Ryan D. Brenke, Ph.D.
Affiliations: | 2009 | Boston University, Boston, MA, United States |
Area:
Biomedical EngineeringGoogle:
"Ryan Brenke"Parents
Sign in to add mentor| Sandor Vajda | grad student | 2009 | Boston University | |
| (Efficient algorithms for modeling macromolecular interactions.) | ||||
BETA: Related publications
See more...
Publications
|
You can help our author matching system! If you notice any publications incorrectly attributed to this author, please sign in and mark matches as correct or incorrect. |
| Bohnuud T, Beglov D, Ngan C, et al. (2013) 89 Computational mapping reveals effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde Journal of Biomolecular Structure and Dynamics. 31: 57-57 |
| Brenke R, Hall DR, Chuang GY, et al. (2012) Application of asymmetric statistical potentials to antibody-protein docking. Bioinformatics (Oxford, England). 28: 2608-14 |
| Bohnuud T, Beglov D, Ngan CH, et al. (2012) Computational mapping reveals dramatic effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde. Nucleic Acids Research. 40: 7644-52 |
| Beglov D, Hall DR, Brenke R, et al. (2012) Minimal ensembles of side chain conformers for modeling protein-protein interactions. Proteins. 80: 591-601 |
| Kozakov D, Hall DR, Chuang GY, et al. (2011) Structural conservation of druggable hot spots in protein-protein interfaces. Proceedings of the National Academy of Sciences of the United States of America. 108: 13528-33 |
| Kozakov D, Hall DR, Beglov D, et al. (2010) Achieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19. Proteins. 78: 3124-30 |
| Chuang GY, Kozakov D, Brenke R, et al. (2009) Binding hot spots and amantadine orientation in the influenza a virus M2 proton channel. Biophysical Journal. 97: 2846-53 |
| Beglov D, Lee CJ, De Biasio A, et al. (2009) Structural insights into recognition of beta2-glycoprotein I by the lipoprotein receptors. Proteins. 77: 940-9 |
| Landon MR, Lieberman RL, Hoang QQ, et al. (2009) Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1 and glucocerebrosidase. Journal of Computer-Aided Molecular Design. 23: 491-500 |
| Brenke R, Kozakov D, Chuang GY, et al. (2009) Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques. Bioinformatics (Oxford, England). 25: 621-7 |