| Year |
Citation |
Score |
| 2024 |
Douglas J, Cui H, Perona JJ, Vargas-Rodriguez O, Tyynismaa H, Carreño CA, Ling J, Ribas de Pouplana L, Yang XL, Ibba M, Becker H, Fischer F, Sissler M, Carter CW, Wills PR. AARS Online: A collaborative database on the structure, function, and evolution of the aminoacyl-tRNA synthetases. Iubmb Life. PMID 39247978 DOI: 10.1002/iub.2911 |
0.8 |
|
| 2022 |
Gottfried-Lee I, Perona JJ, Karplus PA, Mehl RA, Cooley RB. Structures of Pyrrolysine tRNA-Synthetases Support the Need for De Novo Selections When Altering the Substrate Specificity. Acs Chemical Biology. PMID 36395426 DOI: 10.1021/acschembio.2c00640 |
0.449 |
|
| 2022 |
Avila-Crump S, Hemshorn ML, Jones CM, Mbengi L, Meyer K, Griffis JA, Jana S, Petrina GE, Pagar VV, Karplus PA, Petersson EJ, Perona JJ, Mehl RA, Cooley RB. Generating Efficient Pyrrolysyl-tRNA Synthetases for Structurally Diverse Non-Canonical Amino Acids. Acs Chemical Biology. PMID 36383641 DOI: 10.1021/acschembio.2c00639 |
0.4 |
|
| 2018 |
Miller DV, Rauch BJ, Harich K, Xu H, Perona JJ, White RH. Promiscuity of methionine salvage pathway enzymes in Methanocaldococcus jannaschii. Microbiology (Reading, England). PMID 29877790 DOI: 10.1099/Mic.0.000670 |
0.411 |
|
| 2017 |
Sungwienwong I, Hostetler ZM, Blizzard RJ, Porter JJ, Driggers CM, Mbengi LZ, Villegas JA, Speight LC, Saven JG, Perona JJ, Kohli RM, Mehl RA, Petersson EJ. Improving target amino acid selectivity in a permissive aminoacyl tRNA synthetase through counter-selection. Organic & Biomolecular Chemistry. PMID 28397914 DOI: 10.1039/C7Ob00582B |
0.373 |
|
| 2017 |
Rauch BJ, Klimek J, David LL, Perona JJ. Persulfide formation mediates cysteine and homocysteine biosynthesis in Methanosarcina acetivorans. Biochemistry. PMID 28165724 DOI: 10.1021/Acs.Biochem.6B00931 |
0.409 |
|
| 2016 |
Rauch BJ, Perona JJ. Efficient sulfide assimilation in Methanosarcina acetivorans is mediated by the MA1715 protein. Journal of Bacteriology. PMID 27137504 DOI: 10.1128/Jb.00141-16 |
0.332 |
|
| 2015 |
Rauch BJ, Porter JJ, Mehl RA, Perona JJ. Improved incorporation of noncanonical amino acids by an engineered tRNATyr suppressor. Biochemistry. PMID 26694948 DOI: 10.1021/Acs.Biochem.5B01185 |
0.496 |
|
| 2014 |
Rauch BJ, Gustafson A, Perona JJ. Novel proteins for homocysteine biosynthesis in anaerobic microorganisms Molecular Microbiology. 94: 1330-1342. PMID 25315403 DOI: 10.1111/Mmi.12832 |
0.352 |
|
| 2014 |
Hadd A, Perona JJ. Recoding aminoacyl-tRNA synthetases for synthetic biology by rational protein-RNA engineering. Acs Chemical Biology. 9: 2761-6. PMID 25310879 DOI: 10.1021/Cb5006596 |
0.495 |
|
| 2014 |
Dulic M, Perona JJ, Gruic-Sovulj I. Determinants for tRNA-dependent pretransfer editing in the synthetic site of isoleucyl-tRNA synthetase. Biochemistry. 53: 6189-98. PMID 25207837 DOI: 10.1021/Bi5007699 |
0.796 |
|
| 2014 |
