Zachara JM. Pore-scale characterization of biogeochemical controls on iron and uranium speciation under flow conditions. Environmental Science & Technology. 46: 7992-8000. PMID 22731932 DOI: 10.1021/Es301050H  0.328
2012 Edwards MJ, Hall A, Shi L, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA. The crystal structure of the extracellular 11-heme cytochrome UndA reveals a conserved 10-heme motif and defined binding site for soluble iron chelates. Structure (London, England : 1993). 20: 1275-84. PMID 22682743 DOI: 10.1016/J.Str.2012.04.016  0.311
2012 Vu TT, Stolyar SM, Pinchuk GE, Hill EA, Kucek LA, Brown RN, Lipton MS, Osterman A, Fredrickson JK, Konopka AE, Beliaev AS, Reed JL. Genome-scale modeling of light-driven reductant partitioning and carbon fluxes in diazotrophic unicellular cyanobacterium Cyanothece sp. ATCC 51142. Plos Computational Biology. 8: e1002460. PMID 22529767 DOI: 10.1371/Journal.Pcbi.1002460  0.344
2012 Marritt SJ, Lowe TG, Bye J, McMillan DG, Shi L, Fredrickson J, Zachara J, Richardson DJ, Cheesman MR, Jeuken LJ, Butt JN. A functional description of CymA, an electron-transfer hub supporting anaerobic respiratory flexibility in Shewanella. The Biochemical Journal. 444: 465-74. PMID 22458729 DOI: 10.1042/Bj20120197  0.312
2012 Stegen JC, Lin X, Konopka AE, Fredrickson JK. Stochastic and deterministic assembly processes in subsurface microbial communities. The Isme Journal. 6: 1653-64. PMID 22456445 DOI: 10.1038/Ismej.2012.22  0.358
2012 Lin X, McKinley J, Resch CT, Kaluzny R, Lauber CL, Fredrickson J, Knight R, Konopka A. Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer. The Isme Journal. 6: 1665-76. PMID 22456444 DOI: 10.1038/Ismej.2012.26  0.372
2012 Lee JH, Fredrickson JK, Kukkadapu RK, Boyanov MI, Kemner KM, Lin X, Kennedy DW, Bjornstad BN, Konopka AE, Moore DA, Resch CT, Phillips JL. Microbial reductive transformation of phyllosilicate Fe(III) and U(VI) in fluvial subsurface sediments. Environmental Science & Technology. 46: 3721-30. PMID 22414073 DOI: 10.1021/Es204528M  0.355
2012 Shi L, Rosso KM, Clarke TA, Richardson DJ, Zachara JM, Fredrickson JK. Molecular Underpinnings of Fe(III) Oxide Reduction by Shewanella Oneidensis MR-1. Frontiers in Microbiology. 3: 50. PMID 22363328 DOI: 10.3389/Fmicb.2012.00050  0.358
2012 Liu J, Wang Z, Belchik SM, Edwards MJ, Liu C, Kennedy DW, Merkley ED, Lipton MS, Butt JN, Richardson DJ, Zachara JM, Fredrickson JK, Rosso KM, Shi L. Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1. Frontiers in Microbiology. 3: 37. PMID 22347878 DOI: 10.3389/Fmicb.2012.00037  0.31
2012 Plymale AE, Bailey VL, Fredrickson JK, Heald SM, Buck EC, Shi L, Wang Z, Resch CT, Moore DA, Bolton H. Biotic and abiotic reduction and solubilization of Pu(IV)O₂•xH₂O(am) as affected by anthraquinone-2,6-disulfonate (AQDS) and ethylenediaminetetraacetate (EDTA). Environmental Science & Technology. 46: 2132-40. PMID 22276620 DOI: 10.1021/Es2030752  0.308
2012 Lin X, Kennedy D, Peacock A, McKinley J, Resch CT, Fredrickson J, Konopka A. Distribution of microbial biomass and potential for anaerobic respiration in Hanford Site 300 Area subsurface sediment. Applied and Environmental Microbiology. 78: 759-67. PMID 22138990 DOI: 10.1128/Aem.07404-11  0.321
2012 Lin X, Kennedy D, Fredrickson J, Bjornstad B, Konopka A. Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site. Environmental Microbiology. 14: 414-25. PMID 22122741 DOI: 10.1111/J.1462-2920.2011.02659.X  0.404
2012 Nguyen HD, Cao B, Mishra B, Boyanov MI, Kemner KM, Fredrickson JK, Beyenal H. Microscale geochemical gradients in Hanford 300 Area sediment biofilms and influence of uranium. Water Research. 46: 227-34. PMID 22078229 DOI: 10.1016/J.Watres.2011.10.054  0.339
2012 Lindemann S, Moran J, Dohnalkova A, Kim Y, Kennedy D, Stolyar S, Majors P, Wiley H, Konopka A, Fredrickson J. Microbial Diversity and Biogeochemical Function of the Phototrophic Microbial Mats of Epsomitic Hot Lake, WA Microscopy and Microanalysis. 18: 10-11. DOI: 10.1017/S1431927612001900  0.662
2011 Xiong Y, Chen B, Shi L, Fredrickson JK, Bigelow DJ, Squier TC. Targeted protein degradation of outer membrane decaheme cytochrome MtrC metal reductase in Shewanella oneidensis MR-1 measured using biarsenical probe CrAsH-EDT(2). Biochemistry. 50: 9738-51. PMID 21999518 DOI: 10.1021/Bi200602F  0.325
2011 Pinchuk GE, Geydebrekht OV, Hill EA, Reed JL, Konopka AE, Beliaev AS, Fredrickson JK. Pyruvate and lactate metabolism by Shewanella oneidensis MR-1 under fermentation, oxygen limitation, and fumarate respiration conditions. Applied and Environmental Microbiology. 77: 8234-40. PMID 21965410 DOI: 10.1128/Aem.05382-11  0.347
2011 Leyn SA, Li X, Zheng Q, Novichkov PS, Reed S, Romine MF, Fredrickson JK, Yang C, Osterman AL, Rodionov DA. Control of proteobacterial central carbon metabolism by the HexR transcriptional regulator: a case study in Shewanella oneidensis. The Journal of Biological Chemistry. 286: 35782-94. PMID 21849503 DOI: 10.1074/Jbc.M111.267963  0.31
2011 Shi L, Belchik SM, Wang Z, Kennedy DW, Dohnalkova AC, Marshall MJ, Zachara JM, Fredrickson JK. Identification and characterization of UndAHRCR-6, an outer membrane endecaheme c-type cytochrome of Shewanella sp. strain HRCR-6. Applied and Environmental Microbiology. 77: 5521-3. PMID 21652739 DOI: 10.1128/Aem.00614-11  0.318
2011 Cao B, Ahmed B, Kennedy DW, Wang Z, Shi L, Marshall MJ, Fredrickson JK, Isern NG, Majors PD, Beyenal H. Contribution of extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms to U(VI) immobilization. Environmental Science & Technology. 45: 5483-90. PMID 21627155 DOI: 10.1021/Es200095J  0.319
2011 Cao B, Shi L, Brown RN, Xiong Y, Fredrickson JK, Romine MF, Marshall MJ, Lipton MS, Beyenal H. Extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms: characterization by infrared spectroscopy and proteomics. Environmental Microbiology. 13: 1018-31. PMID 21251176 DOI: 10.1111/J.1462-2920.2010.02407.X  0.32
2011 Plymale AE, Fredrickson JK, Zachara JM, Dohnalkova AC, Heald SM, Moore DA, Kennedy DW, Marshall MJ, Wang C, Resch CT, Nachimuthu P. Competitive reduction of pertechnetate (99TcO4-) by dissimilatory metal reducing bacteria and biogenic Fe(II). Environmental Science & Technology. 45: 951-7. PMID 21210705 DOI: 10.1021/Es1027647  0.316
2010 Turse JE, Marshall MJ, Fredrickson JK, Lipton MS, Callister SJ. An empirical strategy for characterizing bacterial proteomes across species in the absence of genomic sequences. Plos One. 5: e13968. PMID 21103051 DOI: 10.1371/Journal.Pone.0013968  0.34
2010 Pinchuk GE, Hill EA, Geydebrekht OV, De Ingeniis J, Zhang X, Osterman A, Scott JH, Reed SB, Romine MF, Konopka AE, Beliaev AS, Fredrickson JK, Reed JL. Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation. Plos Computational Biology. 6: e1000822. PMID 20589080 DOI: 10.1371/Journal.Pcbi.1000822  0.36
2010 Reardon CL, Dohnalkova AC, Nachimuthu P, Kennedy DW, Saffarini DA, Arey BW, Shi L, Wang Z, Moore D, McLean JS, Moyles D, Marshall MJ, Zachara JM, Fredrickson JK, Beliaev AS. Role of outer-membrane cytochromes MtrC and OmcA in the biomineralization of ferrihydrite by Shewanella oneidensis MR-1. Geobiology. 8: 56-68. PMID 20002197 DOI: 10.1111/J.1472-4669.2009.00226.X  0.34
2010 Karpinets TV, Obraztsova AY, Wang Y, Schmoyer DD, Kora GH, Park BH, Serres MH, Romine MF, Land ML, Kothe TB, Fredrickson JK, Nealson KH, Uberbacher EC. Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes. Functional & Integrative Genomics. 10: 97-110. PMID 19802638 DOI: 10.1007/S10142-009-0142-Y  0.311
2010 Peretyazhko T, Zachara JM, Kennedy DW, Fredrickson JK, Arey BW, McKinley JP, Wang CM, Dohnalkova A, Xia Y. Ferrous phosphate surface precipitates resulting from the reduction of intragrain 6-line ferrihydrite by Shewanella oneidensis MR-1 Geochimica Et Cosmochimica Acta. 74: 3751-3767. DOI: 10.1016/J.Gca.2010.04.008  0.326
2010 Bouhenni RA, Vora GJ, Biffinger JC, Shirodkar S, Brockman K, Ray R, Wu P, Johnson BJ, Biddle EM, Marshall MJ, Fitzgerald LA, Little BJ, Fredrickson JK, Beliaev AS, Ringeisen BR, et al. The role of Shewanella oneidensis MR-1 outer surface structures in extracellular electron transfer Electroanalysis. 22: 856-864. DOI: 10.1002/Elan.200880006  0.318
2009 Konstantinidis KT, Serres MH, Romine MF, Rodrigues JL, Auchtung J, McCue LA, Lipton MS, Obraztsova A, Giometti CS, Nealson KH, Fredrickson JK, Tiedje JM. Comparative systems biology across an evolutionary gradient within the Shewanella genus. Proceedings of the National Academy of Sciences of the United States of America. 106: 15909-14. PMID 19805231 DOI: 10.1073/Pnas.0902000106  0.335
2009 Liu C, Zachara JM, Zhong L, Heald SM, Wang Z, Jeon BH, Fredrickson JK. Microbial reduction of intragrain U(VI) in contaminated sediment. Environmental Science & Technology. 43: 4928-33. PMID 19673287 DOI: 10.1021/Es8029208  0.352
