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Bryan Bartley - Publications

Affiliations: 
2009-2014 Bioengineering University of Washington, Seattle, Seattle, WA 
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Cummins B, Vrana J, Moseley RC, Eramian H, Deckard A, Fontanarrosa P, Bryce D, Weston M, Zheng G, Nowak J, Motta FC, Eslami M, Johnson KL, Goldman RP, Myers CJ, ... ... Bartley B, et al. Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop. Synthetic Biology (Oxford, England). 8: ysad005. PMID 37073283 DOI: 10.1093/synbio/ysad005  0.355
2022 Mitchell T, Beal J, Bartley B. pySBOL3: SBOL3 for Python Programmers. Acs Synthetic Biology. PMID 35767721 DOI: 10.1021/acssynbio.2c00249  0.41
2022 Bryce D, Goldman RP, DeHaven M, Beal J, Bartley B, Nguyen TT, Walczak N, Weston M, Zheng G, Nowak J, Lee P, Stubbs J, Gaffney N, Vaughn MW, Myers CJ, et al. Round Trip: An Automated Pipeline for Experimental Design, Execution, and Analysis. Acs Synthetic Biology. PMID 35099189 DOI: 10.1021/acssynbio.1c00305  0.344
2021 Baig H, Fontanarossa P, Kulkarni V, McLaughlin J, Vaidyanathan P, Bartley B, Bhakta S, Bhatia S, Bissell M, Clancy K, Cox RS, Goñi Moreno A, Gorochowski T, Grunberg R, Lee J, et al. Synthetic biology open language visual (SBOL Visual) version 2.3. Journal of Integrative Bioinformatics. PMID 34098590 DOI: 10.1515/jib-2020-0045  0.617
2021 Collins JH, Keating KW, Jones TR, Balaji S, Marsan CB, Çomo M, Newlon ZJ, Mitchell T, Bartley B, Adler A, Roehner N, Young EM. Engineered yeast genomes accurately assembled from pure and mixed samples. Nature Communications. 12: 1485. PMID 33674578 DOI: 10.1038/s41467-021-21656-9  0.3
2020 McLaughlin JA, Beal J, Mısırlı G, Grünberg R, Bartley BA, Scott-Brown J, Vaidyanathan P, Fontanarrosa P, Oberortner E, Wipat A, Gorochowski TE, Myers CJ. The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering. Frontiers in Bioengineering and Biotechnology. 8: 1009. PMID 33015004 DOI: 10.3389/fbioe.2020.01009  0.376
2020 Brown B, Bartley B, Beal J, Bird JE, Goñi Moreno Á, McLaughlin JA, Misirli G, Roehner N, Skelton DJ, Poh CL, Ofiteru ID, James K, Wipat A. Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL). Acs Synthetic Biology. PMID 32786354 DOI: 10.1021/Acssynbio.0C00176  0.423
2020 Baig H, Fontanarrosa P, Kulkarni V, McLaughlin JA, Vaidyanathan P, Bartley B, Beal J, Crowther M, Gorochowski TE, Grünberg R, Misirli G, Scott-Brown J, Oberortner E, Wipat A, Myers CJ. Synthetic biology open language (SBOL) version 3.0.0. Journal of Integrative Bioinformatics. PMID 32589605 DOI: 10.1515/Jib-2020-0017  0.46
2020 Baig H, Fontanarossa P, Kulkarni V, McLaughlin J, Vaidyanathan P, Bartley B, Bhatia S, Bhakta S, Bissell M, Clancy K, Cox RS, Moreno AG, Gorochowski T, Grunberg R, Luna A, et al. Synthetic biology open language visual (SBOL visual) version 2.2. Journal of Integrative Bioinformatics. PMID 32543457 DOI: 10.1515/jib-2020-0014  0.636
2020 Crowther M, Grozinger L, Pocock M, Taylor CPD, McLaughlin JA, Misirli G, Bartley B, Beal J, Goni-Moreno A, Wipat A. ShortBOL: A language for scripting designs for engineered biological systems using SyntheticBiology Open Language (SBOL). Acs Synthetic Biology. PMID 32129980 DOI: 10.1021/acssynbio.9b00470  0.416
2019 Martínez-García E, Goñi-Moreno A, Bartley B, McLaughlin J, Sánchez-Sampedro L, Pascual Del Pozo H, Prieto Hernández C, Marletta AS, De Lucrezia D, Sánchez-Fernández G, Fraile S, de Lorenzo V. SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts. Nucleic Acids Research. PMID 31740968 DOI: 10.1093/nar/gkz1024  0.369
2019 Beal J, Nguyen T, Gorochowski TE, Goñi-Moreno A, Scott-Brown J, McLaughlin JA, Madsen C, Aleritsch B, Bartley B, Bhakta S, Bissell M, Castillo-Hair SM, Clancy K, Luna A, Le Novere N, et al. Communicating Structure and Function in Synthetic Biology Diagrams. Acs Synthetic Biology. PMID 31348656 DOI: 10.1021/Acssynbio.9B00139  0.658
2019 Roehner N, Bartley B, Beal J, McLaughlin J, Pocock M, Zhang M, Zundel Z, Myers CJ. Specifying Combinatorial Designs with the Synthetic Biology Open Language (SBOL). Acs Synthetic Biology. PMID 31260271 DOI: 10.1021/acssynbio.9b00092  0.405
2019 Madsen C, Goñi Moreno A, P U, Palchick Z, Roehner N, Atallah C, Bartley B, Choi K, Cox RS, Gorochowski T, Grünberg R, Macklin C, McLaughlin J, Meng X, Nguyen T, et al. Synthetic Biology Open Language (SBOL) Version 2.3. Journal of Integrative Bioinformatics. PMID 31199770 DOI: 10.1515/Jib-2019-0025  0.702
