| Year |
Citation |
Score |
| 2019 |
Liu Z, Zhou Y, Liu J, Chen J, Heck AJ, Wang F. Reductive methylation labeling, from quantitative to structural proteomics Trac Trends in Analytical Chemistry. 118: 771-778. DOI: 10.1016/J.Trac.2019.07.009 |
0.337 |
|
| 2018 |
Lizatović R, Assent M, Barendregt A, Dahlin J, Bille A, Satzinger K, Tupina D, Heck AJ, Wennmalm S, André I. A protein encapsulation system with Ca2+-controlled cargo loading and detachment. Angewandte Chemie (International Ed. in English). PMID 29975817 DOI: 10.1002/Anie.201806466 |
0.322 |
|
| 2018 |
Alsina K, Hulsurkar M, Yao C, Langer B, Chiang D, Buxton S, Sangen Nvd, Heck A, Dobrev D, Wehrens X. Novel role of the protein phosphatase 1 regulatory subunit PPP1R3A in atrial fibrillation Journal of Molecular and Cellular Cardiology. 124: 108. DOI: 10.1016/J.Yjmcc.2018.07.077 |
0.31 |
|
| 2018 |
Reiding KR, Bondt A, Franc V, Heck AJ. The benefits of hybrid fragmentation methods for glycoproteomics Trac Trends in Analytical Chemistry. 108: 260-268. DOI: 10.1016/J.Trac.2018.09.007 |
0.375 |
|
| 2017 |
Wang G, de Jong RN, van den Bremer ET, Parren PW, Heck AJ. Enhancing accuracy in molecular weight determination of highly heterogeneously glycosylated proteins by native tandem mass spectrometry. Analytical Chemistry. PMID 28383250 DOI: 10.1021/Acs.Analchem.6B05129 |
0.418 |
|
| 2017 |
Snijder J, Radtke K, Anderson F, Scholtes L, Corradini E, Baines J, Heck AJ, Wuite GJ, Sodeik B, Roos WH. The vertex specific proteins pUL17 and pUL25 mechanically reinforce Herpes Simplex Virus capsids. Journal of Virology. PMID 28381566 DOI: 10.1128/Jvi.00123-17 |
0.329 |
|
| 2017 |
van Ooijen MP, Jong VL, Eijkemans MJ, Heck AJ, Andeweg AC, Binai NA, van den Ham HJ. Identification of differentially expressed peptides in high-throughput proteomics data. Briefings in Bioinformatics. PMID 28369175 DOI: 10.1093/Bib/Bbx031 |
0.366 |
|
| 2017 |
van de Waterbeemd M, Llauró A, Snijder J, Valbuena A, Rodríguez-Huete A, Fuertes MA, de Pablo PJ, Mateu MG, Heck AJ. Structural Analysis of a Temperature-Induced Transition in a Viral Capsid Probed by HDX-MS. Biophysical Journal. 112: 1157-1165. PMID 28355543 DOI: 10.1016/J.Bpj.2017.02.003 |
0.342 |
|
| 2017 |
Snijder J, Schuller JM, Wiegard A, Lössl P, Schmelling N, Axmann IM, Plitzko JM, Förster F, Heck AJ. Structures of the cyanobacterial circadian oscillator frozen in a fully assembled state. Science (New York, N.Y.). 355: 1181-1184. PMID 28302852 DOI: 10.1126/Science.Aag3218 |
0.359 |
|
| 2017 |
Yang Y, Wang G, Song T, Lebrilla CB, Heck AJ. Resolving the micro-heterogeneity and structural integrity of monoclonal antibodies by hybrid mass spectrometric approaches. Mabs. 1-8. PMID 28281873 DOI: 10.1080/19420862.2017.1290033 |
0.361 |
|
| 2017 |
Sasaki E, Böhringer D, van de Waterbeemd M, Leibundgut M, Zschoche R, Heck AJ, Ban N, Hilvert D. Structure and assembly of scalable porous protein cages. Nature Communications. 8: 14663. PMID 28281548 DOI: 10.1038/Ncomms14663 |
0.329 |
|
| 2017 |
Cristobal A, Marino F, Post H, van den Toorn HW, Mohammed S, Heck AJ. Towards an optimized workflow for middle-down proteomics. Analytical Chemistry. PMID 28233997 DOI: 10.1021/Acs.Analchem.6B03756 |
0.365 |
|
| 2017 |
Franc V, Yang Y, Heck AJ. Proteoform profile mapping of the human serum Complement component C9 reveals unexpected new features of N-, O- and C-glycosylation. Analytical Chemistry. PMID 28221766 DOI: 10.1021/Acs.Analchem.6B04527 |
0.375 |
|
| 2017 |
