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Jason D. Russell, Ph.D. - Publications

Affiliations: 
2012 Chemistry University of Wisconsin, Madison, Madison, WI 
Area:
Bioanalytical Chemistry, Mass Spectrometry & Proteomics
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Zhang Q, Linke V, Overmyer KA, Traeger LL, Kasahara K, Miller IJ, Manson DE, Polaske TJ, Kerby RL, Kemis JH, Trujillo EA, Reddy TR, Russell JD, Schueler KL, Stapleton DS, et al. Author Correction: Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut. Nature Microbiology. PMID 36973420 DOI: 10.1038/s41564-023-01366-2  0.747
2023 Zhang Q, Linke V, Overmyer KA, Traeger LL, Kasahara K, Miller IJ, Manson DE, Polaske TJ, Kerby RL, Kemis JH, Trujillo EA, Reddy TR, Russell JD, Schueler KL, Stapleton DS, et al. Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut. Nature Microbiology. PMID 36759753 DOI: 10.1038/s41564-023-01326-w  0.759
2021 Robinson KP, Jochem A, Johnson SE, Reddy TR, Russell JD, Coon JJ, Pagliarini DJ. Defining intermediates and redundancies in coenzyme Q precursor biosynthesis. The Journal of Biological Chemistry. 100643. PMID 33862086 DOI: 10.1016/j.jbc.2021.100643  0.476
2021 Lee W, Kingstad-Bakke B, Paulson B, Larsen A, Overmyer K, Marinaik CB, Dulli K, Toy R, Vogel G, Mueller KP, Tweed K, Walsh AJ, Russell J, Saha K, Reyes L, et al. Carbomer-based adjuvant elicits CD8 T-cell immunity by inducing a distinct metabolic state in cross-presenting dendritic cells. Plos Pathogens. 17: e1009168. PMID 33444400 DOI: 10.1371/journal.ppat.1009168  0.421
2020 Linke V, Overmyer KA, Miller IJ, Brademan DR, Hutchins PD, Trujillo EA, Reddy TR, Russell JD, Cushing EM, Schueler KL, Stapleton DS, Rabaglia ME, Keller MP, Gatti DM, Keele GR, et al. A large-scale genome-lipid association map guides lipid identification. Nature Metabolism. PMID 32958938 DOI: 10.1038/s42255-020-00278-3  0.764
2020 Karlen SD, Fasahati P, Mazaheri M, Serate J, Smith RA, Sirobhushanam S, Chen M, Tymokhin VI, Cass CL, Liu S, Padmakshan D, Xie D, Zhang Y, McGee MA, Russell JD, et al. Assessing the Viability of Recovery of Hydroxycinnamic Acids from Lignocellulosic Biorefinery Alkaline Pretreatment Waste Streams. Chemsuschem. PMID 32285625 DOI: 10.1002/Cssc.202000820  0.38
2020 Karlen SD, Fasahati P, Mazaheri M, Serate J, Smith RA, Sirobhushanam S, Chen M, Tymkhin VI, Cass CL, Liu S, Padmakshan D, Xie D, Zhang Y, McGee MA, Russell JD, et al. Assessing the viability of recovering hydroxycinnamic acids from lignocellulosic biorefinery alkaline pretreatment waste streams. Chemsuschem. PMID 31984673 DOI: 10.1002/cssc.201903345  0.392
2020 Karlen SD, Fasahati P, Mazaheri M, Serate J, Smith RA, Sirobhushanam S, Chen M, Tymokhin VI, Cass CL, Liu S, Padmakshan D, Xie D, Zhang Y, McGee MA, Russell JD, et al. Front Cover: Assessing the Viability of Recovery of Hydroxycinnamic Acids from Lignocellulosic Biorefinery Alkaline Pretreatment Waste Streams (ChemSusChem 8/2020) Chemsuschem. 13: 1918-1918. DOI: 10.1002/Cssc.202000821  0.377
2019 Zhang Y, Vera JM, Xie D, Serate J, Pohlmann E, Russell JD, Hebert AS, Coon JJ, Sato TK, Landick R. Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in . Frontiers in Microbiology. 10: 2596. PMID 31787963 DOI: 10.3389/Fmicb.2019.02596  0.647
2019 Kemis JH, Linke V, Barrett KL, Boehm FJ, Traeger LL, Keller MP, Rabaglia ME, Schueler KL, Stapleton DS, Gatti DM, Churchill GA, Amador-Noguez D, Russell JD, Yandell BS, Broman KW, et al. Genetic determinants of gut microbiota composition and bile acid profiles in mice. Plos Genetics. 15: e1008073. PMID 31465442 DOI: 10.1371/Journal.Pgen.1008073  0.749
