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Ivan V. Korendovych - Publications

Affiliations: 
2011- Chemistry Syracuse University, Syracuse, NY, United States 
Area:
Biochemistry, protein design
Website:
https://korendovychgroup.syr.edu/
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75 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Batra R, Loeffler TD, Chan H, Srinivasan S, Cui H, Korendovych IV, Nanda V, Palmer LC, Solomon LA, Fry HC, Sankaranarayanan SKRS. Machine learning overcomes human bias in the discovery of self-assembling peptides. Nature Chemistry. PMID 36316409 DOI: 10.1038/s41557-022-01055-3  0.531
2022 Bhattacharya S, Margheritis EG, Takahashi K, Kulesha A, D'Souza A, Kim I, Yoon JH, Tame JRH, Volkov AN, Makhlynets OV, Korendovych IV. NMR-guided directed evolution. Nature. 610: 389-393. PMID 36198791 DOI: 10.1038/s41586-022-05278-9  0.688
2021 Korendovych I, Zozulia O, Marshall L, Kohn E, Kim I. Self-assembling catalytic peptide nanomaterials capable of highly efficient peroxidase activity. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 33460473 DOI: 10.1002/chem.202100182  0.808
2020 Korendovych I, Lengyel-Zhand Z, Marshall LR, Jung M, Jayachandran M, Kim MC, Kriews A, Makhlynets OV, Fry HC, Geyer A. Covalent linkage and macrocylization preserve and enhance synergistic interactions in catalytic amyloids. Chembiochem : a European Journal of Chemical Biology. PMID 32956537 DOI: 10.1002/Cbic.202000645  0.754
2020 Marshall L, Jayachandran M, Lengyel-Zhand Z, Kriews A, Kim MC, Korendovych I, Rufo C. Synergistic Interactions Are Prevalent in Catalytic Amyloids. Chembiochem : a European Journal of Chemical Biology. PMID 32329215 DOI: 10.1002/Cbic.202000205  0.763
2020 Zozulia O, Korendovych IV. Semi-Rationally Designed Short Peptides Self-Assemble and Bind Hemin to Promote Cyclopropanation. Angewandte Chemie (International Ed. in English). PMID 32128962 DOI: 10.1002/Anie.201916712  0.434
2020 Korendovych IV, DeGrado WF. protein design, a retrospective. Quarterly Reviews of Biophysics. 53: e3. PMID 32041676 DOI: 10.1017/S0033583519000131  0.532
2020 Marshall LR, Jayachandran M, Lengyel‐Zhand Z, Rufo CM, Kriews A, Kim M, Korendovych IV. Cover Feature: Synergistic Interactions Are Prevalent in Catalytic Amyloids (ChemBioChem 18/2020) Chembiochem. 21: 2550-2550. DOI: 10.1002/CBIC.202000570  0.709
2019 Caselle EA, Yoon JH, Bhattacharya S, Rempillo JJL, Lengyel Z, D'Souza A, Moroz YS, Tolbert PL, Volkov AN, Forconi M, Castañeda CA, Makhlynets OV, Korendovych IV. Kemp Eliminases of the AlleyCat Family Possess High Substrate Promiscuity. Chemcatchem. 11: 1425-1430. PMID 31788134 DOI: 10.1002/Cctc.201801994  0.782
2019 Dolan MA, Basa PN, Zozulia O, Lengyel Z, Lebl R, Kohn EM, Bhattacharya S, Korendovych IV. Catalytic Nanoassemblies Formed by Short Peptides Promote Highly Enantioselective Transfer Hydrogenation. Acs Nano. PMID 31314486 DOI: 10.1021/Acsnano.9B03880  0.792
2019 Makhlynets OV, Korendovych IV. A single amino acid enzyme Nature Catalysis. 2: 949-950. DOI: 10.1038/s41929-019-0379-3  0.651