Frese CK, Mikhaylova M, Stucchi R, Gautier V, Liu Q, Mohammed S, Heck AJ, Altelaar AF, Hoogenraad CC. Quantitative Map of Proteome Dynamics during Neuronal Differentiation. Cell Reports. 18: 1527-1542. PMID 28178528 DOI: 10.1016/J.Celrep.2017.01.025 |
0.303 |
|
| 2017 |
Lebesgue N, Megyeri M, Cristobal A, Scholten A, Chuartzman SG, Voichek Y, Scheltema RA, Mohammed S, Futerman AH, Schuldiner M, Heck AJ, Lemeer S. Combining Deep Sequencing, Proteomics, Phosphoproteomics, and Functional Screens To Discover Novel Regulators of Sphingolipid Homeostasis. Journal of Proteome Research. 16: 571-582. PMID 28152593 DOI: 10.1021/Acs.Jproteome.6B00691 |
0.323 |
|
| 2017 |
van de Waterbeemd M, Fort KL, Boll D, Reinhardt-Szyba M, Routh A, Makarov A, Heck AJ. High-fidelity mass analysis unveils heterogeneity in intact ribosomal particles. Nature Methods. PMID 28114288 DOI: 10.1038/Nmeth.4147 |
0.374 |
|
| 2017 |
Cristobal A, van den Toorn HW, van de Wetering M, Clevers H, Heck AJ, Mohammed S. Personalized Proteome Profiles of Healthy and Tumor Human Colon Organoids Reveal Both Individual Diversity and Basic Features of Colorectal Cancer. Cell Reports. 18: 263-274. PMID 28052255 DOI: 10.1016/J.Celrep.2016.12.016 |
0.31 |
|
| 2016 |
Tsiatsiani L, Giansanti P, Scheltema RA, van den Toorn H, Overall CM, Altelaar AF, Heck AJ. Opposite Electron-Transfer Dissociation and Higher-Energy Collisional Dissociation Fragmentation Characteristics of Proteolytic K/R(X)n and (X)nK/R Peptides Provide Benefits for Peptide Sequencing in Proteomics and Phosphoproteomics. Journal of Proteome Research. PMID 28111955 DOI: 10.1021/Acs.Jproteome.6B00825 |
0.337 |
|
| 2016 |
Post H, Penning R, Fitzpatrick MA, Garrigues LB, Wu W, MacGillavry HD, Hoogenraad CC, Heck AJ, Altelaar AF. Robust, Sensitive, and Automated Phosphopeptide Enrichment Optimized for Low Sample Amounts Applied to Primary Hippocampal Neurons. Journal of Proteome Research. PMID 28107008 DOI: 10.1021/Acs.Jproteome.6B00753 |
0.345 |
|
| 2016 |
De Nardis C, Lössl P, van den Biggelaar M, Madoori PK, Leloup N, Mertens K, Heck AJ, Gros P. Recombinant Expression of the Full-length Ectodomain of LDL Receptor-related Protein 1 (LRP1) Unravels pH-dependent Conformational Changes and the Stoichiometry of Binding with Receptor-associated Protein (RAP). The Journal of Biological Chemistry. PMID 27956551 DOI: 10.1074/Jbc.M116.758862 |
0.344 |
|
| 2016 |
Alpízar A, Marino F, Ramos-Fernández A, Lombardía M, Jeko A, Pazos F, Paradela A, Santiago C, Heck AJ, Marcilla M. A molecular basis for the presentation of phosphorylated peptides by HLA-B antigens. Molecular & Cellular Proteomics : McP. PMID 27920218 DOI: 10.1074/Mcp.M116.063800 |
0.308 |
|
| 2016 |
Leney AC, Heck AJ. Native Mass Spectrometry: What is in the Name? Journal of the American Society For Mass Spectrometry. PMID 27909974 DOI: 10.1007/S13361-016-1545-3 |
0.368 |
|
| 2016 |
Loo JA, Heck AJ. Editorial and Review: 31(st) ASMS Asilomar Conference on Native Mass Spectrometry-Based Structural Biology. Journal of the American Society For Mass Spectrometry. PMID 27896696 DOI: 10.1007/S13361-016-1540-8 |
0.309 |
|
| 2016 |
Yang Y, Liu F, Franc V, Halim LA, Schellekens H, Heck AJ. Hybrid mass spectrometry approaches in glycoprotein analysis and their usage in scoring biosimilarity. Nature Communications. 7: 13397. PMID 27824045 DOI: 10.1038/Ncomms13397 |
0.416 |
|
| 2016 |
Lössl P, van de Waterbeemd M, Heck AJ. The diverse and expanding role of mass spectrometry in structural and molecular biology. The Embo Journal. 35: 2634-2657. PMID 27797822 DOI: 10.15252/Embj.201694818 |