2009 Charania MA, Brockman KL, Zhang Y, Banerjee A, Pinchuk GE, Fredrickson JK, Beliaev AS, Saffarini DA. Involvement of a membrane-bound class III adenylate cyclase in regulation of anaerobic respiration in Shewanella oneidensis MR-1. Journal of Bacteriology. 191: 4298-306. PMID 19395492 DOI: 10.1128/Jb.01829-08  0.331
2009 Gao H, Yang ZK, Barua S, Reed SB, Romine MF, Nealson KH, Fredrickson JK, Tiedje JM, Zhou J. Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA. The Isme Journal. 3: 966-76. PMID 19387485 DOI: 10.1038/Ismej.2009.40  0.325
2009 Pinchuk GE, Rodionov DA, Yang C, Li X, Osterman AL, Dervyn E, Geydebrekht OV, Reed SB, Romine MF, Collart FR, Scott JH, Fredrickson JK, Beliaev AS. Genomic reconstruction of Shewanella oneidensis MR-1 metabolism reveals a previously uncharacterized machinery for lactate utilization. Proceedings of the National Academy of Sciences of the United States of America. 106: 2874-9. PMID 19196979 DOI: 10.1073/Pnas.0806798106  0.342
2009 Marshall MJ, Dohnalkova AC, Kennedy DW, Plymale AE, Thomas SH, Löffler FE, Sanford RA, Zachara JM, Fredrickson JK, Beliaev AS. Electron donor-dependent radionuclide reduction and nanoparticle formation by Anaeromyxobacter dehalogenans strain 2CP-C. Environmental Microbiology. 11: 534-43. PMID 19196283 DOI: 10.1111/J.1462-2920.2008.01795.X  0.329
2009 Fredrickson JK, Zachara JM, Plymale AE, Heald SM, McKinley JP, Kennedy DW, Liu C, Nachimuthu P. Oxidative Dissolution Potential of Biogenic and Abiogenic TcO2 in Subsurface Sediments Geochimica Et Cosmochimica Acta. 73: 2299-2313. DOI: 10.1016/J.Gca.2009.01.027  0.347
2009 Jaisi DP, Dong H, Plymale AE, Fredrickson JK, Zachara JM, Heald S, Liu C. Reduction and long-term immobilization of technetium by Fe(II) associated with clay mineral nontronite Chemical Geology. 264: 127-138. DOI: 10.1016/J.Chemgeo.2009.02.018  0.33
2008 Clarke TA, Holley T, Hartshorne RS, Fredrickson JK, Zachara JM, Shi L, Richardson DJ. The role of multihaem cytochromes in the respiration of nitrite in Escherichia coli and Fe(III) in Shewanella oneidensis Biochemical Society Transactions. 36: 1005-1010. PMID 18793179 DOI: 10.1042/Bst0361005  0.345
2008 Wang Z, Liu C, Wang X, Marshall MJ, Zachara JM, Rosso KM, Dupuis M, Fredrickson JK, Heald S, Shi L. Kinetics of reduction of Fe(III) complexes by outer membrane cytochromes MtrC and OmcA of Shewanella oneidensis MR-1. Applied and Environmental Microbiology. 74: 6746-55. PMID 18791025 DOI: 10.1128/Aem.01454-08  0.317
2008 Fredrickson JK, Romine MF, Beliaev AS, Auchtung JM, Driscoll ME, Gardner TS, Nealson KH, Osterman AL, Pinchuk G, Reed JL, Rodionov DA, Rodrigues JL, Saffarini DA, Serres MH, Spormann AM, et al. Towards environmental systems biology of Shewanella. Nature Reviews. Microbiology. 6: 592-603. PMID 18604222 DOI: 10.1038/Nrmicro1947  0.382
2008 Fredrickson JK, Zachara JM. Electron transfer at the microbe-mineral interface: a grand challenge in biogeochemistry. Geobiology. 6: 245-253. PMID 18498527 DOI: 10.1111/J.1472-4669.2008.00146.X  0.366
2008 McLean JS, Majors PD, Reardon CL, Bilskis CL, Reed SB, Romine MF, Fredrickson JK. Investigations of structure and metabolism within Shewanella oneidensis MR-1 biofilms. Journal of Microbiological Methods. 74: 47-56. PMID 18448180 DOI: 10.1016/J.Mimet.2008.02.015  0.37
2008 McLean JS, Pinchuk GE, Geydebrekht OV, Bilskis CL, Zakrajsek BA, Hill EA, Saffarini DA, Romine MF, Gorby YA, Fredrickson JK, Beliaev AS. Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1. Environmental Microbiology. 10: 1861-76. PMID 18412550 DOI: 10.1111/J.1462-2920.2008.01608.X  0.318
2008 Fredrickson JK, Li SM, Gaidamakova EK, Matrosova VY, Zhai M, Sulloway HM, Scholten JC, Brown MG, Balkwill DL, Daly MJ. Protein oxidation: key to bacterial desiccation resistance? The Isme Journal. 2: 393-403. PMID 18273068 DOI: 10.1038/Ismej.2007.116  0.315
2008 Pinchuk GE, Ammons C, Culley DE, Li SM, McLean JS, Romine MF, Nealson KH, Fredrickson JK, Beliaev AS. Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction. Applied and Environmental Microbiology. 74: 1198-208. PMID 18156329 DOI: 10.1128/Aem.02026-07  0.305
2008 Elias DA, Tollaksen SL, Kennedy DW, Mottaz HM, Giometti CS, McLean JS, Hill EA, Pinchuk GE, Lipton MS, Fredrickson JK, Gorby YA. The influence of cultivation methods on Shewanella oneidensis physiology and proteome expression. Archives of Microbiology. 189: 313-24. PMID 18030449 DOI: 10.1007/S00203-007-0321-Y  0.323
2008 Marshall MJ, Plymale AE, Kennedy DW, Shi L, Wang Z, Reed SB, Dohnalkova AC, Simonson CJ, Liu C, Saffarini DA, Romine MF, Zachara JM, Beliaev AS, Fredrickson JK. Hydrogenase- and outer membrane c-type cytochrome-facilitated reduction of technetium(VII) by Shewanella oneidensis MR-1. Environmental Microbiology. 10: 125-36. PMID 17888007 DOI: 10.1111/J.1462-2920.2007.01438.X  0.318
2008 Bretschger O, Obraztsova A, Sturm CA, In SC, Gorby YA, Reed SB, Culley DE, Reardon CL, Barua S, Romine MF, Zhou J, Beliaev AS, Bouhenni R, Saffarini D, Mansfeld F, ... ... Fredrickson JK, et al. Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants (Applied and Environmental Microbiology (2007) 73, 21, (7003-7012)) Applied and Environmental Microbiology. 74: 553. DOI: 10.1128/Aem.02560-07  0.343
2007 Driscoll ME, Romine MF, Juhn FS, Serres MH, McCue LA, Beliaev AS, Fredrickson JK, Gardner TS. Identification of diverse carbon utilization pathways in Shewanella oneidensis MR-1 via expression profiling. Genome Informatics. International Conference On Genome Informatics. 18: 287-98. PMID 18546496 DOI: 10.11234/Gi1990.18.287  0.32
2007 Hartshorne RS, Jepson BN, Clarke TA, Field SJ, Fredrickson J, Zachara J, Shi L, Butt JN, Richardson DJ. Characterization of Shewanella oneidensis MtrC: a cell-surface decaheme cytochrome involved in respiratory electron transport to extracellular electron acceptors. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 12: 1083-94. PMID 17701062 DOI: 10.1007/S00775-007-0278-Y  0.339
2007 Bretschger O, Obraztsova A, Sturm CA, Chang IS, Gorby YA, Reed SB, Culley DE, Reardon CL, Barua S, Romine MF, Zhou J, Beliaev AS, Bouhenni R, Saffarini D, Mansfeld F, ... ... Fredrickson JK, et al. Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants. Applied and Environmental Microbiology. 73: 7003-12. PMID 17644630 DOI: 10.1128/Aem.01087-07  0.339
2007 Shi L, Squier TC, Zachara JM, Fredrickson JK. Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c-type cytochromes. Molecular Microbiology. 65: 12-20. PMID 17581116 DOI: 10.1111/J.1365-2958.2007.05783.X  0.316
2007 Daly MJ, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Leapman RD, Lai B, Ravel B, Li SM, Kemner KM, Fredrickson JK. Protein oxidation implicated as the primary determinant of bacterial radioresistance. Plos Biology. 5: e92. PMID 17373858 DOI: 10.1371/Journal.Pbio.0050092  0.3
2007 Deflaun MF, Fredrickson JK, Dong H, Pfiffner SM, Onstott TC, Balkwill DL, Streger SH, Stackebrandt E, Knoessen S, van Heerden E. Isolation and characterization of a Geobacillus thermoleovorans strain from an ultra-deep South African gold mine. Systematic and Applied Microbiology. 30: 152-64. PMID 16709445 DOI: 10.1016/J.Syapm.2006.04.003  0.317
2006 Liu C, Jeon BH, Zachara JM, Wang Z, Dohnalkova A, Fredrickson JK. Kinetics of microbial reduction of Solid phase U(VI). Environmental Science & Technology. 40: 6290-6. PMID 17120555 DOI: 10.1021/Es0608601  0.322
2006 Xiong Y, Shi L, Chen B, Mayer MU, Lower BH, Londer Y, Bose S, Hochella MF, Fredrickson JK, Squier TC. High-affinity binding and direct electron transfer to solid metals by the Shewanella oneidensis MR-1 outer membrane c-type cytochrome OmcA. Journal of the American Chemical Society. 128: 13978-9. PMID 17061851 DOI: 10.1021/Ja063526D  0.31
2006 Gao H, Obraztova A, Stewart N, Popa R, Fredrickson JK, Tiedje JM, Nealson KH, Zhou J. Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean. International Journal of Systematic and Evolutionary Microbiology. 56: 1911-6. PMID 16902030 DOI: 10.1099/Ijs.0.64354-0  0.3
2006 Marshall MJ, Beliaev AS, Dohnalkova AC, Kennedy DW, Shi L, Wang Z, Boyanov MI, Lai B, Kemner KM, McLean JS, Reed SB, Culley DE, Bailey VL, Simonson CJ, Saffarini DA, ... ... Fredrickson JK, et al. c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensis. Plos Biology. 4: e268. PMID 16875436 DOI: 10.1371/Journal.Pbio.0040268  0.337
2006 Brim H, Osborne JP, Kostandarithes HM, Fredrickson JK, Wackett LP, Daly MJ. Deinococcus radiodurans engineered for complete toluene degradation facilitates Cr(VI) reduction. Microbiology (Reading, England). 152: 2469-77. PMID 16849809 DOI: 10.1099/Mic.0.29009-0  0.345
2006 Gorby YA, Yanina S, McLean JS, Rosso KM, Moyles D, Dohnalkova A, Beveridge TJ, Chang IS, Kim BH, Kim KS, Culley DE, Reed SB, Romine MF, Saffarini DA, Hill EA, ... ... Fredrickson JK, et al. Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms. Proceedings of the National Academy of Sciences of the United States of America. 103: 11358-63. PMID 16849424 DOI: 10.1073/Pnas.0604517103  0.354