2019 Marshall LR, Zozulia O, Lengyel-Zhand Z, Korendovych IV. Minimalist de Novo Design of Protein Catalysts Acs Catalysis. 9: 9265-9275. DOI: 10.1021/Acscatal.9B02509  0.373
2019 Caselle EA, Yoon JH, Bhattacharya S, Rempillo JJL, Lengyel Z, D'Souza A, Moroz YS, Tolbert PL, Volkov AN, Forconi M, Castañeda CA, Makhlynets OV, Korendovych IV. Front Cover: Kemp Eliminases of the AlleyCat Family Possess High Substrate Promiscuity (ChemCatChem 5/2019) Chemcatchem. 11: 1374-1374. DOI: 10.1002/Cctc.201900266  0.748
2018 Korendovych IV, Ghirlanda G. Editorial overview: The many facets of protein design: from self-assembled materials to vaccines. Current Opinion in Structural Biology. 51: iv-vi. PMID 30401427 DOI: 10.1016/J.Sbi.2018.10.004  0.522
2018 Lengyel Z, Rufo CM, Moroz YS, Makhlynets OV, Korendovych IV. Copper-Containing Catalytic Amyloids Promote Phosphoester Hydrolysis and Tandem Reactions. Acs Catalysis. 8: 59-62. PMID 30319881 DOI: 10.1021/Acscatal.7B03323  0.794
2018 Gosavi PM, Jayachandran M, Rempillo JJL, Zozulia O, Makhlynets OV, Korendovych IV. A Designed Enzyme Promotes Selective Post-translational Acylation. Chembiochem : a European Journal of Chemical Biology. PMID 29756279 DOI: 10.1002/Cbic.201800196  0.81
2018 Lengyel Z, Rufo CM, Korendovych IV. Preparation and Screening of Catalytic Amyloid Assemblies. Methods in Molecular Biology (Clifton, N.J.). 1777: 261-270. PMID 29744841 DOI: 10.1007/978-1-4939-7811-3_16  0.798
2018 Zozulia O, Dolan MA, Korendovych I. Catalytic peptide assemblies Chemical Society Reviews. 47: 3621-3639. PMID 29594277 DOI: 10.1039/C8Cs00080H  0.808
2018 Korendovych IV. Rational and Semirational Protein Design. Methods in Molecular Biology (Clifton, N.J.). 1685: 15-23. PMID 29086301 DOI: 10.1007/978-1-4939-7366-8_2  0.304
2018 Gosavi PM, Jayachandran M, Rempillo JJL, Zozulia O, Makhlynets OV, Korendovych IV. Cover Feature: A Designed Enzyme Promotes Selective Post-translational Acylation (ChemBioChem 15/2018) Chembiochem. 19: 1573-1573. DOI: 10.1002/Cbic.201800365  0.77
2017 Makhlynets OV, Korendovych IV. Finding a Silver Bullet in a Stack of Proteins. Biochemistry. PMID 29232102 DOI: 10.1021/Acs.Biochem.7B01177  0.667
2017 Lee M, Wang T, Makhlynets OV, Wu Y, Polizzi NF, Wu H, Gosavi PM, Stöhr J, Korendovych IV, DeGrado WF, Hong M. Zinc-binding structure of a catalytic amyloid from solid-state NMR. Proceedings of the National Academy of Sciences of the United States of America. PMID 28566494 DOI: 10.1073/Pnas.1706179114  0.802
2017 Li A, Wang B, Ilie A, Dubey KD, Bange G, Korendovych IV, Shaik S, Reetz MT. A redox-mediated Kemp eliminase. Nature Communications. 8: 14876. PMID 28348375 DOI: 10.1038/Ncomms14876  0.332
2017 Takacs M, Makhlynets OV, Tolbert PL, Korendovych IV. Secretion of functional formate dehydrogenase in Pichia pastoris. Protein Engineering, Design & Selection : Peds. 1-6. PMID 28201611 DOI: 10.1093/Protein/Gzx010  0.774
2017 Lee M, Wang T, Makhlynets OV, Wu Y, Polizzi N, Wu H, Gosavi PM, Korendovych IV, DeGrado WF, Hong M. Zinc-Binding Structure of a Catalytic Amyloid from Solid-State NMR Spectroscopy Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr30227  0.774
