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Andrew J. Nieuwkoop, Ph.D. - Publications

Affiliations: 
2011 Chemistry University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
solid-state NMR to interrogate the structures of integral and peripheral membrane proteins
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Bernstein AD, Asante Ampadu GA, Yang Y, Acharya GR, Osborn Popp TM, Nieuwkoop AJ. Effects of Ca on the Structure and Dynamics of PIP in Model Membranes Containing PC and PS. Biochemistry. 64: 127-137. PMID 39656263 DOI: 10.1021/acs.biochem.4c00513  0.788
2024 Bernstein AD, Yang Y, Osborn Popp TM, Ampadu GA, Acharya GR, Nieuwkoop AJ. Effects of Ca on the Structure and Dynamics of PIP3 in Model Membranes Containing PC and PS. Biorxiv : the Preprint Server For Biology. PMID 38854128 DOI: 10.1101/2024.05.28.596302  0.787
2023 Osborn Popp TM, Matchett BT, Green RG, Chhabra I, Mumudi S, Bernstein AD, Perodeau JR, Nieuwkoop AJ. 3D-Printable centrifugal devices for biomolecular solid state NMR rotors. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 354: 107524. PMID 37481918 DOI: 10.1016/j.jmr.2023.107524  0.787
2023 Perodeau J, Arbogast LW, Nieuwkoop AJ. Solid-State NMR Characterization of Lyophilized Formulations of Monoclonal Antibody Therapeutics. Molecular Pharmaceutics. PMID 36702622 DOI: 10.1021/acs.molpharmaceut.2c00676  0.31
2021 Velasco E, Xian S, Wang H, Teat SJ, Olson DH, Tan K, Ullah S, Osborn Popp TM, Bernstein AD, Oyekan KA, Nieuwkoop AJ, Thonhauser T, Li J. Flexible Zn-MOF with Rare Underlying Topology for Effective Separation of C6 Alkane Isomers. Acs Applied Materials & Interfaces. PMID 34283555 DOI: 10.1021/acsami.1c08678  0.761
2020 Friedrich D, Perodeau J, Nieuwkoop AJ, Oschkinat H. MAS NMR detection of hydrogen bonds for protein secondary structure characterization. Journal of Biomolecular Nmr. PMID 32185644 DOI: 10.1007/S10858-020-00307-Z  0.542
2020 Hernando M, Orris G, Perodeau J, Lei S, Ferens FG, Patel TR, Stetefeld J, Nieuwkoop AJ, O'Neil JD. Solution structure and oligomeric state of the E. coli glycerol facilitator. Biochimica Et Biophysica Acta. Biomembranes. 183191. PMID 31953232 DOI: 10.1016/J.Bbamem.2020.183191  0.379
2020 Friedrich D, Brünig FN, Nieuwkoop AJ, Netz RR, Hegemann P, Oschkinat H. Collective exchange processes reveal an active site proton cage in bacteriorhodopsin. Communications Biology. 3: 4. PMID 31925324 DOI: 10.1038/s42003-019-0733-7  0.504
2017 Retel JS, Nieuwkoop AJ, Hiller M, Higman VA, Barbet-Massin E, Stanek J, Andreas LB, Franks WT, van Rossum BJ, Vinothkumar KR, Handel L, de Palma GG, Bardiaux B, Pintacuda G, Emsley L, et al. Structure of outer membrane protein G in lipid bilayers. Nature Communications. 8: 2073. PMID 29233991 DOI: 10.1038/S41467-017-02228-2  0.612
2017 Retel J, Nieuwkoop A, Hiller M, Higman V, Barbet-Massin E, Stanek J, Andreas L, Franks W, vRB-,, Vinothkumar K, Handel L, Palma Gd, Bardiaux B, Pintacuda G, Emsley L, et al. Solid-state NMR Structure of outer membrane protein G in lipid bilayers Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr34088  0.61
2016 Tuttle MD, Comellas G, Nieuwkoop AJ, Covell DJ, Berthold DA, Kloepper KD, Courtney JM, Kim JK, Barclay AM, Kendall A, Wan W, Stubbs G, Schwieters CD, Lee VM, George JM, et al. Solid-state NMR structure of a pathogenic fibril of full-length human α-synuclein. Nature Structural & Molecular Biology. PMID 27018801 DOI: 10.1038/Nsmb.3194  0.789