Hadd A, Perona JJ. Coevolution of specificity determinants in eukaryotic glutamyl- and glutaminyl-tRNA synthetases. Journal of Molecular Biology. 426: 3619-33. PMID 25149203 DOI: 10.1016/J.Jmb.2014.08.006 |
0.516 |
|
| 2014 |
Bhaskaran H, Taniguchi T, Suzuki T, Suzuki T, Perona JJ. Structural dynamics of a mitochondrial tRNA possessing weak thermodynamic stability. Biochemistry. 53: 1456-65. PMID 24520994 DOI: 10.1021/Bi401449Z |
0.43 |
|
| 2014 |
Perona JJ, Gruic-Sovulj I. Synthetic and editing mechanisms of aminoacyl-tRNA synthetases. Topics in Current Chemistry. 344: 1-41. PMID 23852030 DOI: 10.1007/128_2013_456 |
0.789 |
|
| 2013 |
Rodriguez-Hernandez A, Spears JL, Gaston KW, Limbach PA, Gamper H, Hou YM, Kaiser R, Agris PF, Perona JJ. Structural and mechanistic basis for enhanced translational efficiency by 2-thiouridine at the tRNA anticodon wobble position. Journal of Molecular Biology. 425: 3888-906. PMID 23727144 DOI: 10.1016/J.Jmb.2013.05.018 |
0.718 |
|
| 2012 |
Perona JJ, Hadd A. Structural diversity and protein engineering of the aminoacyl-tRNA synthetases. Biochemistry. 51: 8705-29. PMID 23075299 DOI: 10.1021/Bi301180X |
0.506 |
|
| 2012 |
Cvetesic N, Perona JJ, Gruic-Sovulj I. Kinetic partitioning between synthetic and editing pathways in class I aminoacyl-tRNA synthetases occurs at both pre-transfer and post-transfer hydrolytic steps. The Journal of Biological Chemistry. 287: 25381-94. PMID 22648413 DOI: 10.1074/Jbc.M112.372151 |
0.832 |
|
| 2012 |
Oza JP, Sowers KR, Perona JJ. Linking energy production and protein synthesis in hydrogenotrophic methanogens. Biochemistry. 51: 2378-89. PMID 22401293 DOI: 10.1021/Bi300106P |
0.781 |
|
| 2012 |
Bhaskaran H, Rodriguez-Hernandez A, Perona JJ. Kinetics of tRNA folding monitored by aminoacylation. Rna (New York, N.Y.). 18: 569-80. PMID 22286971 DOI: 10.1261/Rna.030080.111 |
0.5 |
|
| 2012 |
Grant TD, Snell EH, Luft JR, Quartley E, Corretore S, Wolfley JR, Snell ME, Hadd A, Perona JJ, Phizicky EM, Grayhack EJ. Structural conservation of an ancient tRNA sensor in eukaryotic glutaminyl-tRNA synthetase. Nucleic Acids Research. 40: 3723-31. PMID 22180531 DOI: 10.1093/Nar/Gkr1223 |
0.548 |
|
| 2011 |
Bhaskaran H, Perona JJ. Two-step aminoacylation of tRNA without channeling in Archaea. Journal of Molecular Biology. 411: 854-69. PMID 21726564 DOI: 10.1016/J.Jmb.2011.06.039 |
0.466 |
|
| 2011 |
Menezes S, Gaston KW, Krivos KL, Apolinario EE, Reich NO, Sowers KR, Limbach PA, Perona JJ. Formation of m2G6 in Methanocaldococcus jannaschii tRNA catalyzed by the novel methyltransferase Trm14. Nucleic Acids Research. 39: 7641-55. PMID 21693558 DOI: 10.1093/Nar/Gkr475 |
0.816 |
|
| 2011 |
Rodríguez-Hernández A, Perona JJ. Heat maps for intramolecular communication in an RNP enzyme encoding glutamine. Structure (London, England : 1993). 19: 386-96. PMID 21397189 DOI: 10.1016/J.Str.2010.12.017 |
0.491 |
|
| 2011 |
Hancock SP, Hiller DA, Perona JJ, Jen-Jacobson L. The energetic contribution of induced electrostatic asymmetry to DNA bending by a site-specific protein. Journal of Molecular Biology. 406: 285-312. PMID 21167173 DOI: 10.1016/J.Jmb.2010.12.012 |