0.361 |
|
| 2016 |
Chiang DY, Heck AJ, Dobrev D, Wehrens XH. Regulating the regulator: Insights into the cardiac protein phosphatase 1 interactome. Journal of Molecular and Cellular Cardiology. PMID 27663175 DOI: 10.1016/J.Yjmcc.2016.09.009 |
0.377 |
|
| 2016 |
Liu Q, Liu F, Yu KL, Tas R, Grigoriev I, Remmelzwaal S, Serra-Marques A, Kapitein LC, Heck AJ, Akhmanova A. MICAL3 flavoprotein monooxygenase forms a complex with centralspindlin and regulates cytokinesis. The Journal of Biological Chemistry. PMID 27528609 DOI: 10.1074/Jbc.M116.748186 |
0.356 |
|
| 2016 |
Waaijers S, Muñoz J, Berends C, Ramalho JJ, Goerdayal SS, Low TY, Zoumaro-Djayoon AD, Hoffmann M, Koorman T, Tas RP, Harterink M, Seelk S, Kerver J, Hoogenraad CC, Bossinger O, ... ... Heck AJ, et al. A tissue-specific protein purification approach in Caenorhabditis elegans identifies novel interaction partners of DLG-1/Discs large. Bmc Biology. 14: 66. PMID 27506200 DOI: 10.1186/S12915-016-0286-X |
0.394 |
|
| 2016 |
Lössl P, Brunner AM, Liu F, Leney AC, Yamashita M, Scheltema RA, Heck AJ. Deciphering the Interplay among Multisite Phosphorylation, Interaction Dynamics, and Conformational Transitions in a Tripartite Protein System. Acs Central Science. 2: 445-55. PMID 27504491 DOI: 10.1021/Acscentsci.6B00053 |
0.38 |
|
| 2016 |
Tamara S, Dyachenko A, Fort KL, Makarov AA, Scheltema RA, Heck AJ. Symmetry of Charge Partitioning in Collisional and UV Photon-induced Dissociation of Protein Assemblies. Journal of the American Chemical Society. PMID 27480281 DOI: 10.1021/Jacs.6B05147 |
0.394 |
|
| 2016 |
Snijder J, Kononova O, Barbu IM, Uetrecht C, Rurup WF, Burnley RJ, Koay MS, Cornelissen JJ, Roos WH, Barsegov V, Wuite GJ, Heck AJ. Assembly and mechanical properties of the cargo-free and cargo-loaded bacterial nanocompartment encapsulin. Biomacromolecules. PMID 27355101 DOI: 10.1021/Acs.Biomac.6B00469 |
0.324 |
|
| 2016 |
Wang G, de Jong RN, van den Bremer ET, Beurskens FJ, Labrijn AF, Ugurlar D, Gros P, Schuurman J, Parren PW, Heck AJ. Molecular Basis of Assembly and Activation of Complement Component C1 in Complex with Immunoglobulin G1 and Antigen. Molecular Cell. PMID 27320199 DOI: 10.1016/J.Molcel.2016.05.016 |
0.312 |
|
| 2016 |
Schmidlin T, Garrigues L, Lane CS, Mulder TC, van Doorn S, Post H, de Graaf EL, Lemeer S, Heck AJ, Altelaar AF. Assessment of SRM, MRM(3) and DIA for the targeted analysis of phosphorylation dynamics in non-small cell lung cancer. Proteomics. PMID 27219855 DOI: 10.1002/Pmic.201500453 |
0.345 |
|
| 2016 |
Lebesgue N, da Costa G, Ribeiro RM, Ribeiro-Silva C, Martins GG, Matranga V, Scholten A, Cordeiro C, Heck AJ, Santos R. Proteomic dataset of the sea urchin Paracentrotus lividus adhesive organs and secreted adhesive. Data in Brief. 7: 1497-505. PMID 27182547 DOI: 10.1016/J.Dib.2016.04.002 |
0.379 |
|
| 2016 |
Soni S, Raaijmakers AJ, Raaijmakers LM, Damen JM, van Stuijvenberg L, Vos MA, Heck AJ, van Veen TA, Scholten A. A Proteomics Approach to Identify New Putative Cardiac Intercalated Disk Proteins. Plos One. 11: e0152231. PMID 27148881 DOI: 10.1371/Journal.Pone.0152231 |
0.321 |
|
| 2016 |
Guerreiro AC, Penning R, Raaijmakers LM, Axman IM, Heck AJ, Altelaar AF. Monitoring light/dark association dynamics of multi-protein complexes in cyanobacteria using size exclusion chromatography-based proteomics. Journal of Proteomics. PMID 27142972 DOI: 10.1016/J.Jprot.2016.04.030 |
0.343 |
|
| 2016 |
Giansanti P, Tsiatsiani L, Low TY, Heck AJ. Six alternative proteases for mass spectrometry-based proteomics beyond trypsin. Nature Protocols. 11: 993-1006. PMID 27123950 DOI: 10.1038/Nprot.2016.057 |
