Trevor M. Cickovski, Ph.D.
Affiliations: | 2008 | University of Notre Dame, Notre Dame, IN, United States |
Area:
Computer Science, Cell Biology, Molecular PhysicsGoogle:
"Trevor Cickovski"Parents
Sign in to add mentor| Jesus A. Izaguirre | grad student | 2008 | Notre Dame | |
| (Interacting domain-specific languages with biological problem solving environments.) | ||||
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Publications
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| Cickovski T, Aguiar-Pulido V, Narasimhan G. (2019) MATria: a unified centrality algorithm. Bmc Bioinformatics. 20: 278 |
| Cickovski T, Narasimhan G. (2018) Constructing Lightweight And Flexible Pipelines Using Plugin-Based Microbiome Analysis (PluMA). Bioinformatics (Oxford, England) |
| Cickovski T, Flor T, Irving-Sachs G, et al. (2015) GPUDePiCt: A Parallel Implementation of a Clustering Algorithm for Computing Degenerate Primers on Graphics Processing Units. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 445-54 |
| Sweet JC, Nowling RJ, Cickovski T, et al. (2013) Long Timestep Molecular Dynamics on the Graphical Processing Unit. Journal of Chemical Theory and Computation. 9: 3267-3281 |
| Margolin G, Gregoretti IV, Cickovski TM, et al. (2012) The mechanisms of microtubule catastrophe and rescue: implications from analysis of a dimer-scale computational model. Molecular Biology of the Cell. 23: 642-56 |
| Cickovski T, Chatterjee S, Wenger J, et al. (2010) MDLab: a molecular dynamics simulation prototyping environment. Journal of Computational Chemistry. 31: 1345-56 |
| Cickovski T, Aras K, Alber MS, et al. (2007) From Genes to Organisms Via the Cell A Problem-Solving Environment for Multicellular Development. Computing in Science & Engineering. 9: 50-60 |
| Cickovski T, Sweet C, Izaguirre JA. (2007) MDL, A domain-specific language for molecular dynamics Proceedings - Simulation Symposium. 256-264 |
| Cickovski TM, Huang C, Chaturvedi R, et al. (2005) A framework for three-dimensional simulation of morphogenesis. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 2: 273-88 |
| Izaguirre JA, Chaturvedi R, Huang C, et al. (2004) CompuCell, a multi-model framework for simulation of morphogenesis. Bioinformatics (Oxford, England). 20: 1129-37 |