0.706 |
|
| 2010 |
Perona JJ, Oza JP. Crystal structure of a reverse polymerase. Proceedings of the National Academy of Sciences of the United States of America. 107: 20149-50. PMID 21078997 DOI: 10.1073/Pnas.1015283107 |
0.808 |
|
| 2010 |
Christian T, Lahoud G, Liu C, Hoffmann K, Perona JJ, Hou YM. Mechanism of N-methylation by the tRNA m1G37 methyltransferase Trm5. Rna (New York, N.Y.). 16: 2484-92. PMID 20980671 DOI: 10.1261/Rna.2376210 |
0.404 |
|
| 2010 |
Rodríguez-Hernández A, Bhaskaran H, Hadd A, Perona JJ. Synthesis of Glu-tRNA(Gln) by engineered and natural aminoacyl-tRNA synthetases. Biochemistry. 49: 6727-36. PMID 20617848 DOI: 10.1021/Bi100886Z |
0.525 |
|
| 2010 |
Dulic M, Cvetesic N, Perona JJ, Gruic-Sovulj I. Partitioning of tRNA-dependent editing between pre- and post-transfer pathways in class I aminoacyl-tRNA synthetases. The Journal of Biological Chemistry. 285: 23799-809. PMID 20498377 DOI: 10.1074/Jbc.M110.133553 |
0.829 |
|
| 2010 |
Hou YM, Perona JJ. Stereochemical mechanisms of tRNA methyltransferases. Febs Letters. 584: 278-86. PMID 19944101 DOI: 10.1016/J.Febslet.2009.11.075 |
0.494 |
|
| 2009 |
Corigliano EM, Perona JJ. Architectural underpinnings of the genetic code for glutamine. Biochemistry. 48: 676-87. PMID 19128026 DOI: 10.1021/Bi801552Y |
0.809 |
|
| 2008 |
Hauenstein SI, Hou YM, Perona JJ. The homotetrameric phosphoseryl-tRNA synthetase from Methanosarcina mazei exhibits half-of-the-sites activity. The Journal of Biological Chemistry. 283: 21997-2006. PMID 18559342 DOI: 10.1074/Jbc.M801838200 |
0.793 |
|
| 2008 |
Hauenstein SI, Perona JJ. Redundant synthesis of cysteinyl-tRNACys in Methanosarcina mazei. The Journal of Biological Chemistry. 283: 22007-17. PMID 18559341 DOI: 10.1074/Jbc.M801839200 |
0.761 |
|
| 2008 |
Bullock TL, RodrÃguez-Hernández A, Corigliano EM, Perona JJ. A rationally engineered misacylating aminoacyl-tRNA synthetase. Proceedings of the National Academy of Sciences of the United States of America. 105: 7428-33. PMID 18477696 DOI: 10.1073/Pnas.0711812105 |
0.835 |
|
| 2008 |
Francklyn CS, First EA, Perona JJ, Hou YM. Methods for kinetic and thermodynamic analysis of aminoacyl-tRNA synthetases. Methods (San Diego, Calif.). 44: 100-18. PMID 18241792 DOI: 10.1016/J.Ymeth.2007.09.007 |
0.442 |
|
| 2007 |
Perona JJ, Hou YM. Indirect readout of tRNA for aminoacylation. Biochemistry. 46: 10419-32. PMID 17718520 DOI: 10.1021/Bi7014647 |
0.523 |
|
| 2007 |
Liu C, Gamper H, Shtivelband S, Hauenstein S, Perona JJ, Hou YM. Kinetic quality control of anticodon recognition by a eukaryotic aminoacyl-tRNA synthetase. Journal of Molecular Biology. 367: 1063-78. PMID 17303165 DOI: 10.1016/J.Jmb.2007.01.050 |
0.755 |
|
| 2007 |
de los Rios S, Perona JJ. Structure of the Escherichia coli leucine-responsive regulatory protein Lrp reveals a novel octameric assembly. Journal of Molecular Biology. 366: 1589-602. PMID 17223133 DOI: 10.1016/J.Jmb.2006.12.032 |
