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Peter Minary, Ph.D.

Affiliations: 
2005 New York University, New York, NY, United States 
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"Peter Minary"
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Parents

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Mark E. Tuckerman grad student 2005 NYU
 (Novel methodology developments in modern molecular simulations.)
Michael Levitt post-doc Stanford

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Publications

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Chang JY, Cui Z, Yang K, et al. (2020) Hierarchical Natural Move Monte Carlo Refines Flexible RNA Structures into Cryo-EM Densities. Rna (New York, N.Y.)
Demharter S, Knapp B, Deane CM, et al. (2016) Modeling Functional Motions of Biological Systems by Customized Natural Moves. Biophysical Journal. 111: 710-21
Minary P, Levitt M. (2014) Training-free atomistic prediction of nucleosome occupancy. Proceedings of the National Academy of Sciences of the United States of America. 111: 6293-8
Zhang J, Minary P, Levitt M. (2012) Multiscale natural moves refine macromolecules using single-particle electron microscopy projection images. Proceedings of the National Academy of Sciences of the United States of America. 109: 9845-50
Sim AY, Minary P, Levitt M. (2012) Modeling nucleic acids. Current Opinion in Structural Biology. 22: 273-8
Sim AY, Levitt M, Minary P. (2012) Modeling and design by hierarchical natural moves. Proceedings of the National Academy of Sciences of the United States of America. 109: 2890-5
Minary P, Levitt M. (2010) Conformational optimization with natural degrees of freedom: a novel stochastic chain closure algorithm. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 993-1010
Minary P, Levitt M. (2008) Probing protein fold space with a simplified model. Journal of Molecular Biology. 375: 920-33
Minary P, Tuckerman ME, Martyna GJ. (2007) Dynamical spatial warping: A novel method for the conformational sampling of biophysical structure Siam Journal On Scientific Computing. 30: 2055-2083
Minary P, Levitt M. (2006) Discussion of "equi-energy sampler" by Kou, Zhou and Wong Annals of Statistics. 34: 1636-1641
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