2006 Shi L, Chen B, Wang Z, Elias DA, Mayer MU, Gorby YA, Ni S, Lower BH, Kennedy DW, Wunschel DS, Mottaz HM, Marshall MJ, Hill EA, Beliaev AS, Zachara JM, ... Fredrickson JK, et al. Isolation of a high-affinity functional protein complex between OmcA and MtrC: Two outer membrane decaheme c-type cytochromes of Shewanella oneidensis MR-1. Journal of Bacteriology. 188: 4705-14. PMID 16788180 DOI: 10.1128/Jb.01966-05  0.339
2006 Roh Y, Gao H, Vali H, Kennedy DW, Yang ZK, Gao W, Dohnalkova AC, Stapleton RD, Moon JW, Phelps TJ, Fredrickson JK, Zhou J. Metal reduction and iron biomineralization by a psychrotolerant Fe(III)-reducing bacterium, Shewanella sp. strain PV-4. Applied and Environmental Microbiology. 72: 3236-44. PMID 16672462 DOI: 10.1128/Aem.72.5.3236-3244.2006  0.345
2006 Kovacik WP, Takai K, Mormile MR, McKinley JP, Brockman FJ, Fredrickson JK, Holben WE. Molecular analysis of deep subsurface Cretaceous rock indicates abundant Fe(III)- and S(zero)-reducing bacteria in a sulfate-rich environment. Environmental Microbiology. 8: 141-55. PMID 16343329 DOI: 10.1111/J.1462-2920.2005.00876.X  0.433
2006 Fredrickson JK, Balkwill DL. Geomicrobial Processes and Biodiversity in the Deep Terrestrial Subsurface Geomicrobiology Journal. 23: 345-356. DOI: 10.1080/01490450600875571  0.387
2006 Kukkadapu RK, Zachara JM, Fredrickson JK, McKinley JP, Kennedy DW, Smith SC, Dong H. Reductive biotransformation of Fe in shale–limestone saprolite containing Fe(III) oxides and Fe(II)/Fe(III) phyllosilicates Geochimica Et Cosmochimica Acta. 70: 3662-3676. DOI: 10.1016/J.Gca.2006.05.004  0.32
2005 Moser DP, Gihring TM, Brockman FJ, Fredrickson JK, Balkwill DL, Dollhopf ME, Lollar BS, Pratt LM, Boice E, Southam G, Wanger G, Baker BJ, Pfiffner SM, Lin LH, Onstott TC. Desulfotomaculum and Methanobacterium spp. dominate a 4- to 5-kilometer-deep fault. Applied and Environmental Microbiology. 71: 8773-83. PMID 16332873 DOI: 10.1128/Aem.71.12.8773-8783.2005  0.406
2005 Beliaev AS, Klingeman DM, Klappenbach JA, Wu L, Romine MF, Tiedje JM, Nealson KH, Fredrickson JK, Zhou J. Global transcriptome analysis of Shewanella oneidensis MR-1 exposed to different terminal electron acceptors. Journal of Bacteriology. 187: 7138-45. PMID 16199584 DOI: 10.1128/Jb.187.20.7138-7145.2005  0.304
2005 Fredrickson JK, Romine MF. Genome-assisted analysis of dissimilatory metal-reducing bacteria. Current Opinion in Biotechnology. 16: 269-74. PMID 15961027 DOI: 10.1016/J.Copbio.2005.04.001  0.318
2005 Majors PD, McLean JS, Pinchuk GE, Fredrickson JK, Gorby YA, Minard KR, Wind RA. NMR methods for in situ biofilm metabolism studies. Journal of Microbiological Methods. 62: 337-44. PMID 15936835 DOI: 10.1016/J.Mimet.2005.04.017  0.316
2005 Fredrickson JK. Between a Rock and a Hard Place: Geomicrobial Electron Transfer Environmental Microbiology. 7: 475-476. PMID 15816916 DOI: 10.1111/J.1462-2920.2005.803_4.X  0.368
2005 Kolker E, Picone AF, Galperin MY, Romine MF, Higdon R, Makarova KS, Kolker N, Anderson GA, Qiu X, Auberry KJ, Babnigg G, Beliaev AS, Edlefsen P, Elias DA, Gorby YA, ... ... Fredrickson JK, et al. Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. Proceedings of the National Academy of Sciences of the United States of America. 102: 2099-104. PMID 15684069 DOI: 10.1073/Pnas.0409111102  0.308
2005 DiChristina TJ, Fredrickson JK, Zachara JM. Enzymology of electron transport: Energy generation with geochemical consequences Reviews in Mineralogy and Geochemistry. 59: 27-52. DOI: 10.2138/Rmg.2005.59.3  0.37
2005 Kukkadapu RK, Zachara JM, Fredrickson JK, Kennedy DW, Dohnalkova AC, McCready DE. Ferrous hydroxy carbonate is a stable transformation product of biogenic magnetite American Mineralogist. 90: 510-515. DOI: 10.2138/Am.2005.1727  0.338
2004 Fredrickson JK, Zachara JM, Balkwill DL, Kennedy D, Li SM, Kostandarithes HM, Daly MJ, Romine MF, Brockman FJ. Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the hanford site, washington state. Applied and Environmental Microbiology. 70: 4230-41. PMID 15240306 DOI: 10.1128/Aem.70.7.4230-4241.2004  0.333
2004 Balkwill DL, Kieft TL, Tsukuda T, Kostandarithes HM, Onstott TC, Macnaughton S, Bownas J, Fredrickson JK. Identification of iron-reducing Thermus strains as Thermus scotoductus. Extremophiles : Life Under Extreme Conditions. 8: 37-44. PMID 15064988 DOI: 10.1007/S00792-003-0357-0  0.314
2004 Lehman RM, O'Connell SP, Banta A, Fredrickson JK, Reysenbach AL, Kieft TL, Colwell FS. Microbiological comparison of core and groundwater samples collected from a fractured basalt aquifer with that of dialysis chambers incubated in Situ Geomicrobiology Journal. 21: 169-182. DOI: 10.1080/01490450490275848  0.334
2004 Fredrickson JK, Zachara JM, Kennedy DW, Kukkadapu RK, McKinley JP, Heald SM, Liu C, Plymale AE. Reduction of TcO4- by sediment-associated biogenic Fe(II) Geochimica Et Cosmochimica Acta. 68: 3171-3187. DOI: 10.1016/J.Gca.2003.10.024  0.323
2004 Zachara JM, Kukkadapu RK, Gassman PL, Dohnalkova A, Fredrickson JK, Anderson T. Biogeochemical transformation of Fe minerals in a petroleum-contaminated aquifer Geochimica Et Cosmochimica Acta. 68: 1791-1805. DOI: 10.1016/J.Gca.2003.09.022  0.335
2003 Moser DP, Fredrickson JK, Geist DR, Arntzen EV, Peacock AD, Li SMW, Spadoni T, McKinley JP. Biogeochemical Processes and Microbial Characteristics across Groundwater-Surface Water Boundaries of the Hanford Reach of the Columbia River Environmental Science and Technology. 37: 5127-5134. PMID 14655698 DOI: 10.1021/Es034457V  0.368
2003 Onstott TC, Moser DP, Pfiffner SM, Fredrickson JK, Brockman FJ, Phelps TJ, White DC, Peacock A, Balkwill D, Hoover R, Krumholz LR, Borscik M, Kieft TL, Wilson R. Indigenous and contaminant microbes in ultradeep mines. Environmental Microbiology. 5: 1168-91. PMID 14641596 DOI: 10.1046/J.1462-2920.2003.00512.X  0.332
2003 Fredrickson JK, Kota S, Kukkadapu RK, Liu C, Zachara JM. Influence of electron donor/acceptor concentrations on hydrous ferric oxide (HFO) bioreduction. Biodegradation. 14: 91-103. PMID 12877465 DOI: 10.1023/A:1024001207574  0.36
2003 Brooks SC, Fredrickson JK, Carroll SL, Kennedy DW, Zachara JM, Plymale AE, Kelly SD, Kemner KM, Fendorf S. Inhibition of bacterial U(VI) reduction by calcium. Environmental Science & Technology. 37: 1850-8. PMID 12775057 DOI: 10.1021/Es0210042  0.303
2003 Takai K, Mormile MR, McKinley JP, Brockman FJ, Holben WE, Kovacik WP, Fredrickson JK. Shifts in archaeal communities associated with lithological and geochemical variations in subsurface Cretaceous rock. Environmental Microbiology. 5: 309-20. PMID 12662178 DOI: 10.1046/J.1462-2920.2003.00421.X  0.383
2003 Baker BJ, Moser DP, MacGregor BJ, Fishbain S, Wagner M, Fry NK, Jackson B, Speolstra N, Loos S, Takai K, Lollar BS, Fredrickson J, Balkwill D, Onstott TC, Wimpee CF, et al. Related assemblages of sulphate-reducing bacteria associated with ultradeep gold mines of South Africa and deep basalt aquifers of Washington State. Environmental Microbiology. 5: 267-77. PMID 12662174 DOI: 10.1046/J.1462-2920.2003.00408.X  0.334
2003 Moser DP, Onstott TC, Fredrickson JK, Brockman FJ, Balkwill DL, Drake GR, Pfiffner SM, White DC, Takai K, Pratt LM, Fong J, Sherwood Lollar B, Slater G, Phelps TJ, Spoelstra N, et al. Temporal shifts in the geochemistry and microbial community structure of an ultradeep mine borehole following isolation Geomicrobiology Journal. 20: 517-548. DOI: 10.1080/713851170  0.415
2003 Dong H, Kukkadapu RK, Fredrickson JK, Zachara JM, Kennedy DW, Kostandarithes HM. Microbial Reduction of Structural Fe(III) in Illite and Goethite Environmental Science & Technology. 37: 1268-1276. DOI: 10.1021/Es020919D  0.325
2003 Rosso KM, Zachara JM, Fredrickson JK, Gorby YA, Smith SC. Nonlocal bacterial electron transfer to hematite surfaces Geochimica Et Cosmochimica Acta. 67: 1081-1087. DOI: 10.1016/S0016-7037(02)00904-3  0.331
2002 Liu C, Gorby YA, Zachara JM, Fredrickson JK, Brown CF. Reduction kinetics of Fe(III), Co(III), U(VI), Cr(VI), and Tc(VII) in cultures of dissimilatory metal-reducing bacteria. Biotechnology and Bioengineering. 80: 637-49. PMID 12378605 DOI: 10.1002/Bit.10430  0.342
2002 Zachara JM, Kukkadapu RK, Fredrickson JK, Gorby YA, Smith SC. Biomineralization of Poorly Crystalline Fe(III) Oxides by Dissimilatory Metal Reducing Bacteria (DMRB) Geomicrobiology Journal. 19: 179-207. DOI: 10.1080/01490450252864271  0.351
2002 Rai D, Gorby YA, Fredrickson JK, Moore DA, Yui M. Reductive Dissolution of PuO2(am): The Effect of Fe(II) and Hydroquinone Journal of Solution Chemistry. 31: 433-453. DOI: 10.1023/A:1020200911842  0.317
2002 Fredrickson JK, Zachara JM, Kennedy DW, Liu C, Duff MC, Hunter DB, Dohnalkova A. Influence of Mn oxides on the reduction of uranium(VI) by the metal-reducing bacterium Shewanella putrefaciens Geochimica Et Cosmochimica Acta. 66: 3247-3262. DOI: 10.1016/S0016-7037(02)00928-6  0.313
