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Jiayu Chen - Publications

Affiliations: 
2010-2015 Institute of Molecular Medicine Peking University, Beijing, Beijing Shi, China 
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Xiao C, Mo F, Lu Y, Xiao Q, Yao C, Li T, Qi J, Liu X, Chen JY, Zhang L, Guo T, Hu B, An NA, Li CY. Reply to: Identification of old coding regions disproves the hominoid de novo status of genes. Nature Ecology & Evolution. PMID 39187608 DOI: 10.1038/s41559-024-02515-4  0.584
2024 Liu X, Xiao C, Xu X, Zhang J, Mo F, Chen JY, Delihas N, Zhang L, An NA, Li CY. Origin of functional de novo genes in humans from "hopeful monsters". Wiley Interdisciplinary Reviews. Rna. 15: e1845. PMID 38605485 DOI: 10.1002/wrna.1845  0.655
2023 Wang Z, Ge P, Zhou XL, Shui KM, Geng H, Yang J, Chen JY, Wang J. nASAP: A Nascent RNA Profiling Data Analysis Platform. Journal of Molecular Biology. 435: 168142. PMID 37356907 DOI: 10.1016/j.jmb.2023.168142  0.34
2023 An NA, Zhang J, Mo F, Luan X, Tian L, Shen QS, Li X, Li C, Zhou F, Zhang B, Ji M, Qi J, Zhou WZ, Ding W, Chen JY, et al. De novo genes with an lncRNA origin encode unique human brain developmental functionality. Nature Ecology & Evolution. PMID 36593289 DOI: 10.1038/s41559-022-01925-6  0.68
2022 Huang YJ, Chen JY, Yan M, Davis AG, Miyauchi S, Chen L, Hao Y, Katz S, Bejar R, Abdel-Wahab O, Fu XD, Zhang DE. RUNX1 deficiency cooperates with SRSF2 mutation to induce multilineage hematopoietic defects characteristic of MDS. Blood Advances. PMID 36206200 DOI: 10.1182/bloodadvances.2022007804  0.526
2021 Lin R, Zhong X, Zhou Y, Geng H, Hu Q, Huang Z, Hu J, Fu XD, Chen L, Chen JY. R-loopBase: a knowledgebase for genome-wide R-loop formation and regulation. Nucleic Acids Research. PMID 34792163 DOI: 10.1093/nar/gkab1103  0.446
2021 Chen C, Liu W, Guo J, Liu Y, Liu X, Liu J, Dou X, Le R, Huang Y, Li C, Yang L, Kou X, Zhao Y, Wu Y, Chen J, et al. Nuclear mA reader YTHDC1 regulates the scaffold function of LINE1 RNA in mouse ESCs and early embryos. Protein & Cell. PMID 33886094 DOI: 10.1007/s13238-021-00837-8  0.32
2021 Van Nostrand EL, Freese P, Pratt GA, Wang X, Wei X, Xiao R, Blue SM, Chen JY, Cody NAL, Dominguez D, Olson S, Sundararaman B, Zhan L, Bazile C, Bouvrette LPB, et al. Author Correction: A large-scale binding and functional map of human RNA-binding proteins. Nature. PMID 33402748 DOI: 10.1038/s41586-020-03067-w  0.498
2020 Hao Y, Wang D, Wu S, Li X, Shao C, Zhang P, Chen JY, Lim DH, Fu XD, Chen R, He S. Active retrotransposons help maintain pericentromeric heterochromatin required for faithful cell division. Genome Research. PMID 33060173 DOI: 10.1101/gr.256131.119  0.556
2020 Xu J, Wang W, Xu L, Chen JY, Chong J, Oh J, Leschziner AE, Fu XD, Wang D. Cockayne syndrome B protein acts as an ATP-dependent processivity factor that helps RNA polymerase II overcome nucleosome barriers. Proceedings of the National Academy of Sciences of the United States of America. PMID 32989164 DOI: 10.1073/pnas.2013379117  0.484
2020 Van Nostrand EL, Freese P, Pratt GA, Wang X, Wei X, Xiao R, Blue SM, Chen JY, Cody NAL, Dominguez D, Olson S, Sundararaman B, Zhan L, Bazile C, Bouvrette LPB, et al. A large-scale binding and functional map of human RNA-binding proteins. Nature. 583: 711-719. PMID 32728246 DOI: 10.1038/S41586-020-2077-3  0.579
2020 Chen JY, Lim DH, Fu XD. Mechanistic Dissection of RNA-Binding Proteins in Regulated Gene Expression at Chromatin Levels. Cold Spring Harbor Symposia On Quantitative Biology. PMID 31900328 DOI: 10.1101/Sqb.2019.84.039222  0.607
2019 Xiao R, Chen JY, Liang Z, Luo D, Chen G, Lu ZJ, Chen Y, Zhou B, Li H, Du X, Yang Y, San M, Wei X, Liu W, Lécuyer E, et al. Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription. Cell. 178: 107-121.e18. PMID 31251911 DOI: 10.1016/J.Cell.2019.06.001  0.576
2019 Chen JY, Zhang X, Fu XD, Chen L. R-ChIP for genome-wide mapping of R-loops by using catalytically inactive RNASEH1. Nature Protocols. PMID 30996261 DOI: 10.1038/S41596-019-0154-6  0.501
2019 Liu C, Spinozzi S, Chen JY, Fang X, Feng W, Perkins G, Cattaneo P, Guimarães-Camboa N, Dalton ND, Peterson KL, Wu T, Ouyang K, Fu XD, Evans SM, Chen J. Nexilin is a New Component of Junctional Membrane Complexes Required for Cardiac T-Tubule Formation. Circulation. PMID 30982350 DOI: 10.1161/Circulationaha.119.039751  0.412