2016 Gosavi PM, Korendovych IV. Minimalist IR and fluorescence probes of protein function. Current Opinion in Chemical Biology. 34: 103-109. PMID 27599185 DOI: 10.1016/J.Cbpa.2016.08.010  0.779
2016 Makhlynets OV, Korendovych IV. Minimalist Design of Allosterically Regulated Protein Catalysts. Methods in Enzymology. 580: 191-202. PMID 27586334 DOI: 10.1016/Bs.Mie.2016.05.055  0.729
2016 Makhlynets OV, Korendovych IV. Enzyme design: Functional Frankensteins. Nature Chemistry. 8: 823-4. PMID 27554407 DOI: 10.1038/Nchem.2603  0.734
2016 Makhlynets OV, Gosavi PM, Korendovych IV. Short Self-assembling Peptides are Able to Bind to Copper and Activate Oxygen. Angewandte Chemie (International Ed. in English). PMID 27276534 DOI: 10.1002/Anie.201602480  0.803
2016 Maeda Y, Makhlynets OV, Matsui H, Korendovych IV. Design of Catalytic Peptides and Proteins Through Rational and Combinatorial Approaches. Annual Review of Biomedical Engineering. PMID 27022702 DOI: 10.1146/Annurev-Bioeng-111215-024421  0.729
2015 Moroz YS, Dunston TT, Makhlynets OV, Moroz OV, Wu Y, Yoon JH, Olsen AB, McLaughlin JM, Mack KL, Gosavi PM, Van Nuland NA, Korendovych IV. New Tricks for Old Proteins: Single Mutations in a Non-enzymatic Protein Give Rise to Various Enzymatic Activities. Journal of the American Chemical Society. PMID 26555770 DOI: 10.1021/Jacs.5B07812  0.764
2015 Ridgway Z, Picciano AL, Gosavi PM, Moroz YS, Angevine CE, Chavis AE, Reiner JE, Korendovych IV, Caputo GA. Functional characterization of a melittin analog containing a non-natural tryptophan analog. Biopolymers. PMID 25670241 DOI: 10.1002/Bip.22624  0.782
2015 Gosavi PM, Moroz YS, Korendovych IV. β-(1-Azulenyl)-L-alanine--a functional probe for determination of pKa of histidine residues. Chemical Communications (Cambridge, England). 51: 5347-50. PMID 25645241 DOI: 10.1039/C4Cc08720H  0.762
2015 Makhlynets OV, Raymond EA, Korendovych IV. Design of allosterically regulated protein catalysts Biochemistry. 54: 1444-1456. PMID 25642601 DOI: 10.1021/Bi5015248  0.719
2015 Raymond EA, Mack KL, Yoon JH, Moroz OV, Moroz YS, Korendovych IV. Design of an allosterically regulated retroaldolase. Protein Science : a Publication of the Protein Society. 24: 561-70. PMID 25516403 DOI: 10.1002/Pro.2622  0.793
2015 Shao J, Korendovych IV, Broos J. Biosynthetic incorporation of the azulene moiety in proteins with high efficiency. Amino Acids. 47: 213-6. PMID 25399056 DOI: 10.1007/S00726-014-1870-4  0.303
2014 Korendovych IV, DeGrado WF. Catalytic efficiency of designed catalytic proteins. Current Opinion in Structural Biology. 27: 113-21. PMID 25048695 DOI: 10.1016/J.Sbi.2014.06.006  0.533
2014 Makhlynets OV, Korendovych IV. Design of catalytically amplified sensors for small molecules Biomolecules. 4: 402-418. PMID 24970222 DOI: 10.3390/biom4020402  0.676
2014 Ghosh A, Wang J, Moroz YS, Korendovych IV, Zanni M, DeGrado WF, Gai F, Hochstrasser RM. 2D IR spectroscopy reveals the role of water in the binding of channel-blocking drugs to the influenza M2 channel. The Journal of Chemical Physics. 140: 235105. PMID 24952572 DOI: 10.1063/1.4881188  0.719