2001 Takai K, Moser DP, DeFlaun M, Onstott TC, Fredrickson JK. Archaeal diversity in waters from deep South African gold mines. Applied and Environmental Microbiology. 67: 5750-60. PMID 11722932 DOI: 10.1128/Aem.67.21.5750-5760.2001  0.334
2001 Shi T, Fredrickson JK, Balkwill DL. Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurface Journal of Industrial Microbiology & Biotechnology. 26: 283-289. PMID 11494104 DOI: 10.1038/Sj.Jim.7000130  0.312
2001 Takai K, Moser DP, Onstott TC, Spoelstra N, Pfiffner SM, Dohnalkova A, Fredrickson JK. Alkaliphilus transvaalensis gen. nov., sp. nov., an extremely alkaliphilic bacterium isolated from a deep South African gold mine. International Journal of Systematic and Evolutionary Microbiology. 51: 1245-56. PMID 11491320 DOI: 10.1099/00207713-51-4-1245  0.343
2001 Liu C, Kota S, Zachara JM, Fredrickson JK, Brinkman CK. Kinetic analysis of the bacterial reduction of goethite. Environmental Science & Technology. 35: 2482-2490. PMID 11432552 DOI: 10.1021/Es001956C  0.329
2001 Fredrickson JK, Zachara JM, Kukkadapu RK, Gorby YA, Smith SC, Brown CF. Biotransformation of Ni-substituted hydrous ferric oxide by an Fe(III)-reducing bacterium. Environmental Science & Technology. 35: 703-12. PMID 11349281 DOI: 10.1021/Es001500V  0.327
2001 Balkwill D, Chen J, DeFlaun M, Dobbs F, Dong H, Fredrickson J, Fuller M, Green M, Ginn T, Griffin T, Holben W, Hubbard S, Johnson W, Long P, Mailloux B, et al. Breakthroughs in field-scale bacterial transport Eos, Transactions American Geophysical Union. 82: 417-417. DOI: 10.1029/01Eo00255  0.309
2001 Kukkadapu RK, Zachara JM, Smith SC, Fredrickson JK, Liu C. Dissimilatory bacterial reduction of Al-substituted goethite in subsurface sediments Geochimica Et Cosmochimica Acta. 65: 2913-2924. DOI: 10.1016/S0016-7037(01)00656-1  0.311
2001 Zachara JM, Fredrickson JK, Smith SC, Gassman PL. Solubilization of Fe(III) oxide-bound trace metals by a dissimilatory Fe(III) reducing bacterium Geochimica Et Cosmochimica Acta. 65: 75-93. DOI: 10.1016/S0016-7037(00)00500-7  0.339
2000 Fuller ME, Streger SH, Rothmel RK, Mailloux BJ, Hall JA, Onstott TC, Fredrickson JK, Balkwill DL, DeFlaun MF. Development of a vital fluorescent staining method for monitoring bacterial transport in subsurface environments. Applied and Environmental Microbiology. 66: 4486-96. PMID 11010903 DOI: 10.1128/Aem.66.10.4486-4496.2000  0.31
2000 Fredrickson JK. Microbial ecology update. Microbial Ecology. 40: 1-1. PMID 10977870 DOI: 10.1007/S002480000052  0.372
2000 Crocker FH, Fredrickson JK, White DC, Ringelberg DB, Balkwill DL. Phylogenetic and physiological diversity of Arthrobacter strains isolated from unconsolidated subsurface sediments Microbiology. 146: 1295-1310. PMID 10846209 DOI: 10.1099/00221287-146-6-1295  0.31
2000 Wildung RE, Gorby YA, Krupka KM, Hess NJ, Li SW, Plymale AE, McKinley JP, Fredrickson JK. Effect of Electron Donor and Solution Chemistry on Products of Dissimilatory Reduction of Technetium by Shewanella putrefaciens Applied and Environmental Microbiology. 66: 2451-2460. PMID 10831424 DOI: 10.1128/Aem.66.6.2451-2460.2000  0.371
2000 Fredrickson JK, Kostandarithes HM, Li SW, Plymale AE, Daly MJ. Reduction of Fe(III), Cr(VI), U(VI), and Tc(VII) by Deinococcus radiodurans R1 Applied and Environmental Microbiology. 66: 2006-2011. PMID 10788374 DOI: 10.1128/Aem.66.5.2006-2011.2000  0.331
2000 Zachara JM, Smith SC, Fredrickson JK. The effect of biogenic Fe(II) on the stability and sorption of Co(II)EDTA2− to goethite and a subsurface sediment Geochimica Et Cosmochimica Acta. 64: 1345-1362. DOI: 10.1016/S0016-7037(99)00427-5  0.321
2000 Fredrickson JK, Zachara JM, Kennedy DW, Duff MC, Gorby YA, Li SW, Krupka KM. Reduction of U(VI) in goethite (α-FeOOH) suspensions by a dissimilatory metal-reducing bacterium Geochimica Et Cosmochimica Acta. 64: 3085-3098. DOI: 10.1016/S0016-7037(00)00397-5  0.377
2000 Dong H, Fredrickson JK, Kennedy DW, Zachara JM, Kukkadapu RK, Onstott TC. Mineral transformation associated with the microbial reduction of magnetite Chemical Geology. 169: 299-318. DOI: 10.1016/S0009-2541(00)00210-2  0.373
1999 Romine MF, Fredrickson JK, Li S-W. Induction of aromatic catabolic activity in Sphingomonas aromaticivorans strain F199. Journal of Industrial Microbiology & Biotechnology. 23: 303-313. PMID 11423947 DOI: 10.1038/Sj.Jim.2900750  0.301
1999 Fredrickson JK, Balkwill DL, Romine MF, Shi T. Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp. Journal of Industrial Microbiology & Biotechnology. 23: 273-283. PMID 11423944 DOI: 10.1038/Sj.Jim.2900741  0.356
1999 Tobin KJ, Onstott TC, DeFlaun MF, Colwell FS, Fredrickson J. In situ imaging of microorganisms in geologic material. Journal of Microbiological Methods. 37: 201-13. PMID 10480264 DOI: 10.1016/S0167-7012(99)00044-5  0.32
1999 Dong H, Onstott TC, DeFlaun MF, Fuller ME, Gillespie KM, Fredrickson JK. Development of radiographic and microscopic techniques for the characterization of bacterial transport in intact sediment cores from Oyster, Virginia. Journal of Microbiological Methods. 37: 139-54. PMID 10445313 DOI: 10.1016/S0167-7012(99)00056-1  0.363
1999 Kieft TL, Fredrickson JK, Onstott TC, Gorby YA, Kostandarithes HM, Bailey TJ, Kennedy DW, Li SW, Plymale AE, Spadoni CM, Gray MS. Dissimilatory reduction of Fe(III) and other electron acceptors by a Thermus isolate. Applied and Environmental Microbiology. 65: 1214-21. PMID 10049886 DOI: 10.1128/Aem.65.3.1214-1221.1999  0.348
1999 Walvoord MA, Pegram P, Phillips FM, Person M, Kieft TL, Fredrickson JK, McKinley JP, Swenson JB. Groundwater flow and geochemistry in the southeastern San Juan Basin: Implications for microbial transport and activity Water Resources Research. 35: 1409-1424. DOI: 10.1029/1999Wr900017  0.322
1998 Brockman FJ, Li SW, Fredrickson JK, Ringelberg DB, Kieft TL, Spadoni CM, White DC, McKinley JP. Post-Sampling Changes in Microbial Community Composition and Activity in a Subsurface Paleosol Microbial Ecology. 36: 152-164. PMID 9688777 DOI: 10.1007/S002489900102  0.377
1998 Chandler DP, Brockman FJ, Bailey TJ, Fredrickson JK. Phylogenetic Diversity of Archaea and Bacteria in a Deep Subsurface Paleosol Microbial Ecology. 36: 37-50. PMID 9622563 DOI: 10.1007/S002489900091  0.343
1998 Zachara JM, Fredrickson JK, Li S, Kennedy DW, Smith SC, Gassman PL. Bacterial reduction of crystalline Fe3+ oxides in single phase suspensions and subsurface materials American Mineralogist. 83: 1426-1443. DOI: 10.2138/Am-1998-11-1232  0.311
1998 Urrutia MM, Roden EE, Fredrickson JK, Zachara JM. Microbial and surface chemistry controls on reduction of synthetic Fe(III) oxide minerals by the dissimilatory iron‐reducing bacteriumShewanella alga Geomicrobiology Journal. 15: 269-291. DOI: 10.1080/01490459809378083  0.32
1998 Fredrickson JK, Zachara JM, Kennedy DW, Dong H, Onstott TC, Hinman NW, Li SM. Biogenic iron mineralization accompanying the dissimilatory reduction of hydrous ferric oxide by a groundwater bacterium Geochimica Et Cosmochimica Acta. 62: 3239-3257. DOI: 10.1016/S0016-7037(98)00243-9  0.358
1997 Fry NK, Fredrickson JK, Fishbain S, Wagner M, Stahl DA. Population structure of microbial communities associated with two deep, anaerobic, alkaline aquifers Applied and Environmental Microbiology. 63: 1498-1504. PMID 9097447 DOI: 10.1128/Aem.63.4.1498-1504.1997  0.372
1997 Fredrickson JK. A New Era for Microbial Ecology Microbial Ecology. 33: 1-1. PMID 9039759 DOI: 10.1007/S002489900001  0.307
1997 Balkwill DL, Drake GR, Reeves RH, Fredrickson JK, White DC, Ringelberg DB, Chandler DP, Romine MF, Kennedy DW, Spadoni CM. Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov. International Journal of Systematic Bacteriology. 47: 191-201. PMID 8995822 DOI: 10.1099/00207713-47-1-191  0.308
1997 Colwell FS, Onstott TC, Delwiche ME, Chandler D, Fredrickson JK, Yao QJ, McKinley JP, Boone DR, Griffiths R, Phelps TJ, Ringelberg D, White DC, LaFreniere L, Balkwill D, Lehman RM, et al. Microorganisms from deep, high temperature sandstones: Constraints on microbial colonization Fems Microbiology Reviews. 20: 425-435. DOI: 10.1111/J.1574-6976.1997.Tb00327.X  0.381
1997 Chandler DP, Brockman FJ, Fredrickson JK. Use of 16S rDNA clone libraries to study changes in a microbial community resulting from ex situ perturbation of a subsurface sediment Fems Microbiology Reviews. 20: 217-230. DOI: 10.1111/J.1574-6976.1997.Tb00310.X  0.373
1997 Chandler DP, Li S, Spadoni CM, Drake GR, Balkwill DL, Fredrickson JK, Brockman FJ. A molecular comparison of culturable aerobic heterotrophic bacteria and 16S rDNA clones derived from a deep subsurface sediment Fems Microbiology Ecology. 23: 131-144. DOI: 10.1111/J.1574-6941.1997.Tb00397.X  0.338