0.423 |
|
| 2016 |
Burgers PP, Bruystens J, Burnley RJ, Nikolaev VO, Keshwani M, Wu J, Janssen BJ, Taylor SS, Heck AJ, Scholten A. Structure of smAKAP and its regulation by PKA-mediated phosphorylation. The Febs Journal. PMID 27028580 DOI: 10.1111/Febs.13726 |
0.302 |
|
| 2016 |
van de Waterbeemd M, Snijder J, Tsvetkova IB, Dragnea BG, Cornelissen JJ, Heck AJ. Examining the Heterogeneous Genome Content of Multipartite Viruses BMV and CCMV by Native Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 26926442 DOI: 10.1007/S13361-016-1348-6 |
0.376 |
|
| 2016 |
Lebesgue N, da Costa G, Ribeiro RM, Ribeiro-Silva C, Martins GG, Matranga V, Scholten A, Cordeiro C, Heck AJ, Santos R. Deciphering the molecular mechanisms underlying sea urchin reversible adhesion: A quantitative proteomics approach. Journal of Proteomics. PMID 26926440 DOI: 10.1016/J.Jprot.2016.02.026 |
0.337 |
|
| 2016 |
Mommen GP, Marino F, Meiring HD, Poelen MC, van Gaans-van den Brink JA, Mohammed S, Heck AJ, van Els CA. Sampling from the proteome to the HLA-DR ligandome proceeds via high specificity. Molecular & Cellular Proteomics : McP. PMID 26764012 DOI: 10.1074/Mcp.M115.055780 |
0.321 |
|
| 2016 |
Fort KL, Dyachenko A, Potel CM, Corradini E, Marino F, Barendregt A, Makarov AA, Scheltema RA, Heck AJ. Implementation of UV-photodissociation on a benchtop Q Exactive mass spectrometer and its application to phospho-proteomics. Analytical Chemistry. PMID 26760441 DOI: 10.1021/Acs.Analchem.5B04162 |
0.354 |
|
| 2015 |
Liu F, Heck AJ. Interrogating the architecture of protein assemblies and protein interaction networks by cross-linking mass spectrometry. Current Opinion in Structural Biology. 35: 100-108. PMID 26615471 DOI: 10.1016/J.Sbi.2015.10.006 |
0.401 |
|
| 2015 |
Low TY, Heck AJ. Reconciling proteomics with next generation sequencing. Current Opinion in Chemical Biology. 30: 14-20. PMID 26590485 DOI: 10.1016/J.Cbpa.2015.10.023 |
0.312 |
|
| 2015 |
Liu F, Rijkers DT, Post H, Heck AJ. Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry. Nature Methods. PMID 26414014 DOI: 10.1038/Nmeth.3603 |
0.379 |
|
| 2015 |
Schmidlin T, Boender AJ, Frese CK, Heck AJ, Adan RA, Altelaar AF. Diet-Induced Neuropeptide Expression: Feasibility of Quantifying Extended and Highly Charged Endogenous Peptide Sequences by Selected Reaction Monitoring. Analytical Chemistry. PMID 26376940 DOI: 10.1021/Acs.Analchem.5B03334 |
0.32 |
|
| 2015 |
Zeqiraj E, Tian L, Piggott CA, Pillon MC, Duffy NM, Ceccarelli DF, Keszei AF, Lorenzen K, Kurinov I, Orlicky S, Gish GD, Heck AJ, Guarné A, Greenberg RA, Sicheri F. Higher-Order Assembly of BRCC36-KIAA0157 Is Required for DUB Activity and Biological Function. Molecular Cell. 59: 970-83. PMID 26344097 DOI: 10.1016/J.Molcel.2015.07.028 |
0.331 |
|
| 2015 |
Raaijmakers LM, Giansanti P, Possik PA, Mueller J, Peeper DS, Heck AJ, Altelaar AF. PhosphoPath: Visualization of Phosphosite-centric Dynamics in Temporal Molecular Networks. Journal of Proteome Research. PMID 26317507 DOI: 10.1021/Acs.Jproteome.5B00529 |
0.317 |
|
| 2015 |
Magliozzi R, Peng M, Mohammed S, Guardavaccaro D, Heck AJ, Low TY. Datasets from an interaction proteomics screen for substrates of the SCF(βTrCP) ubiquitin ligase. Data in Brief. 4: 229-34. PMID 26217795 DOI: 10.1016/J.Dib.2015.05.003 |
0.369 |
|
| 2015 |
Corradini E, Klaasse G, Leurs U, Heck AJ, Martin NI, Scholten A. Charting the interactome of PDE3A in human cells using an IBMX based chemical proteomics approach. Molecular Biosystems. PMID 26205238 DOI: 10.1039/C5Mb00142K |