0.778 |
|
| 2006 |
Fogg JM, Kolmakova N, Rees I, Magonov S, Hansma H, Perona JJ, Zechiedrich EL. Exploring writhe in supercoiled minicircle DNA. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 18: S145-S159. PMID 19337583 DOI: 10.1088/0953-8984/18/14/S01 |
0.334 |
|
| 2006 |
Hiller DA, Perona JJ. Positively charged C-terminal subdomains of EcoRV endonuclease: contributions to DNA binding, bending, and cleavage. Biochemistry. 45: 11453-63. PMID 16981705 DOI: 10.1021/Bi0606400 |
0.752 |
|
| 2006 |
Youngblood B, Shieh FK, De Los Rios S, Perona JJ, Reich NO. Engineered extrahelical base destabilization enhances sequence discrimination of DNA methyltransferase M.HhaI. Journal of Molecular Biology. 362: 334-46. PMID 16919299 DOI: 10.1016/J.Jmb.2006.07.031 |
0.806 |
|
| 2006 |
Zhang CM, Perona JJ, Ryu K, Francklyn C, Hou YM. Distinct kinetic mechanisms of the two classes of Aminoacyl-tRNA synthetases. Journal of Molecular Biology. 361: 300-11. PMID 16843487 DOI: 10.1016/J.Jmb.2006.06.015 |
0.434 |
|
| 2006 |
Uter NT, Perona JJ. Active-site assembly in glutaminyl-tRNA synthetase by tRNA-mediated induced fit. Biochemistry. 45: 6858-65. PMID 16734422 DOI: 10.1021/Bi052606B |
0.852 |
|
| 2005 |
Hiller DA, Rodriguez AM, Perona JJ. Non-cognate enzyme-DNA complex: structural and kinetic analysis of EcoRV endonuclease bound to the EcoRI recognition site GAATTC. Journal of Molecular Biology. 354: 121-36. PMID 16236314 DOI: 10.1016/J.Jmb.2005.09.046 |
0.776 |
|
| 2005 |
Perona JJ. Two-step pathway to aminoacylated tRNA. Structure (London, England : 1993). 13: 1397-8. PMID 16216568 DOI: 10.1016/J.Str.2005.09.003 |
0.459 |
|
| 2005 |
Uter NT, Gruic-Sovulj I, Perona JJ. Amino acid-dependent transfer RNA affinity in a class I aminoacyl-tRNA synthetase. The Journal of Biological Chemistry. 280: 23966-77. PMID 15845537 DOI: 10.1074/Jbc.M414259200 |
0.835 |
|
| 2005 |
Gruic-Sovulj I, Uter N, Bullock T, Perona JJ. tRNA-dependent aminoacyl-adenylate hydrolysis by a nonediting class I aminoacyl-tRNA synthetase. The Journal of Biological Chemistry. 280: 23978-86. PMID 15845536 DOI: 10.1074/Jbc.M414260200 |
0.828 |
|
| 2004 |
Hauenstein S, Zhang CM, Hou YM, Perona JJ. Shape-selective RNA recognition by cysteinyl-tRNA synthetase. Nature Structural & Molecular Biology. 11: 1134-41. PMID 15489861 DOI: 10.1038/Nsmb849 |
0.771 |
|
| 2004 |
Uter NT, Perona JJ. Long-range intramolecular signaling in a tRNA synthetase complex revealed by pre-steady-state kinetics. Proceedings of the National Academy of Sciences of the United States of America. 101: 14396-401. PMID 15452355 DOI: 10.1073/Pnas.0404017101 |
0.822 |
|
| 2004 |
Horton NC, Perona JJ. DNA cleavage by EcoRV endonuclease: two metal ions in three metal ion binding sites. Biochemistry. 43: 6841-57. PMID 15170321 DOI: 10.1021/Bi0499056 |
0.439 |
|
| 2003 |