1997 Fredrickson JK, McKinley JP, Bjornstad BN, Long PE, Ringelberg DB, White DC, Krumholz LR, Suflita JM, Colwell FS, Lehman RM, Phelps TJ, Onstott TC. Pore‐size constraints on the activity and survival of subsurface bacteria in a late cretaceous shale‐sandstone sequence, northwestern New Mexico Geomicrobiology Journal. 14: 183-202. DOI: 10.1080/01490459709378043  0.342
1997 McKinley JP, Stevens TO, Fredrickson JK, Zachara JM, Colwell FS, Wagnon KB, Smith SC, Rawson SA, Bjornstad BN. Biogeochemistry of anaerobic lacustrine and paleosol sediments within an aerobic unconfined aquifer Geomicrobiology Journal. 14: 23-39. DOI: 10.1080/01490459709378031  0.357
1996 Fredrickson JK, Gorby YA. Environmental processes mediated by iron-reducing bacteria Current Opinion in Biotechnology. 7: 287-294. PMID 8785432 DOI: 10.1016/S0958-1669(96)80032-2  0.318
1995 Kieft TL, Fredrickson JK, McKinley JP, Bjornstad BN, Rawson SA, Phelps TJ, Brockman FJ, Pfiffner SM. Microbiological Comparisons within and across Contiguous Lacustrine, Paleosol, and Fluvial Subsurface Sediments Applied and Environmental Microbiology. 61: 749-757. PMID 16534940 DOI: 10.1128/Aem.61.2.749-757.1995  0.341
1995 Fredrickson JK, Balkwill DL, Drake GR, Romine MF, Ringelberg DB, White DC. Aromatic-degrading Sphingomonas isolates from the deep subsurface. Applied and Environmental Microbiology. 61: 1917-22. PMID 7544095 DOI: 10.1128/Aem.61.5.1917-1922.1995  0.313
1995 FREDRICKSON JK, MCKINLEY JP, NIERZWICKI-BAUER SA, WHITE DC, RINGELBERG DB, RAWSON SA, LI S, BROCKMAN FJ, BJORNSTAD BN. Microbial community structure and biogeochemistry of Miocene subsurface sediments: implications for long-term microbial survival Molecular Ecology. 4: 619-626. DOI: 10.1111/J.1365-294X.1995.Tb00262.X  0.421
1995 Fredrickson JK, Li SW, Brockman FJ, Haldeman DL, Amy PS, Balkwill DL. Time-dependent changes in viable numbers and activities of aerobic heterotrophic bacteria in subsurface samples Journal of Microbiological Methods. 21: 253-265. DOI: 10.1016/0167-7012(94)00053-A  0.319
1993 Stevens TO, McKinley JP, Fredrickson JK. Bacteria associated with deep, alkaline, anaerobic groundwaters in Southeast Washington. Microbial Ecology. 25: 35-50. PMID 24189705 DOI: 10.1007/Bf00182128  0.37
1993 Kieft TL, Amy PS, Brockman FJ, Fredrickson JK, Bjornstad BN, Rosacker LL. Microbial abundance and activities in relation to water potential in the vadose zones of arid and semiarid sites Microbial Ecology. 26: 59-78. DOI: 10.1007/Bf00166030  0.313
1992 Brockman FJ, Kieft TL, Fredrickson JK, Bjornstad BN, Li SW, Spangenburg W, Long PE. Microbiology of vadose zone paleosols in south-central Washington State. Microbial Ecology. 23: 279-301. PMID 24192936 DOI: 10.1007/Bf00164101  0.352
1992 Murphy EM, Schramke JA, Fredrickson JK, Bledsoe HW, Francis AJ, Sklarew DS, Linehan JC. The influence of microbial activity and sedimentary organic carbon on the isotope geochemistry of the Middendorf Aquifer Water Resources Research. 28: 723-740. DOI: 10.1029/91Wr02678  0.384
1991 Fredrickson JK, Balkwill DL, Zachara JM, Li SM, Brockman FJ, Simmons MA. Physiological diversity and distributions of heterotrophic bacteria in deep cretaceous sediments of the atlantic coastal plain. Applied and Environmental Microbiology. 57: 402-11. PMID 16348407 DOI: 10.1128/Aem.57.2.402-411.1991  0.363
1990 Fredrickson JK, Bolton H, Mcfadden KM, Li SW, Voris PV, Bentjen SA. Evaluation of intact soil‐core microcosms for determining potential impacts on nutrient dynamics by genetically engineered microorganisms Environmental Toxicology and Chemistry. 9: 551-558. DOI: 10.1002/Etc.5620090503  0.333
1989 Balkwill DL, Fredrickson JK, Thomas JM. Vertical and horizontal variations in the physiological diversity of the aerobic chemoheterotrophic bacterial microflora in deep southeast coastal plain subsurface sediments. Applied and Environmental Microbiology. 55: 1058-1065. PMID 16347902 DOI: 10.1128/Aem.55.5.1058-1065.1989  0.346
1989 Brockman FJ, Denovan BA, Hicks RJ, Fredrickson JK. Isolation and characterization of quinoline-degrading bacteria from subsurface sediments. Applied and Environmental Microbiology. 55: 1029-1032. PMID 2729977 DOI: 10.1128/Aem.55.4.1029-1032.1989  0.362
1989 Hicks RJ, Fredrickson JK. Aerobic metabolic potential of microbial populations indigenous to deep subsurface environments Geomicrobiology Journal. 7: 67-78. DOI: 10.1080/01490458909377850  0.356
1989 Fredrickson JK, Garland TR, Hicks RJ, Thomas JM, Li SW, McFadden KM. Lithotrophic and Heterotrophic Bacteria in Deep Subsurface Sediments and Their Relation to Sediment Properties Geomicrobiology Journal. 7: 53-66. DOI: 10.1080/01490458909377849  0.341
Low-probability matches (unlikely to be authored by this person)
1988 Fredrickson JK, Hicks RJ, Li SW, Brockman FJ. Plasmid incidence in bacteria from deep subsurface sediments. Applied and Environmental Microbiology. 54: 2916-2923. PMID 16347789 DOI: 10.1128/Aem.54.12.2916-2923.1988  0.3
2005 Ghosal D, Omelchenko MV, Gaidamakova EK, Matrosova VY, Vasilenko A, Venkateswaran A, Zhai M, Kostandarithes HM, Brim H, Makarova KS, Wackett LP, Fredrickson JK, Daly MJ. How radiation kills cells: survival of Deinococcus radiodurans and Shewanella oneidensis under oxidative stress. Fems Microbiology Reviews. 29: 361-75. PMID 15808748 DOI: 10.1016/J.Femsre.2004.12.007  0.3
2010 Gao H, Barua S, Liang Y, Wu L, Dong Y, Reed S, Chen J, Culley D, Kennedy D, Yang Y, He Z, Nealson KH, Fredrickson JK, Tiedje JM, Romine M, et al. Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration. Microbial Biotechnology. 3: 455-66. PMID 21255343 DOI: 10.1111/J.1751-7915.2010.00181.X  0.299
1991 Fredrickson JK, Brockman FJ, Workman DJ, Li SW, Stevens TO. Isolation and characterization of a subsurface bacterium capable of growth on toluene, naphthalene, and other aromatic compounds. Applied and Environmental Microbiology. 57: 796-803. PMID 16348445 DOI: 10.1128/Aem.57.3.796-803.1991  0.299
2011 Dohnalkova AC, Marshall MJ, Arey BW, Williams KH, Buck EC, Fredrickson JK. Imaging hydrated microbial extracellular polymers: comparative analysis by electron microscopy. Applied and Environmental Microbiology. 77: 1254-62. PMID 21169451 DOI: 10.1128/Aem.02001-10  0.298
2000 Brim H, McFarlan SC, Fredrickson JK, Minton KW, Zhai M, Wackett LP, Daly MJ. Engineering Deinococcus radiodurans for metal remediation in radioactive mixed waste environments Nature Biotechnology. 18: 85-90. PMID 10625398 DOI: 10.1038/71986  0.298
1993 Fredrickson JK, Brockman FJ, Bjornstad BN, Long PE, Li SW, McKinley JP, Wright JV, Conca JL, Kieft TL, Balkwill DL. Microbiological characteristics of pristine and contaminated deep vadose sediments from an arid region Geomicrobiology Journal. 11: 95-107. DOI: 10.1080/01490459309377938  0.297
2015 Liu Y, Fredrickson JK, Sadler NC, Nandhikonda P, Smith RD, Wright AT. Advancing understanding of microbial bioenergy conversion processes by activity-based protein profiling. Biotechnology For Biofuels. 8: 156. PMID 26413155 DOI: 10.1186/S13068-015-0343-7  0.297
2012 Ahmed B, Cao B, Mishra B, Boyanov MI, Kemner KM, Fredrickson JK, Beyenal H. Immobilization of U(VI) from oxic groundwater by Hanford 300 Area sediments and effects of Columbia River water. Water Research. 46: 3989-98. PMID 22683408 DOI: 10.1016/J.Watres.2012.05.027  0.296
2008 Wang Z, Wagnon KB, Ainsworth CC, Liu C, Rosso KM, Fredrickson JK. A spectroscopic study of the effect of ligand complexation on the reduction of uranium(VI) by anthraquinone-2,6-disulfonate (AH2DS) Radiochimica Acta. 96: 599-605. DOI: 10.1524/Ract.2008.1542  0.294
1997 Chandler DP, Fredrickson JK, Brockman FJ. Effect of PCR template concentration on the composition and distribution of total community 16S rDNA clone libraries. Molecular Ecology. 6: 475-82. PMID 9161015 DOI: 10.1046/J.1365-294X.1997.00205.X  0.293
2007 Biju V, Pan D, Gorby YA, Fredrickson J, McLean J, Saffarini D, Lu HP. Combined spectroscopic and topographic characterization of nanoscale domains and their distributions of a redox protein on bacterial cell surfaces. Langmuir : the Acs Journal of Surfaces and Colloids. 23: 1333-8. PMID 17241055 DOI: 10.1021/La061343Z  0.293
2013 Shi Z, Zachara JM, Wang Z, Shi L, Fredrickson JK. Reductive dissolution of goethite and hematite by reduced flavins Geochimica Et Cosmochimica Acta. 121: 139-154. DOI: 10.1016/J.Gca.2013.05.039  0.293
2009 Marshall MJ, Dohnalkova AC, Kennedy DW, Plymale AE, Arey BW, Beliaev AS, Fredrickson JK. Advances in electron microscopy for studying the microorganism-mediated reduction of radionuclides in the subsurface Microscopy and Microanalysis. 15: 92-93. DOI: 10.1017/S1431927609099292  0.291
2004 Kukkadapu RK, Zachara JM, Fredrickson JK, Kennedy DW. Biotransformation of two-line silica-ferrihydrite by a dissimilatory Fe(III)-reducing bacterium: Formation of carbonate green rust in the presence of phosphate Geochimica Et Cosmochimica Acta. 68: 2799-2814. DOI: 10.1016/J.Gca.2003.12.024  0.29