2019 Hutchins PD, Russell JD, Coon JJ. Accelerating Lipidomic Method Development through in silico Simulation. Analytical Chemistry. PMID 31298839 DOI: 10.1021/Acs.Analchem.9B01234  0.496
2019 Hutchins PD, Russell JD, Coon JJ. Mapping Lipid Fragmentation for Tailored Mass Spectral Libraries. Journal of the American Society For Mass Spectrometry. PMID 30756325 DOI: 10.1007/S13361-018-02125-Y  0.536
2019 Strekalova E, Malin D, Weisenhorn EMM, Russell JD, Hoelper D, Jain A, Coon JJ, Lewis PW, Cryns VL. S-adenosylmethionine biosynthesis is a targetable metabolic vulnerability of cancer stem cells. Breast Cancer Research and Treatment. PMID 30712196 DOI: 10.1007/S10549-019-05146-7  0.448
2019 Subramanian K, Jochem A, Le Vasseur M, Lewis S, Paulson BR, Reddy TR, Russell JD, Coon JJ, Pagliarini DJ, Nunnari J. Coenzyme Q biosynthetic proteins assemble in a substrate-dependent manner into domains at ER-mitochondria contacts. The Journal of Cell Biology. PMID 30674579 DOI: 10.1083/Jcb.201808044  0.499
2019 Lohman DC, Aydin D, Von Bank HC, Smith RW, Linke V, Weisenhorn E, McDevitt MT, Hutchins P, Wilkerson EM, Wancewicz B, Russell J, Stefely MS, Beebe ET, Jochem A, Coon JJ, et al. An Isoprene Lipid-Binding Protein Promotes Eukaryotic Coenzyme Q Biosynthesis. Molecular Cell. PMID 30661980 DOI: 10.1016/j.molcel.2018.11.033  0.74
2018 Wang Y, Weisenhorn E, MacDiarmid CW, Andreini C, Bucci M, Taggart J, Banci L, Russell J, Coon JJ, Eide DJ. The cellular economy of the Saccharomyces cerevisiae zinc proteome. Metallomics : Integrated Biometal Science. PMID 30358795 DOI: 10.1039/C8Mt00269J  0.486
2018 Taggart J, Wang Y, Weisenhorn E, MacDiarmid CW, Russell J, Coon JJ, Eide DJ. The GIS2 Gene Is Repressed by a Zinc-Regulated Bicistronic RNA in Saccharomyces cerevisiae. Genes. 9. PMID 30235899 DOI: 10.3390/Genes9090462  0.377
2018 Hutchins PD, Russell JD, Coon JJ. LipiDex: An Integrated Software Package for High-Confidence Lipid Identification. Cell Systems. PMID 29705063 DOI: 10.1016/J.Cels.2018.03.011  0.534
2018 Bucci MD, Weisenhorn E, Haws S, Yao Z, Zimmerman G, Gannon M, Taggart J, Lee T, Klionsky DJ, Russell J, Coon J, Eide DJ. An Autophagy-Independent Role for ATG41 in Sulfur Metabolism During Zinc Deficiency. Genetics. PMID 29321173 DOI: 10.1534/Genetics.117.300679  0.466
2017 Veling MT, Reidenbach AG, Freiberger EC, Kwiecien NW, Hutchins PD, Drahnak MJ, Jochem A, Ulbrich A, Rush MJP, Russell JD, Coon JJ, Pagliarini DJ. Multi-omic Mitoprotease Profiling Defines a Role for Oct1p in Coenzyme Q Production. Molecular Cell. 68: 970-977.e11. PMID 29220658 DOI: 10.1016/J.Molcel.2017.11.023  0.485
2017 Guo X, Niemi NM, Hutchins PD, Condon SG, Jochem A, Ulbrich A, Higbee AJ, Russell JD, Senes A, Coon JJ, Pagliarini DJ. Ptc7p Dephosphorylates Select Mitochondrial Proteins to Enhance Metabolic Function. Cell Reports. 18: 307-313. PMID 28076776 DOI: 10.1016/J.Celrep.2016.12.049  0.491
2017 Darst BF, Rush MJ, Hutchins PD, Reddy TR, Russell JD, Gangnon R, Koscik RL, Asthana S, Johnson SC, Hogan KJ, Coon JJ, Engelman CD. PRELIMINARY FINDINGS FROM AN ONGOING LONGITUDINAL METABOLOME-WIDE ASSOCIATION STUDY OF COGNITIVE DECLINE IN HEALTHY ADULTS WITH INCREASED RISK FOR ALZHEIMER’S DISEASE Alzheimer's & Dementia. 13: P551-P552. DOI: 10.1016/J.Jalz.2017.07.149  0.422