2014 Rufo CM, Moroz YS, Moroz OV, Stöhr J, Smith TA, Hu X, DeGrado WF, Korendovych IV. Short peptides self-assemble to produce catalytic amyloids. Nature Chemistry. 6: 303-9. PMID 24651196 DOI: 10.1038/Nchem.1894  0.809
2014 Moroz Y, Wu Y, Nuland Nv, Korendovych I. Calmodulin, C-terminal domain, M144H mutant Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb4Bya/Pdb  0.667
2013 Moroz OV, Moroz YS, Wu Y, Olsen AB, Cheng H, Mack KL, McLaughlin JM, Raymond EA, Zhezherya K, Roder H, Korendovych IV. A single mutation in a regulatory protein produces evolvable allosterically regulated catalyst of nonnatural reaction. Angewandte Chemie (International Ed. in English). 52: 6246-9. PMID 23630096 DOI: 10.1002/Anie.201302339  0.78
2013 Mack KL, Moroz OV, Moroz YS, Olsen AB, McLaughlin JM, Korendovych IV. Reprogramming EF-hands for design of catalytically amplified lanthanide sensors. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 18: 411-8. PMID 23420322 DOI: 10.1007/S00775-013-0985-5  0.775
2013 Moroz YS, Binder W, Nygren P, Caputo GA, Korendovych IV. Painting proteins blue: β-(1-azulenyl)-L-alanine as a probe for studying protein-protein interactions. Chemical Communications (Cambridge, England). 49: 490-2. PMID 23207368 DOI: 10.1039/C2Cc37550H  0.77
2013 Korendovych I, Moroz Y, Wu Y, Cheng H, Roder H. Calmodulin, I85L, F92E, H107I, L107I, A128T, M144R Mutant Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2M3S/Pdb  0.658
2013 Mack KL, Moroz OV, Moroz YS, Olsen AB, McLaughlin JM, Korendovych IV. Erratum to: Reprogramming EF-hands for design of catalytically amplified lanthanide sensors Jbic Journal of Biological Inorganic Chemistry. 18: 591-591. DOI: 10.1007/S00775-013-1001-9  0.757
2012 Godfroy JI, Roostan M, Moroz YS, Korendovych IV, Yin H. Isolated Toll-like receptor transmembrane domains are capable of oligomerization. Plos One. 7: e48875. PMID 23155421 DOI: 10.1371/Journal.Pone.0048875  0.733
2012 Korendovych IV, Shandler SJ, Montalvo GL, Degrado WF. Erratum: Environment- and sequence-dependence of helical type in membrane-spanning peptides composed of β 3-amino acids (Organic Letters (3475)) Organic Letters. 14. DOI: 10.1021/Ol301388F  0.767
2011 Shandler SJ, Korendovych IV, Moore DT, Smith-Dupont KB, Streu CN, Litvinov RI, Billings PC, Gai F, Bennett JS, DeGrado WF. Computational design of a β-peptide that targets transmembrane helices. Journal of the American Chemical Society. 133: 12378-81. PMID 21780757 DOI: 10.1021/Ja204215F  0.798
2011 Korendovych IV, Shandler SJ, Montalvo GL, DeGrado WF. Environment- and sequence-dependence of helical type in membrane-spanning peptides composed of β3-amino acids. Organic Letters. 13: 3474-7. PMID 21651308 DOI: 10.1021/Ol201218Y  0.78
2011 Remorino A, Korendovych IV, Wu Y, DeGrado WF, Hochstrasser RM. Residue-specific vibrational echoes yield 3D structures of a transmembrane helix dimer. Science (New York, N.Y.). 332: 1206-9. PMID 21636774 DOI: 10.1126/Science.1202997  0.483