2016 Tuttle M, Comellas G, Nieuwkoop A, Covell D, Berthold D, Kloepper K, Courtney J, Kim J, Schwieters C, Lee V, George J, Rienstra C. Atomic-resolution structure of alpha-synuclein fibrils Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr25518  0.774
2015 Nieuwkoop AJ, Franks WT, Rehbein K, Diehl A, Akbey Ü, Engelke F, Emsley L, Pintacuda G, Oschkinat H. Sensitivity and resolution of proton detected spectra of a deuterated protein at 40 and 60 kHz magic-angle-spinning. Journal of Biomolecular Nmr. 61: 161-71. PMID 25663049 DOI: 10.1007/S10858-015-9904-0  0.802
2014 Barbet-Massin E, Pell AJ, Retel JS, Andreas LB, Jaudzems K, Franks WT, Nieuwkoop AJ, Hiller M, Higman V, Guerry P, Bertarello A, Knight MJ, Felletti M, Le Marchand T, Kotelovica S, et al. Rapid proton-detected NMR assignment for proteins with fast magic angle spinning. Journal of the American Chemical Society. 136: 12489-97. PMID 25102442 DOI: 10.1021/Ja507382J  0.806
2014 Anderson TM, Clay MC, Cioffi AG, Diaz KA, Hisao GS, Tuttle MD, Nieuwkoop AJ, Comellas G, Maryum N, Wang S, Uno BE, Wildeman EL, Gonen T, Rienstra CM, Burke MD. Amphotericin forms an extramembranous and fungicidal sterol sponge. Nature Chemical Biology. 10: 400-6. PMID 24681535 DOI: 10.1038/Nchembio.1496  0.538
2014 Akbey Ü, Nieuwkoop AJ, Wegner S, Voreck A, Kunert B, Bandara P, Engelke F, Nielsen NC, Oschkinat H. Quadruple-resonance magic-angle spinning NMR spectroscopy of deuterated solid proteins. Angewandte Chemie (International Ed. in English). 53: 2438-42. PMID 24474388 DOI: 10.1002/Anie.201308927  0.794
2012 Zhou DH, Nieuwkoop AJ, Berthold DA, Comellas G, Sperling LJ, Tang M, Shah GJ, Brea EJ, Lemkau LR, Rienstra CM. Solid-state NMR analysis of membrane proteins and protein aggregates by proton detected spectroscopy. Journal of Biomolecular Nmr. 54: 291-305. PMID 22986689 DOI: 10.1007/S10858-012-9672-Z  0.804
2012 Zhou D, Nieuwkoop A, Berthold D, Comellas G, Sperling L, Tang M, Shah G, Brea E, Lemkau L, Rienstra C. Chemical shift assignments of deuterated DsbB by 1H-detected solid-state NMR Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr18395  0.781
2012 Zhou D, Nieuwkoop A, Comellas G, Rienstra C. WT AS fibrils (1H detection experiments) Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr18243  0.572
2011 Wylie BJ, Sperling LJ, Nieuwkoop AJ, Franks WT, Oldfield E, Rienstra CM. Ultrahigh resolution protein structures using NMR chemical shift tensors. Proceedings of the National Academy of Sciences of the United States of America. 108: 16974-9. PMID 21969532 DOI: 10.1073/Pnas.1103728108  0.796
2011 Tang M, Sperling LJ, Berthold DA, Schwieters CD, Nesbitt AE, Nieuwkoop AJ, Gennis RB, Rienstra CM. High-resolution membrane protein structure by joint calculations with solid-state NMR and X-ray experimental data. Journal of Biomolecular Nmr. 51: 227-33. PMID 21938394 DOI: 10.1007/S10858-011-9565-6  0.8
2011 Comellas G, Lemkau LR, Nieuwkoop AJ, Kloepper KD, Ladror DT, Ebisu R, Woods WS, Lipton AS, George JM, Rienstra CM. Structured regions of α-synuclein fibrils include the early-onset Parkinson's disease mutation sites. Journal of Molecular Biology. 411: 881-95. PMID 21718702 DOI: 10.1016/J.Jmb.2011.06.026  0.761
2011 Comellas G, Lopez JJ, Nieuwkoop AJ, Lemkau LR, Rienstra CM. Straightforward, effective calibration of SPINAL-64 decoupling results in the enhancement of sensitivity and resolution of biomolecular solid-state NMR. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 209: 131-5. PMID 21296014 DOI: 10.1016/J.Jmr.2010.12.011  0.786