0.4 |
|
| 2015 |
Heck AJ. Gaining weight in structural biology: Applications of mass spectrometry in protein science. Protein Science : a Publication of the Protein Society. 24: 1173-5. PMID 26183567 DOI: 10.1002/Pro.2725 |
0.415 |
|
| 2015 |
Glas M, van den Berg van Saparoea HB, McLaughlin SH, Roseboom W, Liu F, Koningstein GM, Fish A, den Blaauwen T, Heck AJ, de Jong L, Bitter W, de Esch IJ, Luirink J. The Soluble Periplasmic Domains of Escherichia coli Cell Division Proteins FtsQ/FtsB/FtsL Form a Trimeric Complex with Submicromolar Affinity. The Journal of Biological Chemistry. 290: 21498-509. PMID 26160297 DOI: 10.1074/Jbc.M115.654756 |
0.401 |
|
| 2015 |
Welling M, Chen HH, Muñoz J, Musheev MU, Kester L, Junker JP, Mischerikow N, Arbab M, Kuijk E, Silberstein L, Kharchenko PV, Geens M, Niehrs C, van de Velde H, van Oudenaarden A, ... Heck AJ, et al. DAZL regulates Tet1 translation in murine embryonic stem cells. Embo Reports. PMID 26077710 DOI: 10.15252/Embr.201540538 |
0.31 |
|
| 2015 |
Giansanti P, Aye TT, van den Toorn H, Peng M, van Breukelen B, Heck AJ. An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas. Cell Reports. 11: 1834-43. PMID 26074081 DOI: 10.1016/J.Celrep.2015.05.029 |
0.391 |
|
| 2015 |
Peng M, Aye TT, Snel B, van Breukelen B, Scholten A, Heck AJ. Spatial Organization in Protein Kinase A Signaling Emerged at the Base of Animal Evolution. Journal of Proteome Research. PMID 26066639 DOI: 10.1021/Acs.Jproteome.5B00370 |
0.316 |
|
| 2015 |
Dyachenko A, Wang G, Belov M, Makarov A, de Jong RN, van den Bremer ET, Parren PW, Heck AJ. Tandem Native Mass-Spectrometry on Antibody-Drug Conjugates and Submillion Da Antibody-Antigen Protein Assemblies on an Orbitrap EMR Equipped with a High-Mass Quadrupole Mass Selector. Analytical Chemistry. 87: 6095-102. PMID 25978613 DOI: 10.1021/Acs.Analchem.5B00788 |
0.347 |
|
| 2015 |
Tsiatsiani L, Heck AJ. Proteomics beyond trypsin. The Febs Journal. PMID 25823410 DOI: 10.1111/Febs.13287 |
0.427 |
|
| 2015 |
Brunner AM, Lössl P, Liu F, Huguet R, Mullen C, Yamashita M, Zabrouskov V, Makarov A, Altelaar AF, Heck AJ. Benchmarking multiple fragmentation methods on an orbitrap fusion for top-down phospho-proteoform characterization. Analytical Chemistry. 87: 4152-8. PMID 25803405 DOI: 10.1021/Acs.Analchem.5B00162 |
0.421 |
|
| 2015 |
Corradini E, Heck AJ, Scholten A. Separation of PKA and PKG signaling nodes by chemical proteomics. Methods in Molecular Biology (Clifton, N.J.). 1294: 191-201. PMID 25783887 DOI: 10.1007/978-1-4939-2537-7_15 |
0.386 |
|
| 2015 |
Vogel CJ, Smit MA, Maddalo G, Possik PA, Sparidans RW, van der Burg SH, Verdegaal EM, Heck AJ, Samatar AA, Beijnen JH, Altelaar AF, Peeper DS. Cooperative induction of apoptosis in NRAS mutant melanoma by inhibition of MEK and ROCK. Pigment Cell & Melanoma Research. 28: 307-17. PMID 25728708 DOI: 10.1111/Pcmr.12364 |
0.681 |
|
| 2015 |
Isogai T, van der Kammen R, Goerdayal SS, Heck AJ, Altelaar AF, Innocenti M. Proteomic analyses uncover a new function and mode of action for mouse homolog of Diaphanous 2 (mDia2). Molecular & Cellular Proteomics : McP. 14: 1064-78. PMID 25682332 DOI: 10.1074/Mcp.M114.043885 |
0.303 |
|
| 2015 |
Corradini E, Burgers PP, Plank M, Heck AJ, Scholten A. Huntingtin-associated protein 1 (HAP1) is a cGMP-dependent kinase anchoring protein (GKAP) specific for the cGMP-dependent protein kinase Iβ isoform. The Journal of Biological Chemistry. 290: 7887-96. PMID 25653285 DOI: 10.1074/Jbc.M114.622613 |