Hiller DA, Fogg JM, Martin AM, Beechem JM, Reich NO, Perona JJ. Simultaneous DNA binding and bending by EcoRV endonuclease observed by real-time fluorescence. Biochemistry. 42: 14375-85. PMID 14661948 DOI: 10.1021/Bi035520W |
0.733 |
|
| 2003 |
Zhang CM, Perona JJ, Hou YM. Amino acid discrimination by a highly differentiated metal center of an aminoacyl-tRNA synthetase. Biochemistry. 42: 10931-7. PMID 12974627 DOI: 10.1021/Bi034812U |
0.553 |
|
| 2003 |
Sherlin LD, Perona JJ. tRNA-dependent active site assembly in a class I aminoacyl-tRNA synthetase. Structure (London, England : 1993). 11: 591-603. PMID 12737824 DOI: 10.1016/S0969-2126(03)00074-1 |
0.846 |
|
| 2003 |
Bullock TL, Uter N, Nissan TA, Perona JJ. Amino acid discrimination by a class I aminoacyl-tRNA synthetase specified by negative determinants. Journal of Molecular Biology. 328: 395-408. PMID 12691748 DOI: 10.1016/S0022-2836(03)00305-X |
0.823 |
|
| 2003 |
Zhang CM, Christian T, Newberry KJ, Perona JJ, Hou YM. Zinc-mediated amino acid discrimination in cysteinyl-tRNA synthetase. Journal of Molecular Biology. 327: 911-7. PMID 12662918 DOI: 10.1016/S0022-2836(03)00241-9 |
0.724 |
|
| 2002 |
Francklyn C, Perona JJ, Puetz J, Hou YM. Aminoacyl-tRNA synthetases: versatile players in the changing theater of translation. Rna (New York, N.Y.). 8: 1363-72. PMID 12458790 DOI: 10.1017/S1355838202021180 |
0.473 |
|
| 2002 |
Perona JJ. Type II restriction endonucleases. Methods (San Diego, Calif.). 28: 353-64. PMID 12431439 DOI: 10.1016/S1046-2023(02)00242-6 |
0.524 |
|
| 2002 |
Horton NC, Otey C, Lusetti S, Sam MD, Kohn J, Martin AM, Ananthnarayan V, Perona JJ. Electrostatic contributions to site specific DNA cleavage by EcoRV endonuclease. Biochemistry. 41: 10754-63. PMID 12196013 DOI: 10.1021/Bi020305L |
0.542 |
|
| 2002 |
Newberry KJ, Hou YM, Perona JJ. Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase. The Embo Journal. 21: 2778-87. PMID 12032090 DOI: 10.1093/Emboj/21.11.2778 |
0.763 |
|
| 2002 |
Horton NC, Dorner LF, Perona JJ. Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation. Nature Structural Biology. 9: 42-7. PMID 11742344 DOI: 10.1038/Nsb741 |
0.436 |
|
| 2001 |
Sherlin LD, Bullock TL, Nissan TA, Perona JJ, Lariviere FJ, Uhlenbeck OC, Scaringe SA. Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization. Rna (New York, N.Y.). 7: 1671-8. PMID 11720294 |
0.793 |
|
| 2001 |
Horton NC, Perona JJ. Making the most of metal ions Nature Structural Biology. 8: 290-293. PMID 11276242 DOI: 10.1038/86149 |
0.383 |
|
| 2001 |
Sam MD, Horton NC, Nissan TA, Perona JJ. Catalytic efficiency and sequence selectivity of a restriction endonuclease modulated by a distal manganese ion binding site. Journal of Molecular Biology. 306: 851-61. PMID 11243793 DOI: 10.1006/Jmbi.2000.4434 |
0.797 |
|
| 2000 |
Nissan TA, Perona JJ. Alternative designs for construction of the class II transfer RNA tertiary core. Rna (New York, N.Y.). 6: 1585-96. PMID 11105758 DOI: 10.1017/S1355838200001126 |
0.775 |
|
| 2000 |