2010 Rodionov DA, Yang C, Li X, Rodionova IA, Wang Y, Obraztsova AY, Zagnitko OP, Overbeek R, Romine MF, Reed S, Fredrickson JK, Nealson KH, Osterman AL. Genomic encyclopedia of sugar utilization pathways in the Shewanella genus. Bmc Genomics. 11: 494. PMID 20836887 DOI: 10.1186/1471-2164-11-494  0.29
2013 Song HS, Ramkrishna D, Pinchuk GE, Beliaev AS, Konopka AE, Fredrickson JK. Dynamic modeling of aerobic growth of Shewanella oneidensis. Predicting triauxic growth, flux distributions, and energy requirement for growth Metabolic Engineering. 15: 25-33. PMID 23022551 DOI: 10.1016/J.Ymben.2012.08.004  0.289
2005 Elias DA, Monroe ME, Marshall MJ, Romine MF, Belieav AS, Fredrickson JK, Anderson GA, Smith RD, Lipton MS. Global detection and characterization of hypothetical proteins in Shewanella oneidensis MR-1 using LC-MS based proteomics. Proteomics. 5: 3120-30. PMID 16038018 DOI: 10.1002/Pmic.200401140  0.287
1999 Romine MF, Stillwell LC, Wong KK, Thurston SJ, Sisk EC, Sensen C, Gaasterland T, Fredrickson JK, Saffer JD. Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199 Journal of Bacteriology. 181: 1585-1602. PMID 10049392 DOI: 10.1128/Jb.181.5.1585-1602.1999  0.287
2012 White GF, Shi Z, Shi L, Dohnalkova AC, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA. Development of a proteoliposome model to probe transmembrane electron-transfer reactions. Biochemical Society Transactions. 40: 1257-60. PMID 23176464 DOI: 10.1042/Bst20120116  0.286
2003 Brim H, Venkateswaran A, Kostandarithes HM, Fredrickson JK, Daly MJ. Engineering Deinococcus geothermalis for bioremediation of high-temperature radioactive waste environments. Applied and Environmental Microbiology. 69: 4575-82. PMID 12902245 DOI: 10.1128/Aem.69.8.4575-4582.2003  0.286
2008 Shi L, Deng S, Marshall MJ, Wang Z, Kennedy DW, Dohnalkova AC, Mottaz HM, Hill EA, Gorby YA, Beliaev AS, Richardson DJ, Zachara JM, Fredrickson JK. Direct involvement of type II secretion system in extracellular translocation of Shewanella oneidensis outer membrane cytochromes MtrC and OmcA. Journal of Bacteriology. 190: 5512-6. PMID 18502849 DOI: 10.1128/Jb.00514-08  0.286
2004 Rosso KM, Smith DMA, Wang Z, Ainsworth CC, Fredrickson JK. Self-Exchange Electron Transfer Kinetics and Reduction Potentials for Anthraquinone Disulfonate Journal of Physical Chemistry A. 108: 3292-3303. DOI: 10.1021/Jp037134U  0.284
2011 Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, et al. Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus. Bmc Genomics. 12: S3. PMID 21810205 DOI: 10.1186/1471-2164-12-S1-S3  0.283
2011 Marshall M, Dohnalkova A, Kennedy D, Arey B, Fredrickson J. High-Resolution Imaging to Characterize the Structure and Biogeochemical Function of Microbial Biofilms Microscopy and Microanalysis. 17: 260-261. DOI: 10.1017/S1431927611002170  0.282
2008 Dohnalkova A, Marshall MJ, Fredrickson JK. Cryo TEM: A new perspective to the biogeochemical associations of bacteria and minerals Microscopy and Microanalysis. 14: 1298-1299. DOI: 10.1017/S1431927608082536  0.281
1994 Bjornstad BN, McKinley JP, Stevens TO, Rawson SA, Fredrickson JK, Long PE. Generation of Hydrogen Gas as a Result of Drilling Within the Saturated Zone Ground Water Monitoring and Remediation. 14: 140-147. DOI: 10.1111/J.1745-6592.1994.Tb00492.X  0.281
2001 Dohnalkova A, Gorby YA, Mclean JS, Fredrickson JK, Kennedy DA. Biogenic Mineral Formation by Iron Reducing Bacteria Microscopy and Microanalysis. 7: 756-757. DOI: 10.1017/S1431927600029858  0.279
2002 Lipton MS, Pasa-Tolic' L, Anderson GA, Anderson DJ, Auberry DL, Battista JR, Daly MJ, Fredrickson J, Hixson KK, Kostandarithes H, Masselon C, Markillie LM, Moore RJ, Romine MF, Shen Y, et al. Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags. Proceedings of the National Academy of Sciences of the United States of America. 99: 11049-54. PMID 12177431 DOI: 10.1073/Pnas.172170199  0.277
1991 Bolton H, Fredrickson JK, Thomas JM, Li SM, Workman DJ, Bentjen SA, Smith JL. Field calibration of soil-core microcosms: Ecosystem structural and functional comparisons. Microbial Ecology. 21: 175-89. PMID 24194209 DOI: 10.1007/Bf02539152  0.276
2012 Melnicki MR, Pinchuk GE, Hill EA, Kucek LA, Fredrickson JK, Konopka A, Beliaev AS. Sustained H(2) production driven by photosynthetic water splitting in a unicellular cyanobacterium. Mbio. 3: e00197-12. PMID 22872781 DOI: 10.1128/Mbio.00197-12  0.274
2007 Makarova KS, Omelchenko MV, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Lapidus A, Copeland A, Kim E, Land M, Mavrommatis K, Pitluck S, Richardson PM, Detter C, Brettin T, ... ... Fredrickson JK, et al. Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks. Plos One. 2: e955. PMID 17895995 DOI: 10.1371/Journal.Pone.0000955  0.274
1993 Crawford DL, Doyle JD, Wang Z, Hendricks CW, Bentjen SA, Bolton H, Fredrickson JK, Bleakley BH. Effects of a lignin peroxidase-expressing recombinant, Streptomyces lividans TK23.1, on biogeochemical cycling and the numbers and activities of microorganisms in soil. Applied and Environmental Microbiology. 59: 508-18. PMID 8434915 DOI: 10.1128/Aem.59.2.508-518.1993  0.273
2011 Shi L, Belchik SM, Plymale AE, Heald S, Dohnalkova AC, Sybirna K, Bottin H, Squier TC, Zachara JM, Fredrickson JK. Purification and characterization of the [NiFe]-hydrogenase of Shewanella oneidensis MR-1. Applied and Environmental Microbiology. 77: 5584-90. PMID 21724888 DOI: 10.1128/Aem.00260-11  0.273
2011 Belchik SM, Kennedy DW, Dohnalkova AC, Wang Y, Sevinc PC, Wu H, Lin Y, Lu HP, Fredrickson JK, Shi L. Extracellular reduction of hexavalent chromium by cytochromes MtrC and OmcA of Shewanella oneidensis MR-1. Applied and Environmental Microbiology. 77: 4035-41. PMID 21498755 DOI: 10.1128/Aem.02463-10  0.272
2011 Zhang H, Yang F, Qian WJ, Brown RN, Wang Y, Merkley ED, Merkley EE, Park JH, Monroe ME, Purvine SO, Moore RJ, Shi L, Fredrickson JK, PaÅ¡a-Tolić L, Smith RD, et al. Identification of c-type heme-containing peptides using nonactivated immobilized metal affinity chromatography resin enrichment and higher-energy collisional dissociation. Analytical Chemistry. 83: 7260-8. PMID 21740036 DOI: 10.1021/Ac2000829  0.272
1995 Ni S, Fredrickson JK, Xun L. Purification and characterization of a novel 3-chlorobenzoate-reductive dehalogenase from the cytoplasmic membrane of Desulfomonile tiedjei DCB-1 Journal of Bacteriology. 177: 5135-5139. PMID 7665493 DOI: 10.1128/Jb.177.17.5135-5139.1995  0.272
2009 Jiang S, Lee JH, Kim MG, Myung NV, Fredrickson JK, Sadowsky MJ, Hur HG. Biogenic formation of As-S nanotubes by diverse Shewanella strains. Applied and Environmental Microbiology. 75: 6896-9. PMID 19717628 DOI: 10.1128/Aem.00450-09  0.271
2012 Breuer M, Zarzycki P, Shi L, Clarke TA, Edwards MJ, Butt JN, Richardson DJ, Fredrickson JK, Zachara JM, Blumberger J, Rosso KM. Molecular structure and free energy landscape for electron transport in the decahaem cytochrome MtrF. Biochemical Society Transactions. 40: 1198-203. PMID 23176454 DOI: 10.1042/Bst20120139  0.27
1995 Fletcher M, Fredrickson JK. Joint editorial: To mark a change in editorship of microbial ecology. Microbial Ecology. 30: 1-2. PMID 24185408 DOI: 10.1007/Bf00184509  0.268
2008 Zhang H, Tang X, Munske GR, Zakharova N, Yang L, Zheng C, Wolff MA, Tolic N, Anderson GA, Shi L, Marshall MJ, Fredrickson JK, Bruce JE. In vivo identification of the outer membrane protein OmcA-MtrC interaction network in Shewanella oneidensis MR-1 cells using novel hydrophobic chemical cross-linkers. Journal of Proteome Research. 7: 1712-20. PMID 18303833 DOI: 10.1021/Pr7007658  0.266
2005 Dohnalkova A, Marshall MJ, Kennedy DW, Gorby YA, Shi L, Beliaev A, Apkarian R, Fredrickson JK. The Role of Bacterial Exopolymers in Metal Sorption and Reduction Microscopy and Microanalysis. 11: 116-117. DOI: 10.1017/S1431927605506688  0.266
2012 Edwards MJ, Fredrickson JK, Zachara JM, Richardson DJ, Clarke TA. Analysis of structural MtrC models based on homology with the crystal structure of MtrF. Biochemical Society Transactions. 40: 1181-5. PMID 23176451 DOI: 10.1042/Bst20120132  0.266
2002 Liu C, Zachara JM, Fredrickson JK, Kennedy DW, Dohnalkova A. Modeling the inhibition of the bacteral reduction of U(VI) by beta-MnO2(s). Environmental Science & Technology. 36: 1452-9. PMID 11999050 DOI: 10.1021/Es011159U  0.266
2006 Fang R, Elias DA, Monroe ME, Shen Y, McIntosh M, Wang P, Goddard CD, Callister SJ, Moore RJ, Gorby YA, Adkins JN, Fredrickson JK, Lipton MS, Smith RD. Differential label-free quantitative proteomic analysis of Shewanella oneidensis cultured under aerobic and suboxic conditions by accurate mass and time tag approach. Molecular & Cellular Proteomics : McP. 5: 714-25. PMID 16401633 DOI: 10.1074/Mcp.M500301-Mcp200  0.266