2016 Kuang MC, Hutchins PD, Russell JD, Coon JJ, Hittinger CT. Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network. Elife. 5. PMID 27690225 DOI: 10.7554/Elife.19027  0.483
2016 Kuang MC, Hutchins PD, Russell JD, Coon JJ, Hittinger CT. Author response: Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network Elife. DOI: 10.7554/Elife.19027.028  0.456
2014 Brumbaugh J, Russell JD, Yu P, Westphall MS, Coon JJ, Thomson JA. NANOG Is Multiply Phosphorylated and Directly Modified by ERK2 and CDK1 In Vitro. Stem Cell Reports. 2: 18-25. PMID 28039751 DOI: 10.1016/j.stemcr.2013.12.005  0.644
2014 Brumbaugh J, Russell JD, Yu P, Westphall MS, Coon JJ, Thomson JA. NANOG is multiply phosphorylated and directly modified by ERK2 and CDK1 in vitro. Stem Cell Reports. 2: 18-25. PMID 24678451 DOI: 10.1016/J.Stemcr.2013.12.005  0.659
2013 Rose CM, Russell JD, Ledvina AR, McAlister GC, Westphall MS, Griep-Raming J, Schwartz JC, Coon JJ, Syka JE. Multipurpose dissociation cell for enhanced ETD of intact protein species. Journal of the American Society For Mass Spectrometry. 24: 816-27. PMID 23609185 DOI: 10.1007/S13361-013-0622-0  0.736
2013 Russell JD, Scalf M, Book AJ, Ladror DT, Vierstra RD, Smith LM, Coon JJ. Characterization and quantification of intact 26S proteasome proteins by real-time measurement of intrinsic fluorescence prior to top-down mass spectrometry. Plos One. 8: e58157. PMID 23536786 DOI: 10.1371/Journal.Pone.0058157  0.54
2012 Yang C, Park AC, Davis NA, Russell JD, Kim B, Brand DD, Lawrence MJ, Ge Y, Westphall MS, Coon JJ, Greenspan DS. Comprehensive mass spectrometric mapping of the hydroxylated amino acid residues of the α1(V) collagen chain. The Journal of Biological Chemistry. 287: 40598-610. PMID 23060441 DOI: 10.1074/Jbc.M112.406850  0.496
2012 Peterson AC, Russell JD, Bailey DJ, Westphall MS, Coon JJ. Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics. Molecular & Cellular Proteomics : McP. 11: 1475-88. PMID 22865924 DOI: 10.1074/Mcp.O112.020131  0.728
2012 Brumbaugh J, Hou Z, Russell JD, Howden SE, Yu P, Ledvina AR, Coon JJ, Thomson JA. Phosphorylation regulates human OCT4. Proceedings of the National Academy of Sciences of the United States of America. 109: 7162-8. PMID 22474382 DOI: 10.1073/Pnas.1203874109  0.737
2012 McAlister GC, Russell JD, Rumachik NG, Hebert AS, Syka JE, Geer LY, Westphall MS, Pagliarini DJ, Coon JJ. Analysis of the acidic proteome with negative electron-transfer dissociation mass spectrometry. Analytical Chemistry. 84: 2875-82. PMID 22335612 DOI: 10.1021/Ac203430U  0.761
2012 Rumachik NG, McAlister GC, Russell JD, Bailey DJ, Wenger CD, Coon JJ. Characterizing peptide neutral losses induced by negative electron-transfer dissociation (NETD). Journal of the American Society For Mass Spectrometry. 23: 718-27. PMID 22290482 DOI: 10.1007/S13361-011-0331-5  0.734
2011 Russell JD, Hilger RT, Ladror DT, Tervo MA, Scalf M, Shortreed MR, Coon JJ, Smith LM. Parallel detection of intrinsic fluorescence from peptides and proteins for quantification during mass spectrometric analysis. Analytical Chemistry. 83: 2187-93. PMID 21314137 DOI: 10.1021/Ac103023Q  0.521
2009 Second TP, Blethrow JD, Schwartz JC, Merrihew GE, MacCoss MJ, Swaney DL, Russell JD, Coon JJ, Zabrouskov V. Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures. Analytical Chemistry. 81: 7757-65. PMID 19689114 DOI: 10.1021/Ac901278Y  0.694
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