2011 Korendovych IV, Kulp DW, Wu Y, Cheng H, Roder H, DeGrado WF. Design of a switchable eliminase. Proceedings of the National Academy of Sciences of the United States of America. 108: 6823-7. PMID 21482808 DOI: 10.1073/Pnas.1018191108  0.74
2011 Korendovych I, Kulp D, Wu Y, Cheng H, Roder H, DeGrado W. Calmodulin, C-terminal domain, F92E mutant Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Kz2/Pdb  0.668
2010 Jo H, Culik RM, Korendovych IV, Degrado WF, Gai F. Selective incorporation of nitrile-based infrared probes into proteins via cysteine alkylation. Biochemistry. 49: 10354-6. PMID 21077670 DOI: 10.1021/Bi101711A  0.507
2010 Korendovych IV, Senes A, Kim YH, Lear JD, Fry HC, Therien MJ, Blasie JK, Walker FA, Degrado WF. De novo design and molecular assembly of a transmembrane diporphyrin-binding protein complex. Journal of the American Chemical Society. 132: 15516-8. PMID 20945900 DOI: 10.1021/Ja107487B  0.716
2010 Korendovych IV, Kim YH, Ryan AH, Lear JD, Degrado WF, Shandler SJ. Computational design of a self-assembling β-peptide oligomer. Organic Letters. 12: 5142-5. PMID 20945888 DOI: 10.1021/Ol102092R  0.804
2008 Yang JY, Liu SY, Korendovych IV, Rybak-Akimova EV, Nocera DG. Hangman salen platforms containing dibenzofuran scaffolds. Chemsuschem. 1: 941-9. PMID 18985639 DOI: 10.1002/Cssc.200800099  0.705
2008 Korendovych IV, Cho M, Makhlynets OV, Butler PL, Staples RJ, Rybak-Akimova EV. Anion and carboxylic acid binding to monotopic and ditopic amidopyridine macrocycles Journal of Organic Chemistry. 73: 4771-4782. PMID 18396906 DOI: 10.1021/Jo800128R  0.776
2007 Korendovych IV, Kryatov SV, Rybak-Akimova EV. Dioxygen activation at non-heme iron: insights from rapid kinetic studies. Accounts of Chemical Research. 40: 510-21. PMID 17521158 DOI: 10.1021/Ar600041X  0.769
2007 Company A, Gómez L, Mas-Ballesté R, Korendovych IV, Ribas X, Poater A, Parella T, Fontrodona X, Benet-Buchholz J, Solà M, Que L, Rybak-Akimova EV, Costas M. Fast O2 binding at dicopper complexes containing Schiff-base dinucleating ligands Inorganic Chemistry. 46: 4997-5012. PMID 17500512 DOI: 10.1021/Ic0701108  0.69
2007 Korendovych IV, Kryatova OP, Reiff WM, Rybak-Akimova EV. Iron(II) complexes with amide-containing macrocycles as non-heme porphyrin analogues. Inorganic Chemistry. 46: 4197-211. PMID 17419619 DOI: 10.1021/Ic0701209  0.775
2006 Korendovych IV, Cho M, Butler PL, Staples RJ, Rybak-Akimova EV. Anion binding to monotopic and ditopic macrocyclic amides. Organic Letters. 8: 3171-4. PMID 16836358 DOI: 10.1021/Ol060786R  0.691
2006 Korendovych IV, Makhlynets OV, Buzak SK, Flook MM, Kryatov SV, Haas TE, Rybak-Akimova EV. (1R,2R)-(+)-4,4′-Di-terf-butyl-2,2′-[1,2-diphenyl-ethane-1, 2-diylbis(nitrilomethylidyne)]diphenol Acta Crystallographica Section E: Structure Reports Online. 62: o1240-o1242. DOI: 10.1107/S1600536806007136  0.752
2006 Korendovych IV, Cho M, Butler PL, Staples RJ, Rybak-Akimova EV. Anion binding to monotopic and ditopic macrocyclic amides Organic Letters. 8: 3171-3174. DOI: 10.1021/ol060786r  0.659