Bullock TL, Sherlin LD, Perona JJ. Tertiary core rearrangements in a tight binding transfer RNA aptamer. Nature Structural Biology. 7: 497-504. PMID 10881199 DOI: 10.1038/75910 |
0.814 |
|
| 2000 |
Sherlin LD, Bullock TL, Newberry KJ, Lipman RS, Hou YM, Beijer B, Sproat BS, Perona JJ. Influence of transfer RNA tertiary structure on aminoacylation efficiency by glutaminyl and cysteinyl-tRNA synthetases. Journal of Molecular Biology. 299: 431-46. PMID 10860750 DOI: 10.1006/Jmbi.2000.3749 |
0.793 |
|
| 2000 |
Horton NC, Perona JJ. Crystallographic snapshots along a protein-induced DNA-bending pathway Proceedings of the National Academy of Sciences of the United States of America. 97: 5729-5734. PMID 10801972 DOI: 10.1073/Pnas.090370797 |
0.421 |
|
| 1999 |
Horton NC, Dorner LF, Schildkraut I, Perona JJ. Crystallization and preliminary diffraction analysis of the HincII restriction endonuclease-DNA complex Acta Crystallographica Section D: Biological Crystallography. 55: 1943-1945. PMID 10531503 DOI: 10.1107/S0907444999010574 |
0.37 |
|
| 1999 |
Martin AM, Horton NC, Lusetti S, Reich NO, Perona JJ. Divalent metal dependence of site-specific DNA binding by EcoRV endonuclease. Biochemistry. 38: 8430-9. PMID 10387089 DOI: 10.1021/Bi9905359 |
0.443 |
|
| 1999 |
Sam MD, Perona JJ. Catalytic roles of divalent metal ions in phosphoryl transfer by EcoRV endonuclease. Biochemistry. 38: 6576-86. PMID 10350476 DOI: 10.1021/Bi9901580 |
0.413 |
|
| 1999 |
Newberry KJ, Kohn J, Hou YM, Perona JJ. Crystallization and preliminary diffraction analysis of Escherichia coli cysteinyl-tRNA synthetase Acta Crystallographica Section D: Biological Crystallography. 55: 1046-1047. PMID 10216301 DOI: 10.1107/S0907444999001468 |
0.676 |
|
| 1999 |
Nissan TA, Oliphant B, Perona JJ. An engineered class I transfer RNA with a class II tertiary fold. Rna (New York, N.Y.). 5: 434-45. PMID 10094311 DOI: 10.1017/S1355838299981827 |
0.762 |
|
| 1999 |
Martin AM, Sam MD, Reich NO, Perona JJ. Structural and energetic origins of indirect readout in site-specific DNA cleavage by a restriction endonuclease. Nature Structural Biology. 6: 269-77. PMID 10074946 DOI: 10.1038/6707 |
0.471 |
|
| 1999 |
Sam MD, Perona JJ. Mn2+-dependent catalysis by restriction enzymes: Pre-steady-state analysis of EcoRV endonuclease reveals burst kinetics and the origins of reduced activity Journal of the American Chemical Society. 121: 1444-1447. DOI: 10.1021/Ja983787Q |
0.368 |
|
| 1998 |
Horton NC, Newberry KJ, Perona JJ. Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleases. Proceedings of the National Academy of Sciences of the United States of America. 95: 13489-94. PMID 9811827 DOI: 10.1073/Pnas.95.23.13489 |
0.688 |
|
| 1998 |
Horton NC, Perona JJ. Recognition of flanking DNA sequences by EcoRV endonuclease involves alternative patterns of water-mediated contacts Journal of Biological Chemistry. 273: 21721-21729. PMID 9705308 DOI: 10.1074/Jbc.273.34.21721 |
0.433 |
|
| 1998 |