1989 Bentjen SA, Fredrickson JK, Voris PV, Li SW. Intact soil-core microcosms for evaluating the fate and ecological impact of the release of genetically engineered microorganisms. Applied and Environmental Microbiology. 55: 198-202. PMID 16347823 DOI: 10.1128/Aem.55.1.198-202.1989  0.265
1991 Brockman FJ, Forse LB, Bezdicek DF, Fredrickson JK. Impairment of transposon-induced mutants of Rhizobium leguminosarum Soil Biology & Biochemistry. 23: 861-867. DOI: 10.1016/0038-0717(91)90098-5  0.264
2006 Elias DA, Monroe ME, Smith RD, Fredrickson JK, Lipton MS. Confirmation of the expression of a large set of conserved hypothetical proteins in Shewanella oneidensis MR-1. Journal of Microbiological Methods. 66: 223-33. PMID 16417935 DOI: 10.1016/J.Mimet.2005.11.009  0.263
2010 Zhang H, Brown RN, Qian WJ, Monroe ME, Purvine SO, Moore RJ, Gritsenko MA, Shi L, Romine MF, Fredrickson JK, Pasa-Tolić L, Smith RD, Lipton MS. Quantitative analysis of cell surface membrane proteins using membrane-impermeable chemical probe coupled with 18O labeling. Journal of Proteome Research. 9: 2160-9. PMID 20380418 DOI: 10.1021/Pr9009113  0.262
1992 Truex MJ, Brockman FJ, Johnstone DL, Fredrickson JK. Effect of starvation on induction of quinoline degradation for a subsurface bacterium in a continuous-flow column. Applied and Environmental Microbiology. 58: 2386-2392. PMID 16348744 DOI: 10.1128/Aem.58.8.2386-2392.1992  0.259
2010 Renslow RS, Majors PD, McLean JS, Fredrickson JK, Ahmed B, Beyenal H. In situ effective diffusion coefficient profiles in live biofilms using pulsed-field gradient nuclear magnetic resonance. Biotechnology and Bioengineering. 106: 928-37. PMID 20589671 DOI: 10.1002/Bit.22755  0.259
2005 Kelly SD, Kemner KM, Brooks SC, Fredrickson JK, Carroll SL, Kennedy DW, Zachara JM, Plymale AE, Fendorf S. Ca-UO2-CO3 complexation - Implications for bioremediation of U(VI) Physica Scripta T. 915-917. DOI: 10.1238/Physica.Topical.115A00915  0.259
2018 Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J. Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology. Nature Communications. 9: 1034. PMID 29515121 DOI: 10.1038/S41467-018-03572-7  0.258
2011 Lee JH, Kennedy DW, Dohnalkova A, Moore DA, Nachimuthu P, Reed SB, Fredrickson JK. Manganese sulfide formation via concomitant microbial manganese oxide and thiosulfate reduction. Environmental Microbiology. 13: 3275-88. PMID 21951417 DOI: 10.1111/j.1462-2920.2011.02587.x  0.258
1987 Pyne JW, Stewart DL, Fredrickson J, Wilson BW. Solubilization of Leonardite by an Extracellular Fraction from Coriolus versicolor. Applied and Environmental Microbiology. 53: 2844-8. PMID 16347501 DOI: 10.1128/Aem.53.12.2844-2848.1987  0.258
1988 Fredrickson JK, Bezdicek DF, Brockman FJ, Li SW. Enumeration of Tn5 mutant bacteria in soil by using a most-probable-number-DNA hybridization procedure and antibiotic resistance Applied and Environmental Microbiology. 54: 446-453. PMID 2833161 DOI: 10.1128/Aem.54.2.446-453.1988  0.258
2013 Rodionova IA, Li X, Thiel V, Stolyar S, Stanton K, Fredrickson JK, Bryant DA, Osterman AL, Best AA, Rodionov DA. Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria. Frontiers in Microbiology. 4: 407. PMID 24391637 DOI: 10.3389/Fmicb.2013.00407  0.257
1991 Bolton H, Fredrickson JK, Bentjen SA, Workman DJ, Li SM, Thomas JM. Field calibration of soil-core microcosms: Fate of a genetically altered rhizobacterium. Microbial Ecology. 21: 163-73. PMID 24194208 DOI: 10.1007/Bf02539151  0.257
2014 Wilkins MJ, Kennedy DW, Castelle CJ, Field EK, Stepanauskas R, Fredrickson JK, Konopka AE. Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer. Microbiology (Reading, England). 160: 362-72. PMID 24324032 DOI: 10.1099/mic.0.073965-0  0.257
2006 Harvey SD, Mong GM, Ozanich RM, McLean JS, Goodwin SM, Valentine NB, Fredrickson JK. Preparation and evaluation of spore-specific affinity-augmented bio-imprinted beads. Analytical and Bioanalytical Chemistry. 386: 211-9. PMID 16865337 DOI: 10.1007/S00216-006-0622-Z  0.256
1997 Onstott TC, Tobin K, Dong H, DeFlaun MF, Fredrickson JK, Bailey T, Brockman F, Kieft T, Peacock A, White DC, Balkwill D, Phelps TJ, Boone DR. The deep gold mines of South Africa: Windows into the subsurface biosphere Proceedings of Spie - the International Society For Optical Engineering. 3111: 344-357. DOI: 10.1117/12.278789  0.256
2003 Mormile MR, Biesen MA, Gutierrez MC, Ventosa A, Pavlovich JB, Onstott TC, Fredrickson JK. Isolation of Halobacterium salinarum retrieved directly from halite brine inclusions. Environmental Microbiology. 5: 1094-102. PMID 14641589 DOI: 10.1046/J.1462-2920.2003.00509.X  0.255
2004 Daly MJ, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Venkateswaran A, Hess M, Omelchenko MV, Kostandarithes HM, Makarova KS, Wackett LP, Fredrickson JK, Ghosal D. Accumulation of Mn(II) in Deinococcus radiodurans facilitates gamma-radiation resistance. Science (New York, N.Y.). 306: 1025-8. PMID 15459345 DOI: 10.1126/Science.1103185  0.254
2009 Gorby YA, Yanina S, McLean JS, Rosso KM, Moyles D, Dohnalkova A, Beveridge TJ, In SC, Byung HK, Kyung SK, Culley DE, Reed SB, Romine MF, Saffarini DA, Hill EA, ... ... Fredrickson JK, et al. Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms (Proceedings of the National Academy of Sciences of the United States of America (2006) 103, 30, (11358-11363) DOI 10.1073/pnas.0604517103) Proceedings of the National Academy of Sciences of the United States of America. 106: 9535. DOI: 10.1073/Pnas.0903426106  0.254
1995 Stillwell LC, Thurston SJ, Schneider RP, Romine MF, Fredrickson JK, Saffer JD. Physical mapping and characterization of a catabolic plasmid from the deep-subsurface bacterium Sphingomonas sp. strain F199. Journal of Bacteriology. 177: 4537-9. PMID 7635838 DOI: 10.1128/Jb.177.15.4537-4539.1995  0.252
2004 Romine MF, Elias DA, Monroe ME, Auberry K, Fang R, Fredrickson JK, Anderson GA, Smith RD, Lipton MS. Validation of Shewanella oneidensis MR-1 small proteins by AMT tag-based proteome analysis. Omics : a Journal of Integrative Biology. 8: 239-54. PMID 15669716 DOI: 10.1089/Omi.2004.8.239  0.251
1997 Workman DJ, Woods SL, Gorby YA, Fredrickson JK, Truex MJ. Microbial reduction of vitamin B12 by Shewanella alga strain BrY with subsequent transformation of carbon tetrachloride Environmental Science and Technology. 31: 2292-2297. DOI: 10.1021/Es960880A  0.25
2003 Kukkadapu RK, Zachara JM, Fredrickson JK, Smith SC, Dohnalkova AC, Russell CK. Transformation of 2-line ferrihydrite to 6-line ferrihydrite under oxic and anoxic conditions American Mineralogist. 88: 1903-1914. DOI: 10.2138/Am-2003-11-1233  0.248
2013 Melnicki MR, Pinchuk GE, Hill EA, Kucek LA, Stolyar SM, Fredrickson JK, Konopka AE, Beliaev AS. Feedback-controlled LED photobioreactor for photophysiological studies of cyanobacteria. Bioresource Technology. 134: 127-33. PMID 23500569 DOI: 10.1016/J.Biortech.2013.01.079  0.247
2003 Dohnalkova A, Mackey M, Trease H, Fredrickson J, Ellisman M. 3D Reconstruction of Bacterial Cells Provides Basis for Modeling their Cellular Processes and Molecular Networks Microscopy and Microanalysis. 9: 1158-1159. DOI: 10.1017/S1431927603445790  0.244
2017 Bernstein HC, McClure RS, Thiel V, Sadler NC, Kim YM, Chrisler WB, Hill EA, Bryant DA, Romine MF, Jansson JK, Fredrickson JK, Beliaev AS. Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership. Msystems. 2. PMID 28289730 DOI: 10.1128/mSystems.00181-16  0.241
2006 Kemner KM, Kelly SD, Boyanov M, Ravel B, O'Loughlin EJ, Lai B, Dohnalkova AC, Marshall MJ, Fredrickson JK, Glasauer S, Beveridge TJ, Daly MJ, Nealson KH. X-ray microscopy analysis of bacterial cells Microscopy and Microanalysis. 12: 1216-1217. DOI: 10.1017/S143192760606274X  0.233
2017 Graham EB, Crump AR, Resch CT, Fansler S, Arntzen E, Kennedy DW, Fredrickson JK, Stegen JC. Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes. Environmental Microbiology. PMID 28276134 DOI: 10.1111/1462-2920.13720  0.233
1997 Chandler DP, Brockman FJ, Fredrickson JK. Use of 16s rDNA clone libraries to study changes in a microbial community resulting from ex situ perturbation of a subsurface sediment Fems Microbiology Reviews. 20: 217-230. DOI: 10.1016/S0168-6445(97)00009-0  0.232
2009 Hartshorne RS, Reardon CL, Ross D, Nuester J, Clarke TA, Gates AJ, Mills PC, Fredrickson JK, Zachara JM, Shi L, Beliaev AS, Marshall MJ, Tien M, Brantley S, Butt JN, et al. Characterization of an electron conduit between bacteria and the extracellular environment. Proceedings of the National Academy of Sciences of the United States of America. 106: 22169-74. PMID 20018742 DOI: 10.1073/Pnas.0900086106  0.218
2009 Shi L, Richardson DJ, Wang Z, Kerisit SN, Rosso KM, Zachara JM, Fredrickson JK. The roles of outer membrane cytochromes of Shewanella and Geobacter in extracellular electron transfer. Environmental Microbiology Reports. 1: 220-7. PMID 23765850 DOI: 10.1111/j.1758-2229.2009.00035.x  0.215