0.398 |
|
| 2015 |
Gautier V, Boumeester AJ, Lössl P, Heck AJ. Lysine conjugation properties in human IgGs studied by integrating high-resolution native mass spectrometry and bottom-up proteomics. Proteomics. PMID 25641908 DOI: 10.1002/Pmic.201400462 |
0.352 |
|
| 2015 |
Binai NA, Marino F, Soendergaard P, Bache N, Mohammed S, Heck AJ. Rapid analyses of proteomes and interactomes using an integrated solid-phase extraction-liquid chromatography-MS/MS system. Journal of Proteome Research. 14: 977-85. PMID 25485597 DOI: 10.1021/Pr501011Z |
0.353 |
|
| 2015 |
Götzke H, Muheim C, Altelaar AF, Heck AJ, Maddalo G, Daley DO. Identification of putative substrates for the periplasmic chaperone YfgM in Escherichia coli using quantitative proteomics. Molecular & Cellular Proteomics : McP. 14: 216-26. PMID 25403562 DOI: 10.1074/Mcp.M114.043216 |
0.742 |
|
| 2015 |
Burgers PP, van der Heyden MA, Kok B, Heck AJ, Scholten A. A systematic evaluation of protein kinase A-A-kinase anchoring protein interaction motifs. Biochemistry. 54: 11-21. PMID 25097019 DOI: 10.1021/Bi500721A |
0.367 |
|
| 2014 |
Smit MA, Maddalo G, Greig K, Raaijmakers LM, Possik PA, van Breukelen B, Cappadona S, Heck AJ, Altelaar AF, Peeper DS. ROCK1 is a potential combinatorial drug target for BRAF mutant melanoma. Molecular Systems Biology. 10: 772. PMID 25538140 DOI: 10.15252/Msb.20145450 |
0.705 |
|
| 2014 |
Castaño-Cerezo S, Bernal V, Post H, Fuhrer T, Cappadona S, Sánchez-Díaz NC, Sauer U, Heck AJ, Altelaar AF, Cánovas M. Protein acetylation affects acetate metabolism, motility and acid stress response in Escherichia coli. Molecular Systems Biology. 10: 762. PMID 25518064 DOI: 10.15252/Msb.20145227 |
0.372 |
|
| 2014 |
Low TY, Peng M, Magliozzi R, Mohammed S, Guardavaccaro D, Heck AJ. A systems-wide screen identifies substrates of the SCFβTrCP ubiquitin ligase. Science Signaling. 7: rs8. PMID 25515538 DOI: 10.1126/Scisignal.2005882 |
0.367 |
|
| 2014 |
Hussein SM, Puri MC, Tonge PD, Benevento M, Corso AJ, Clancy JL, Mosbergen R, Li M, Lee DS, Cloonan N, Wood DL, Munoz J, Middleton R, Korn O, Patel HR, ... ... Heck AJ, et al. Genome-wide characterization of the routes to pluripotency. Nature. 516: 198-206. PMID 25503233 DOI: 10.1038/Nature14046 |
0.306 |
|
| 2014 |
Benevento M, Tonge PD, Puri MC, Hussein SM, Cloonan N, Wood DL, Grimmond SM, Nagy A, Munoz J, Heck AJ. Proteome adaptation in cell reprogramming proceeds via distinct transcriptional networks. Nature Communications. 5: 5613. PMID 25494451 DOI: 10.1038/Ncomms6613 |
0.348 |
|
| 2014 |
Marino F, Cristobal A, Binai NA, Bache N, Heck AJ, Mohammed S. Characterization and usage of the EASY-spray technology as part of an online 2D SCX-RP ultra-high pressure system. The Analyst. 139: 6520-8. PMID 25346955 DOI: 10.1039/C4An01568A |
0.352 |
|
| 2014 |
Magliozzi R, Kim J, Low TY, Heck AJ, Guardavaccaro D. Degradation of Tiam1 by casein kinase 1 and the SCFβTrCP ubiquitin ligase controls the duration of mTOR-S6K signaling. The Journal of Biological Chemistry. 289: 27400-9. PMID 25124033 DOI: 10.1074/Jbc.M114.575571 |
0.305 |
|
| 2014 |
Muñoz J, Heck AJ. From the human genome to the human proteome. Angewandte Chemie (International Ed. in English). 53: 10864-6. PMID 25079383 DOI: 10.1002/Anie.201406545 |
0.401 |
|
| 2014 |
Matheron L, van den Toorn H, Heck AJ, Mohammed S. Characterization of biases in phosphopeptide enrichment by Ti(4+)-immobilized metal affinity chromatography and TiO2 using a massive synthetic library and human cell digests. Analytical Chemistry. 86: 8312-20. PMID 25068997 DOI: 10.1021/Ac501803Z |