Horton NC, Perona JJ. Role of protein-induced bending in the specificity of DNA recognition: Crystal structure of EcoRV endonuclease complexed with d(AAAGAT) + d(ATCTT) Journal of Molecular Biology. 277: 779-787. PMID 9545372 DOI: 10.1006/Jmbi.1998.1655 |
0.462 |
|
| 1997 |
Perona JJ, Craik CS. Evolutionary divergence of substrate specificity within the chymotrypsin-like serine protease fold Journal of Biological Chemistry. 272: 29987-29990. PMID 9374470 DOI: 10.1074/Jbc.272.48.29987 |
0.644 |
|
| 1997 |
Perona JJ, Martin AM. Conformational transitions and structural deformability of EcoRV endonuclease revealed by crystallographic analysis Journal of Molecular Biology. 273: 207-225. PMID 9367757 DOI: 10.1006/Jmbi.1997.1315 |
0.553 |
|
| 1997 |
Tsu CA, Perona JJ, Fletterick RJ, Craik CS. Structural basis for the broad substrate specificity of fiddler crab collagenolytic serine protease 1. Biochemistry. 36: 5393-401. PMID 9154921 DOI: 10.1021/Bi961753U |
0.769 |
|
| 1997 |
Perona JJ, Tsu CA, Craik CS, Fletterick RJ. Crystal structure of an ecotin-collagenase complex suggests a model for recognition and cleavage of the collagen triple helix. Biochemistry. 36: 5381-92. PMID 9154920 DOI: 10.1021/Bi9617522 |
0.738 |
|
| 1995 |
Willett WS, Gillmor SA, Perona JJ, Fletterick RJ, Craik CS. Engineered metal regulation of trypsin specificity Biochemistry. 34: 2172-2180. PMID 7857928 |
0.695 |
|
| 1995 |
Perona JJ, Hedstrom L, Rutter WJ, Fletterick RJ. Structural origins of substrate discrimination in trypsin and chymotrypsin. Biochemistry. 34: 1489-99. PMID 7849008 DOI: 10.1021/Bi00005A004 |
0.755 |
|
| 1995 |
Perona JJ, Craik CS. Structural basis of substrate specificity in the serine proteases Protein Science. 4: 337-360. PMID 7795518 DOI: 10.1002/Pro.5560040301 |
0.58 |
|
| 1995 |
Landès C, Perona JJ, Brunie S, Rould MA, Zelwer C, Steitz TA, Risler JL. A structure-based multiple sequence alignment of all class I aminoacyl-tRNA synthetases Biochimie. 77: 194-203. PMID 7647112 DOI: 10.1016/0300-9084(96)88125-9 |
0.664 |
|
| 1994 |
Perona JJ, Hedstrom L, Wagner RL, Rutter WJ, Craik CS, Fletterick RJ. Exogenous acetate reconstitutes the enzymatic activity of trypsin Asp189Ser. Biochemistry. 33: 3252-9. PMID 8136360 DOI: 10.1021/Bi00177A016 |
0.787 |
|
| 1994 |
Hedstrom L, Perona JJ, Rutter WJ. Converting trypsin to chymotrypsin: residue 172 is a substrate specificity determinant. Biochemistry. 33: 8757-63. PMID 8038165 DOI: 10.1021/Bi00195A017 |
0.648 |
|
| 1994 |
Tsu CA, Perona JJ, Schellenberger V, Turck CW, Craik CS. The substrate specificity of Uca pugilator collagenolytic serine protease 1 correlates with the bovine type I collagen cleavage sites. The Journal of Biological Chemistry. 269: 19565-72. PMID 8034725 |
0.311 |
|
| 1993 |
Perona JJ, Tsu CA, McGrath ME, Craik CS, Fletterick RJ. Relocating a negative charge in the binding pocket of trypsin. Journal of Molecular Biology. 230: 934-49. PMID 8478942 DOI: 10.1006/Jmbi.1993.1211 |
0.743 |
|
| 1993 |