2023 Moran JJ, Bernstein HC, Mobberley JM, Thompson AM, Kim YM, Dana KL, Cory AB, Courtney S, Renslow RS, Fredrickson JK, Kreuzer HW, Lipton MS. Daylight-driven carbon exchange through a vertically structured microbial community. Frontiers in Microbiology. 14: 1139213. PMID 37303779 DOI: 10.3389/fmicb.2023.1139213  0.212
2012 Richardson DJ, Butt JN, Fredrickson JK, Zachara JM, Shi L, Edwards MJ, White G, Baiden N, Gates AJ, Marritt SJ, Clarke TA. The 'porin-cytochrome' model for microbe-to-mineral electron transfer. Molecular Microbiology. 85: 201-12. PMID 22646977 DOI: 10.1111/j.1365-2958.2012.08088.x  0.212
2003 Moser DP, Onstott TC, Fredrickson JK, Brockman FJ, Balkwill DL, Drake GR, Pfiffner SM, White DC, Takai K, Pratt LM, Fong J, Lollar BS, Slater G, Phelps TJ, Spoelstra N, et al. Temporal Shifts in the Geochemistry and Microbial Community Structure of an Ultradeep Mine Borehole Following Isolation Geomicrobiology Journal. 20: 517-548. DOI: 10.1080/713851170  0.208
2019 Fredrickson JK, Tiedje JM. Microbial Ecology Becomes the Official Journal of the International Society for Microbial Ecology. Microbial Ecology. 37: 1-2. PMID 9852517 DOI: 10.1007/s002489900124  0.206
2010 Dohnalkova A, Kennedy D, Mancuso J, Marshall M, Mainwaring P, Fredrickson J. High-Throughput 3D Visualization of Large Volumes at High Resolution by 3ViewTM Microscopy and Microanalysis. 16: 1870-1871. DOI: 10.1017/S1431927610058605  0.197
2011 Clarke TA, Edwards MJ, Gates AJ, Hall A, White GF, Bradley J, Reardon CL, Shi L, Beliaev AS, Marshall MJ, Wang Z, Watmough NJ, Fredrickson JK, Zachara JM, Butt JN, et al. Structure of a bacterial cell surface decaheme electron conduit. Proceedings of the National Academy of Sciences of the United States of America. 108: 9384-9. PMID 21606337 DOI: 10.1073/Pnas.1017200108  0.194
2012 Richardson DJ, Edwards MJ, White GF, Baiden N, Hartshorne RS, Fredrickson J, Shi L, Zachara J, Gates AJ, Butt JN, Clarke TA. Exploring the biochemistry at the extracellular redox frontier of bacterial mineral Fe(III) respiration Biochemical Society Transactions. 40: 493-500. PMID 22616858 DOI: 10.1042/BST20120018  0.192
2006 Lipton MS, Romine MF, Monroe ME, Elias DA, Pasa-Tolic L, Anderson GA, Anderson DJ, Fredrickson J, Hixson KK, Masselon C, Mottaz H, Tolic N, Smith RD. AMT tag approach to proteomic characterization of Deinococcus radiodurans and Shewanella oneidensis. Methods of Biochemical Analysis. 49: 113-34. PMID 16929677 DOI: 10.1002/0471973165.Ch9  0.191
2010 Jansson JK, Fredrickson JK. Stewards of a changing planet: commentaries from ISME13 Plenary Lecturers. The Isme Journal. 4: 1079-80. PMID 20733576 DOI: 10.1038/Ismej.2010.114  0.184
2021 Khanal A, Hur HG, Fredrickson JK, Lee JH. Direct and indirect reduction of Cr(VI) by fermentative Fe(III)-reducing sp. strain Cellu-2a. Journal of Microbiology and Biotechnology. 31. PMID 34489371 DOI: 10.4014/jmb.2107.07038  0.184
1997 Chandler DP, Brockman FJ, Fredrickson JK. Novel archaea and bacteria in a hydrologically isolated deep subsurface environment Proceedings of Spie - the International Society For Optical Engineering. 3111: 519-528. DOI: 10.1117/12.278808  0.182
1997 Chandler DP, Li SM, Spadoni CM, Drake GR, Balkwill DL, Fredrickson JK, Brockman FJ. A molecular comparison of culturable aerobic heterotrophic bacteria and 16s rDNA clones derived from a deep subsurface sediment Fems Microbiology Ecology. 23: 131-144. DOI: 10.1016/S0168-6496(97)00021-4  0.177
1990 Stewart DL, Thomas BL, Bean RM, Fredrickson JK. Colonization and degradation of oxidized bituminous and lignite coals by fungi Journal of Industrial Microbiology. 6: 53-59. DOI: 10.1007/BF01576177  0.173
2002 Dohnalkova AC, Kennedy DW, Fredrickson JK. TEM Approach in Investigations of Microbially Assisted Uranium Reduction Microscopy and Microanalysis. 8: 750-751. DOI: 10.1017/S1431927602106556  0.164
2007 Lee JH, Kim MG, Yoo B, Myung NV, Maeng J, Lee T, Dohnalkova AC, Fredrickson JK, Sadowsky MJ, Hur HG. Biogenic formation of photoactive arsenic-sulfide nanotubes by Shewanella sp. strain HN-41. Proceedings of the National Academy of Sciences of the United States of America. 104: 20410-5. PMID 18077394 DOI: 10.1073/Pnas.0707595104  0.157
1995 Ogram A, Sun W, Brockman FJ, Fredrickson JK. Isolation and characterization of RNA from low-biomass deep-subsurface sediments. Applied and Environmental Microbiology. 61: 763-8. PMID 7574612 DOI: 10.1128/aem.61.2.763-768.1995  0.157
1990 Fredrickson JK, Stewart DL, Campbell JA, Powell MA, McMulloch M, Pyne JW, Bean RM. Biosolubilization of low-rank coal by a Trametes versicolor siderophore-like product and other complexing agents Journal of Industrial Microbiology. 5: 401-406. DOI: 10.1007/BF01578100  0.151
1995 SEIDLER RJ, FREDRICKSON JK. Introduction to the Special Issue on Molecular Microbial Ecology Molecular Ecology. 4: 533-534. DOI: 10.1111/J.1365-294X.1995.TB00253.X  0.146
2016 Yan S, Liu Y, Liu C, Shi L, Shang J, Shan H, Zachara J, Fredrickson J, Kennedy D, Resch CT, Thompson C, Fansler S. Nitrate bioreduction in redox-variable low permeability sediments Science of the Total Environment. 539: 185-195. DOI: 10.1016/j.scitotenv.2015.08.122  0.141
1997 Fredrickson J, Onstott T. Microbes deep inside the earth American Journal of Ophthalmology. 123: 151. DOI: 10.1016/S0002-9394(14)71022-0  0.139
1996 Fredrickson JK, Onstott TC. Microbes deep inside the earth. Scientific American. 275: 68-73. PMID 8797299 DOI: 10.1038/SCIENTIFICAMERICAN1096-68  0.139
2021 Nogrado K, Cho A, Han D, Ho CT, Fredrickson JK, Lee JH. Complete Genome Sequence of Shigella sonnei Strain SE6-1, Capable of Selenate Reduction. Microbiology Resource Announcements. 10. PMID 33795341 DOI: 10.1128/MRA.00135-21  0.132
2014 Edwards MJ, Baiden NA, Johs A, Tomanicek SJ, Liang L, Shi L, Fredrickson JK, Zachara JM, Gates AJ, Butt JN, Richardson DJ, Clarke TA. The X-ray crystal structure of Shewanella oneidensis OmcA reveals new insight at the microbe-mineral interface. Febs Letters. 588: 1886-90. PMID 24747425 DOI: 10.1016/j.febslet.2014.04.013  0.119
1989 Fredrickson JK, Bentjen SA, Bolton Jr. H, Li SW, Voris PV. Fate of Tn5 mutants of root growth-inhibiting Pseudomonas sp. in intact soil-core microcosms Canadian Journal of Microbiology. 35: 867-873. DOI: 10.1139/M89-145  0.11
2006 Harvey SD, Mong GM, Ozanich RM, McLean JS, Goodwin SM, Valentine NB, Fredrickson JK. Preparation and evaluation of spore-specific affinity-augmented bio-imprinted beads Analytical and Bioanalytical Chemistry. 386: 211-219. DOI: 10.1007/s00216-006-0622-z  0.109
2008 Kieft TL, Phelps TJ, Fredrickson JK. ChemInform Abstract: Drilling, Coring, and Sampling Subsurface Environments Cheminform. 39. DOI: 10.1002/CHIN.200811273  0.09
1989 Bolton H, Elliott LF, Gurusiddaiah S, Fredrickson JK. Characterization of a toxin produced by a rhizobacterialPseudomonas sp. that inhibits wheat growth Plant and Soil. 114: 279-287. DOI: 10.1007/BF02220808  0.084
1997 Fredrickson JK, Chandler DP, Onstott TC. Potential for preservation of Halobacteria and their macromolecular constituents in brine inclusions from bedded salt deposits Proceedings of Spie - the International Society For Optical Engineering. 3111: 318-329. DOI: 10.1117/12.278786  0.08
1987 Fredrickson J, Elliott L, Engibous J. Crop residues as substrate for host-specific inhibitory pseudomonads Soil Biology and Biochemistry. 19: 127-134. DOI: 10.1016/0038-0717(87)90071-X  0.076
1999 Geoffroy JM, Fredrickson JK, Shelton JT. A mixture experiment approach for controlling the dissolution rate of a sustained-release tablet. Drug Development and Industrial Pharmacy. 24: 799-806. PMID 9876530 DOI: 10.3109/03639049809088524  0.068
1985 Fredrickson JK, Elliott LF. Effects on winter wheat seedling growth by toxin-producing rhizobacteria Plant and Soil. 83: 399-409. DOI: 10.1007/BF02184452  0.061
1992 Kennedy AC, Bolton H, Stroo HF, Elliott LF, Fredrickson JK. Competitive abilities of Tn5 Tox- mutants of a rhizobacterium inhibitory to wheat growth Plant and Soil. 144: 143-153. DOI: 10.1007/BF00018855  0.059
1982 Fredrickson JK, Koehler FE, Cheng HH. Availability of 15N-Labeled Nitrogen in Fertilizer and in Wheat Straw to Wheat in Tilled and No-Till Soil Soil Science Society of America Journal. 46: 1218-1222. DOI: 10.2136/SSSAJ1982.03615995004600060020X  0.054
1988 Li SW, Fredrickson JK, Ligotke MW, Van Voris P, Rogers JE. Influence of smoke exposure on soil enzyme activities and nitrification Biology and Fertility of Soils. 6: 341-346. DOI: 10.1007/BF00261024  0.047
1985 Fredrickson JK, Elliott LF. Colonization of Winter Wheat Roots by Inhibitory Rhizobacteria Soil Science Society of America Journal. 49: 1172-1177. DOI: 10.2136/SSSAJ1985.03615995004900050020X  0.031
2010 Marshall MJ, Beliaev AS, Fredrickson JK. Microbiological Transformations of Radionuclides in the Subsurface Environmental Microbiology: Second Edition. 95-114. DOI: 10.1002/9780470495117.ch4  0.03
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