2011 Boettcher JM, Davis-Harrison RL, Clay MC, Nieuwkoop AJ, Ohkubo YZ, Tajkhorshid E, Morrissey JH, Rienstra CM. Atomic view of calcium-induced clustering of phosphatidylserine in mixed lipid bilayers. Biochemistry. 50: 2264-73. PMID 21294564 DOI: 10.1021/Bi1013694  0.793
2011 Tang M, Sperling L, Berthold D, Schwieters C, Nesbitt A, Nieuwkoop A, Gennis R, Rienstra C. Membrane protein complex DsbB-DsbA structure by joint calculations with solid-state NMR and X-ray experimental data Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Leg/Pdb  0.793
2011 Comellas G, Lemkau L, Nieuwkoop A, Kloepper K, Ladror D, Ebisu R, Woods W, Lipton A, George J, Rienstra C. Partial 13C, 15N chemical shift assignments of A53T alpha-synuclein fibrils Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr17649  0.759
2011 Comellas G, Kloepper K, Nieuwkoop A, Lemkau L, Ladror D, Ebisu R, Woods W, Lipton A, George J, Rienstra C. WT alpha-synuclein fibrils Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr16939  0.73
2010 Kijac A, Shih AY, Nieuwkoop AJ, Schulten K, Sligar SG, Rienstra CM. Lipid-protein correlations in nanoscale phospholipid bilayers determined by solid-state nuclear magnetic resonance. Biochemistry. 49: 9190-8. PMID 20804175 DOI: 10.1021/Bi1013722  0.642
2010 Nielsen AB, Straasø LA, Nieuwkoop AJ, Rienstra CM, Bjerring M, Nielsen NC. Broadband Heteronuclear Solid-State NMR Experiments by Exponentially Modulated Dipolar Recoupling without Decoupling. The Journal of Physical Chemistry Letters. 1: 1952-1956. PMID 20689682 DOI: 10.1021/Jz100564J  0.653
2010 Nieuwkoop AJ, Rienstra CM. Supramolecular protein structure determination by site-specific long-range intermolecular solid state NMR spectroscopy. Journal of the American Chemical Society. 132: 7570-1. PMID 20465251 DOI: 10.1021/Ja100992Y  0.646
2010 Sperling LJ, Nieuwkoop AJ, Lipton AS, Berthold DA, Rienstra CM. High resolution NMR spectroscopy of nanocrystalline proteins at ultra-high magnetic field. Journal of Biomolecular Nmr. 46: 149-55. PMID 19953303 DOI: 10.1007/S10858-009-9389-9  0.811
2009 Nieuwkoop AJ, Wylie BJ, Franks WT, Shah GJ, Rienstra CM. Atomic resolution protein structure determination by three-dimensional transferred echo double resonance solid-state nuclear magnetic resonance spectroscopy. The Journal of Chemical Physics. 131: 095101. PMID 19739873 DOI: 10.1063/1.3211103  0.815
2008 Franks WT, Wylie BJ, Schmidt HL, Nieuwkoop AJ, Mayrhofer RM, Shah GJ, Graesser DT, Rienstra CM. Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR. Proceedings of the National Academy of Sciences of the United States of America. 105: 4621-6. PMID 18344321 DOI: 10.1073/Pnas.0712393105  0.815
2007 Graesser DT, Wylie BJ, Nieuwkoop AJ, Franks WT, Rienstra CM. Long-range 19F-15N distance measurements in highly-13C, 15N-enriched solid proteins with 19F-dephased REDOR shift (FRESH) spectroscopy. Magnetic Resonance in Chemistry : Mrc. 45: S129-34. PMID 18157807 DOI: 10.1002/Mrc.2126  0.789
2007 Zhou DH, Shea JJ, Nieuwkoop AJ, Franks WT, Wylie BJ, Mullen C, Sandoz D, Rienstra CM. Solid-state protein-structure determination with proton-detected triple-resonance 3D magic-angle-spinning NMR spectroscopy. Angewandte Chemie (International Ed. in English). 46: 8380-3. PMID 17907259 DOI: 10.1002/Anie.200702905  0.83
2007 Zhou D, Shea J, Nieuwkoop A, Franks WT, Wylie B, Mullen C, Sandoz D, Rienstra C. Solid-State Protein Structure Determination with Proton-Detected TripleResonance 3D Magic-Angle Spinning NMR Spectroscopy: Beta-1 ImmunoglobulinBinding Domain of Protein G (GB1) Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr15156  0.726
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