2019 Madsen C, Goni Moreno A, Palchick Z, P U, Roehner N, Bartley B, Bhatia S, Bhakta S, Bissell M, Clancy K, Cox RS, Gorochowski T, Grunberg R, Luna A, McLaughlin J, et al. Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1. Journal of Integrative Bioinformatics. PMID 31199768 DOI: 10.1515/jib-2018-0101  0.634
2018 Bartley B, Choi K, Samineni M, Zundel Z, Nguyen T, Myers CJ, Sauro H. pySBOL: A Python Package for Genetic Design Automation and Standardization. Acs Synthetic Biology. PMID 30424601 DOI: 10.1021/Acssynbio.8B00336  0.678
2018 Cox RS, Madsen C, McLaughlin JA, Nguyen T, Roehner N, Bartley B, Beal J, Bissell M, Choi K, Clancy K, Grünberg R, Macklin C, Misirli G, Oberortner E, Pocock M, et al. Synthetic Biology Open Language (SBOL) Version 2.2.0. Journal of Integrative Bioinformatics. PMID 29605823 DOI: 10.1515/Jib-2018-0001  0.707
2018 Cox RS, Madsen C, McLaughlin J, Nguyen T, Roehner N, Bartley B, Bhatia S, Bissell M, Clancy K, Gorochowski T, Grünberg R, Luna A, Le Novere N, Pocock M, Sauro H, et al. Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. Journal of Integrative Bioinformatics. PMID 29549707 DOI: 10.1515/Jib-2017-0074  0.67
2017 Bartley BA, Kim K, Medley JK, Sauro HM. Synthetic Biology: Engineering Living Systems from Biophysical Principles. Biophysical Journal. 112: 1050-1058. PMID 28355534 DOI: 10.1016/J.Bpj.2017.02.013  0.619
2016 Beal J, Cox RS, Grünberg R, McLaughlin J, Nguyen T, Bartley B, Bissell M, Choi K, Clancy K, Macklin C, Madsen C, Misirli G, Oberortner E, Pocock M, Roehner N, et al. Synthetic Biology Open Language (SBOL) Version 2.1.0. Journal of Integrative Bioinformatics. 13: 30-132. PMID 29215992 DOI: 10.1515/jib-2016-291  0.696
2016 Beal J, Cox RS, Grünberg R, McLaughlin J, Nguyen T, Bartley B, Bissell M, Choi K, Clancy K, Macklin C, Madsen C, Misirli G, Oberortner E, Pocock M, Roehner N, et al. Synthetic Biology Open Language (SBOL) Version 2.1.0. Journal of Integrative Bioinformatics. 13: 291. PMID 28187407 DOI: 10.2390/biecoll-jib-2016-291  0.696
2016 Der BS, Glassey E, Bartley BA, Enghuus C, Goodman DB, Gordon DB, Voigt CA, Gorochowski TE. DNAplotlib: programmable visualization of genetic designs and associated data. Acs Synthetic Biology. PMID 27744689 DOI: 10.1021/Acssynbio.6B00252  0.363
2016 Roehner N, Beal J, Clancy K, Bartley B, Misirli G, Gruenberg R, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang M, Zhang Z, Zundel Z, Densmore D, et al. Sharing Structure and Function in Biological Design with SBOL 2.0. Acs Synthetic Biology. PMID 27111421 DOI: 10.1021/Acssynbio.5B00215  0.695
2015 Bartley B, Beal J, Clancy K, Misirli G, Roehner N, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang Z, Gennari JH, Myers C, Wipat A, Sauro H. Synthetic Biology Open Language (SBOL) Version 2.0.0. Journal of Integrative Bioinformatics. 12: 902-991. PMID 29220967 DOI: 10.1515/jib-2015-272  0.712
2015 Bartley B, Beal J, Clancy K, Misirli G, Roehner N, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang Z, Gennari JH, Myers C, Wipat A, Sauro H. Synthetic Biology Open Language (SBOL) Version 2.0.0. Journal of Integrative Bioinformatics. 12: 272. PMID 26528570 DOI: 10.1515/Jib-2016-291  0.73
2015 Kim KH, Choi K, Bartley B, Sauro HM. Controlling E. coli Gene Expression Noise. Ieee Transactions On Biomedical Circuits and Systems. PMID 26372647 DOI: 10.1109/Tbcas.2015.2461135  0.524
2014 Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, et al. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology. Nature Biotechnology. 32: 545-50. PMID 24911500 DOI: 10.1038/Nbt.2891  0.718
2012 Copeland WB, Bartley BA, Chandran D, Galdzicki M, Kim KH, Sleight SC, Maranas CD, Sauro HM. Computational tools for metabolic engineering. Metabolic Engineering. 14: 270-80. PMID 22629572 DOI: 10.1016/J.Ymben.2012.03.001  0.599
2010 Sleight SC, Bartley BA, Lieviant JA, Sauro HM. Designing and engineering evolutionary robust genetic circuits. Journal of Biological Engineering. 4: 12. PMID 21040586 DOI: 10.1186/1754-1611-4-12  0.534
2010 Sleight SC, Bartley BA, Lieviant JA, Sauro HM. In-Fusion BioBrick assembly and re-engineering. Nucleic Acids Research. 38: 2624-36. PMID 20385581 DOI: 10.1093/Nar/Gkq179  0.567
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