2006 Korendovych IV, Roesner RA, Rybak-Akimova EV. Molecular Recognition of Neutral and Charged Guests using Metallomacrocyclic Hosts Advances in Inorganic Chemistry. 59: 109-173. DOI: 10.1016/S0898-8838(06)59004-X  0.693
2005 Korendovych IV, Kryatov SV, Reiff WM, Rybak-Akimova EV. Diiron(II) mu-aqua-mu-hydroxo model for non-heme iron sites in proteins. Inorganic Chemistry. 44: 8656-8. PMID 16296818 DOI: 10.1021/Ic051739I  0.771
2005 Kryatov SV, Taktak S, Korendovych IV, Rybak-Akimova EV, Kaizer J, Torelli S, Shan X, Mandal S, MacMurdo VL, Mairata i Payeras A, Que L. Dioxygen binding to complexes with Fe(II)2(mu-OH)2 cores: steric control of activation barriers and O2-adduct formation. Inorganic Chemistry. 44: 85-99. PMID 15627364 DOI: 10.1021/Ic0485312  0.776
2004 Korendovych IV, Staples RJ, Reiff WM, Rybak-Akimova EV. A new high-spin iron(III) complex with a pentadentate macrocyclic amidopyridine ligand: a change from slow single-ion paramagnetic relaxation to long-range antiferromagnetic order in a hydrogen-bonded network. Inorganic Chemistry. 43: 3930-41. PMID 15206874 DOI: 10.1021/Ic0351601  0.694
2004 Korendovych IV, Rybak-Akimova EV. Chloro[2,2'-[(1S,2S)-1,2-diphenyl-1,2-ethanediylbis(nitrilomethylidyne)]diphenolato-kappa4O,N,N',O'](ethanol-kappaO)manganese(III). Acta Crystallographica. Section C, Crystal Structure Communications. 60: m82-4. PMID 14767121 DOI: 10.1107/S0108270104000204  0.675
2004 Korendovych IV, Rybak-Akimova EV. Chloro{2,2′-[1S,2S)-1,2-diphenyl-1, 2-ethanediylbis(nitrilomethylidyne)]-diphenolato-κ 4O,N,N′,O′}(ethanol-κO)manganese(III) Acta Crystallographica Section C: Crystal Structure Communications. 60: m82-m84. DOI: 10.1107/S0108270104000204  0.634
2004 Korendovych IV, Staples RJ, Reiff WM, Rybak-Akimova EV. A new high-spin iron(III) complex with a pentadentate macrocyclic amidopyridine ligand: A change from slow single-ion paramagnetic relaxation to long-range antiferromagnetic order in a hydrogen-bonded network Inorganic Chemistry. 43: 3930-3941. DOI: 10.1021/ic0351601  0.661
2004 Kryatova OP, Korendovych IV, Rybak-Akimova EV. Complexes of benzo-15-crown-5 with protonated primary amines and diamines Tetrahedron. 60: 4579-4588. DOI: 10.1016/J.Tet.2004.03.080  0.759
2003 Korendovych IV, Rybak-Akimova EV. (-)-(1S,2S)-N,N′-Bis(salicylidene)-1,2-diphenyl-1,2-ethanediamine Acta Crystallographica Section E: Structure Reports Online. 59: o1498-o1500. DOI: 10.1107/S1600536803019603  0.673
2003 Herrera AM, Kalayda GV, Disch JS, Wikstrom JP, Korendovych IV, Staples RJ, Campana CF, Nazarenko AY, Haas TE, Rybak-Akimova EV. Reactions at the azomethine C=N bonds in the nickel(II) and copper(II) complexes of pyridine-containing Schiff-base macrocyclic ligands Dalton Transactions. 4482-4492. DOI: 10.1039/B308557K  0.76
2003 Kryatova OP, Korendovych IV, Rybak-Akimova EV. Proton-induced supramolecular dimerization of aminomethylbenzo-15-crown-5 accompanied by a covalent dimerization of cyanoborohydride anion Tetrahedron Letters. 44: 4251-4255. DOI: 10.1016/S0040-4039(03)00894-3  0.778
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