0.328 |
|
| 2014 |
van de Waterbeemd M, Lössl P, Gautier V, Marino F, Yamashita M, Conti E, Scholten A, Heck AJ. Simultaneous assessment of kinetic, site-specific, and structural aspects of enzymatic protein phosphorylation. Angewandte Chemie (International Ed. in English). 53: 9660-4. PMID 25044833 DOI: 10.1002/Anie.201404637 |
0.415 |
|
| 2014 |
Snijder J, Heck AJ. Analytical approaches for size and mass analysis of large protein assemblies. Annual Review of Analytical Chemistry (Palo Alto, Calif.). 7: 43-64. PMID 25014341 DOI: 10.1146/Annurev-Anchem-071213-020015 |
0.368 |
|
| 2014 |
Binai NA, Bisschops MM, van Breukelen B, Mohammed S, Loeff L, Pronk JT, Heck AJ, Daran-Lapujade P, Slijper M. Proteome adaptation of Saccharomyces cerevisiae to severe calorie restriction in Retentostat cultures. Journal of Proteome Research. 13: 3542-53. PMID 25000127 DOI: 10.1021/Pr5003388 |
0.315 |
|
| 2014 |
Pinkse MW, Heck AJ. Essential enrichment strategies in phosphoproteomics. Drug Discovery Today. Technologies. 3: 331-7. PMID 24980537 DOI: 10.1016/J.Ddtec.2006.09.009 |
0.361 |
|
| 2014 |
Gavin AC, Heck A. Expanding the frontiers in proteomics. Drug Discovery Today. Technologies. 3: 315-6. PMID 24980534 DOI: 10.1016/J.Ddtec.2006.09.016 |
0.351 |
|
| 2014 |
Liu F, van Breukelen B, Heck AJ. Facilitating protein disulfide mapping by a combination of pepsin digestion, electron transfer higher energy dissociation (EThcD), and a dedicated search algorithm SlinkS. Molecular & Cellular Proteomics : McP. 13: 2776-86. PMID 24980484 DOI: 10.1074/Mcp.O114.039057 |
0.387 |
|
| 2014 |
van Duijn E, Heck AJ. Mass spectrometric analysis of intact macromolecular chaperone complexes. Drug Discovery Today. Technologies. 3: 21-7. PMID 24980098 DOI: 10.1016/J.Ddtec.2006.03.008 |
0.389 |
|
| 2014 |
Kleppe R, Rosati S, Jorge-Finnigan A, Alvira S, Ghorbani S, Haavik J, Valpuesta JM, Heck AJ, Martinez A. Phosphorylation dependence and stoichiometry of the complex formed by tyrosine hydroxylase and 14-3-3γ. Molecular & Cellular Proteomics : McP. 13: 2017-30. PMID 24947669 DOI: 10.1074/Mcp.M113.035709 |
0.305 |
|
| 2014 |
Corradini E, Vallur R, Raaijmakers LM, Feil S, Feil R, Heck AJ, Scholten A. Alterations in the cerebellar (Phospho)proteome of a cyclic guanosine monophosphate (cGMP)-dependent protein kinase knockout mouse. Molecular & Cellular Proteomics : McP. 13: 2004-16. PMID 24925903 DOI: 10.1074/Mcp.M113.035154 |
0.375 |
|
| 2014 |
Kelstrup CD, Frese C, Heck AJ, Olsen JV, Nielsen ML. Analytical utility of mass spectral binning in proteomic experiments by SPectral Immonium Ion Detection (SPIID). Molecular & Cellular Proteomics : McP. 13: 1914-24. PMID 24895383 DOI: 10.1074/Mcp.O113.035915 |
0.369 |
|
| 2014 |
Paardekooper Overman J, Yi JS, Bonetti M, Soulsby M, Preisinger C, Stokes MP, Hui L, Silva JC, Overvoorde J, Giansanti P, Heck AJ, Kontaridis MI, den Hertog J, Bennett AM. PZR coordinates Shp2 Noonan and LEOPARD syndrome signaling in zebrafish and mice. Molecular and Cellular Biology. 34: 2874-89. PMID 24865967 DOI: 10.1128/Mcb.00135-14 |
0.302 |
|
| 2014 |
de Graaf EL, Giansanti P, Altelaar AF, Heck AJ. Single-step enrichment by Ti4+-IMAC and label-free quantitation enables in-depth monitoring of phosphorylation dynamics with high reproducibility and temporal resolution. Molecular & Cellular Proteomics : McP. 13: 2426-34. PMID 24850871 DOI: 10.1074/Mcp.O113.036608 |
0.32 |
|
| 2014 |