2019 An NA, Ding W, Yang XZ, Peng J, He BZ, Shen QS, Lu F, He A, Zhang YE, Tan BC, Chen JY, Li CY. Evolutionarily significant A-to-I RNA editing events originated through G-to-A mutations in primates. Genome Biology. 20: 24. PMID 30712515 DOI: 10.1186/s13059-019-1638-y  0.629
2018 Xiao Y, Wang C, Chen JY, Lu F, Wang J, Hou N, Hu X, Zeng F, Ma D, Sun X, Ding Y, Zhang Y, Zheng W, Liu Y, Shang H, ... ... Chen J, et al. Deficiency of PRKD2 triggers hyperinsulinemia and metabolic disorders. Nature Communications. 9: 2015. PMID 29789568 DOI: 10.1038/S41467-018-04352-Z  0.547
2018 Chen L, Chen JY, Huang YJ, Gu Y, Qiu J, Qian H, Shao C, Zhang X, Hu J, Li H, He S, Zhou Y, Abdel-Wahab O, Zhang DE, Fu XD. The Augmented R-Loop Is a Unifying Mechanism for Myelodysplastic Syndromes Induced by High-Risk Splicing Factor Mutations. Molecular Cell. 69: 412-425.e6. PMID 29395063 DOI: 10.1016/J.Molcel.2017.12.029  0.508
2017 Chen L, Chen JY, Zhang X, Gu Y, Xiao R, Shao C, Tang P, Qian H, Luo D, Li H, Zhou Y, Zhang DE, Fu XD. R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters. Molecular Cell. PMID 29104020 DOI: 10.1016/J.Molcel.2017.10.008  0.527
2017 Zhang SJ, Wang C, Yan S, Fu A, Luan X, Li Y, Sunny Shen Q, Zhong X, Chen JY, Wang X, Chin-Ming Tan B, He A, Li CY. Isoform Evolution in Primates through Independent Combination of Alternative RNA Processing Events. Molecular Biology and Evolution. 34: 2453-2468. PMID 28957512 DOI: 10.1093/molbev/msx212  0.677
2017 Li H, Lai P, Jia J, Song Y, Xia Q, Huang K, He N, Ping W, Chen J, Yang Z, Li J, Yao M, Dong X, Zhao J, Hou C, et al. RNA Helicase DDX5 Inhibits Reprogramming to Pluripotency by miRNA-Based Repression of RYBP and its PRC1-Dependent and -Independent Functions. Cell Stem Cell. PMID 28111200 DOI: 10.1016/J.Stem.2016.12.002  0.352
2016 Lei L, Yan SY, Yang R, Chen JY, Li Y, Bu Y, Chang N, Zhou Q, Zhu X, Li CY, Xiong JW. Spliceosomal protein eftud2 mutation leads to p53-dependent apoptosis in zebrafish neural progenitors. Nucleic Acids Research. PMID 27899647 DOI: 10.1093/nar/gkw1043  0.637
2016 Zhong X, Peng J, Shen QS, Chen JY, Gao H, Luan X, Yan S, Huang X, Zhang SJ, Xu L, Zhang X, Tan BC, Li CY. RhesusBase PopGateway: Genome-wide Population Genetics Atlas in Rhesus Macaque. Molecular Biology and Evolution. PMID 26882984 DOI: 10.1093/molbev/msw025  0.596
2015 Yang XZ, Chen JY, Liu CJ, Peng J, Wee YR, Han X, Wang C, Zhong X, Shen QS, Liu H, Cao H, Chen X, Tan BC, Li CY. Selectively Constrained RNA Editing Regulation Crosstalks with piRNA Biogenesis in Primates. Molecular Biology and Evolution. PMID 26341297 DOI: 10.1093/molbev/msv183  0.67
2015 Chen JY, Shen QS, Zhou WZ, Peng J, He BZ, Li Y, Liu CJ, Luan X, Ding W, Li S, Chen C, Tan BC, Zhang YE, He A, Li CY. Emergence, Retention and Selection: A Trilogy of Origination for Functional De Novo Proteins from Ancestral LncRNAs in Primates. Plos Genetics. 11: e1005391. PMID 26177073 DOI: 10.1371/journal.pgen.1005391  0.657
2014 Chen JY, Peng Z, Zhang R, Yang XZ, Tan BC, Fang H, Liu CJ, Shi M, Ye ZQ, Zhang YE, Deng M, Zhang X, Li CY. RNA editome in rhesus macaque shaped by purifying selection. Plos Genetics. 10: e1004274. PMID 24722121 DOI: 10.1371/journal.pgen.1004274  0.661
2014 Zhang SJ, Liu CJ, Yu P, Zhong X, Chen JY, Yang X, Peng J, Yan S, Wang C, Zhu X, Xiong J, Zhang YE, Tan BC, Li CY. Evolutionary interrogation of human biology in well-annotated genomic framework of rhesus macaque. Molecular Biology and Evolution. 31: 1309-24. PMID 24577841 DOI: 10.1093/molbev/msu084  0.631
2013 Zhang SJ, Liu CJ, Shi M, Kong L, Chen JY, Zhou WZ, Zhu X, Yu P, Wang J, Yang X, Hou N, Ye Z, Zhang R, Xiao R, Zhang X, et al. RhesusBase: a knowledgebase for the monkey research community. Nucleic Acids Research. 41: D892-905. PMID 22965133 DOI: 10.1093/nar/gks835  0.646
2012 Xie C, Zhang YE, Chen JY, Liu CJ, Zhou WZ, Li Y, Zhang M, Zhang R, Wei L, Li CY. Hominoid-specific de novo protein-coding genes originating from long non-coding RNAs. Plos Genetics. 8: e1002942. PMID 23028352 DOI: 10.1371/Journal.Pgen.1002942  0.708
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