Perona JJ, Rould MA, Steitz TA. Structural basis for transfer RNA aminoacylation by escherichia coli glutaminyl-tRNA synthetase Biochemistry. 32: 8758-8771. PMID 8364025 DOI: 10.1021/Bi00085A006 |
0.706 |
|
| 1993 |
Perona JJ, Craik CS, Fletterick RJ. Locating the catalytic water molecule in serine proteases Science. 261: 620-622. PMID 8342029 DOI: 10.1126/Science.8342029 |
0.613 |
|
| 1993 |
Perona JJ, Evnin LB, Craik CS. A genetic selection elucidates structural determinants of arginine versus lysine specificity in trypsin Gene. 137: 121-126. PMID 8282194 DOI: 10.1016/0378-1119(93)90259-6 |
0.609 |
|
| 1993 |
Perona JJ, Tsu CA, Craik CS, Fletterick RJ. Crystal structures of rat anionic trypsin complexed with the protein inhibitors APPI and BPTI. Journal of Molecular Biology. 230: 919-33. PMID 7683059 DOI: 10.1006/Jmbi.1993.1210 |
0.699 |
|
| 1992 |
Rould MA, Perona JJ, Steitz TA. Improving multiple isomorphous replacement phasing by heavy-atom refinement using solvent-flattened phases Acta Crystallographica Section a: Foundations of Crystallography. 48: Pt 5/-. PMID 1445683 DOI: 10.1107/S0108767392003404 |
0.412 |
|
| 1991 |
Perona JJ, Rould MA, Steitz TA, Risler JL, Zelwer C, Brunie S. Structural similarities in glutaminyl- and methionyl-tRNA synthetases suggest a common overall orientation of tRNA binding. Proceedings of the National Academy of Sciences of the United States of America. 88: 2903-7. PMID 2011598 DOI: 10.1073/Pnas.88.7.2903 |
0.679 |
|
| 1991 |
Rould MA, Perona JJ, Steitz TA. Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase Nature. 352: 213-218. PMID 1857417 DOI: 10.1038/352213A0 |
0.697 |
|
| 1990 |
Perona JJ, Swanson RN, Rould MA, Steitz TA, Söll D. Structural basis for misaminoacylation by mutant E. coli glutaminyl-tRNA synthetase enzymes. Science (New York, N.Y.). 246: 1152-4. PMID 2686030 DOI: 10.1126/Science.2686030 |
0.764 |
|
| 1990 |
Rould MA, Perona JJ, Söll D, Steitz TA. Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 A resolution. Science (New York, N.Y.). 246: 1135-42. PMID 2479982 DOI: 10.1126/Science.2479982 |
0.748 |
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| 1990 |
Steitz TA, Rould MA, Perona JJ. Structural basis of tRNA discrimination as derived from the high resolution crystal structure of glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP. Molecular Biology Reports. 14: 213-4. PMID 2194108 DOI: 10.1007/Bf00360479 |
0.619 |
|
| 1990 |
Perona JJ. Crystallization of RNA-protein complexes Methods. 1: 75-82. DOI: 10.1016/S1046-2023(05)80149-5 |
0.396 |
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| 1988 |
Perona JJ, Swanson R, Steitz TA, Söll D. Overproduction and purification of Escherichia coli tRNA(2Gln) and its use in crystallization of the glutaminyl-tRNA synthetase-tRNA(Gln) complex. Journal of Molecular Biology. 202: 121-6. PMID 2459391 DOI: 10.1016/0022-2836(88)90524-4 |
0.664 |
|
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