Giansanti P, Preisinger C, Huber KV, Gridling M, Superti-Furga G, Bennett KL, Heck AJ. Evaluating the promiscuous nature of tyrosine kinase inhibitors assessed in A431 epidermoid carcinoma cells by both chemical- and phosphoproteomics. Acs Chemical Biology. 9: 1490-8. PMID 24804581 DOI: 10.1021/Cb500116C |
0.318 |
|
| 2014 |
Snijder J, van de Waterbeemd M, Damoc E, Denisov E, Grinfeld D, Bennett A, Agbandje-McKenna M, Makarov A, Heck AJ. Defining the stoichiometry and cargo load of viral and bacterial nanoparticles by Orbitrap mass spectrometry. Journal of the American Chemical Society. 136: 7295-9. PMID 24787140 DOI: 10.1021/Ja502616Y |
0.331 |
|
| 2014 |
Bereszczak JZ, Watts NR, Wingfield PT, Steven AC, Heck AJ. Assessment of differences in the conformational flexibility of hepatitis B virus core-antigen and e-antigen by hydrogen deuterium exchange-mass spectrometry. Protein Science : a Publication of the Protein Society. 23: 884-96. PMID 24715628 DOI: 10.1002/Pro.2470 |
0.338 |
|
| 2014 |
Lössl P, Snijder J, Heck AJ. Boundaries of mass resolution in native mass spectrometry. Journal of the American Society For Mass Spectrometry. 25: 906-17. PMID 24700121 DOI: 10.1007/S13361-014-0874-3 |
0.372 |
|
| 2014 |
Guerreiro AC, Benevento M, Lehmann R, van Breukelen B, Post H, Giansanti P, Maarten Altelaar AF, Axmann IM, Heck AJ. Daily rhythms in the cyanobacterium synechococcus elongatus probed by high-resolution mass spectrometry-based proteomics reveals a small defined set of cyclic proteins. Molecular & Cellular Proteomics : McP. 13: 2042-55. PMID 24677030 DOI: 10.1074/Mcp.M113.035840 |
0.371 |
|
| 2014 |
Rosati S, Yang Y, Barendregt A, Heck AJ. Detailed mass analysis of structural heterogeneity in monoclonal antibodies using native mass spectrometry. Nature Protocols. 9: 967-76. PMID 24675736 DOI: 10.1038/Nprot.2014.057 |
0.396 |
|
| 2014 |
Snijder J, Benevento M, Moyer CL, Reddy V, Nemerow GR, Heck AJ. The cleaved N-terminus of pVI binds peripentonal hexons in mature adenovirus. Journal of Molecular Biology. 426: 1971-9. PMID 24613303 DOI: 10.1016/J.Jmb.2014.02.022 |
0.41 |
|
| 2014 |
Benevento M, Di Palma S, Snijder J, Moyer CL, Reddy VS, Nemerow GR, Heck AJ. Adenovirus composition, proteolysis, and disassembly studied by in-depth qualitative and quantitative proteomics. The Journal of Biological Chemistry. 289: 11421-30. PMID 24591515 DOI: 10.1074/Jbc.M113.537498 |
0.395 |
|
| 2014 |
Rurup WF, Snijder J, Koay MS, Heck AJ, Cornelissen JJ. Self-sorting of foreign proteins in a bacterial nanocompartment. Journal of the American Chemical Society. 136: 3828-32. PMID 24527660 DOI: 10.1021/Ja410891C |
0.315 |
|
| 2014 |
D'Annibale S, Kim J, Magliozzi R, Low TY, Mohammed S, Heck AJ, Guardavaccaro D. Proteasome-dependent degradation of transcription factor activating enhancer-binding protein 4 (TFAP4) controls mitotic division. The Journal of Biological Chemistry. 289: 7730-7. PMID 24500709 DOI: 10.1074/Jbc.M114.549535 |
0.317 |
|
| 2014 |
Snijder J, Burnley RJ, Wiegard A, Melquiond AS, Bonvin AM, Axmann IM, Heck AJ. Insight into cyanobacterial circadian timing from structural details of the KaiB-KaiC interaction. Proceedings of the National Academy of Sciences of the United States of America. 111: 1379-84. PMID 24474762 DOI: 10.1073/Pnas.1314326111 |
0.324 |
|
| 2014 |
Veesler D, Khayat R, Krishnamurthy S, Snijder J, Huang RK, Heck AJ, Anand GS, Johnson JE. Architecture of a dsDNA viral capsid in complex with its maturation protease. Structure (London, England : 1993). 22: 230-7. PMID 24361271 DOI: 10.1016/J.Str.2013.11.007 |
0.313 |
|
| 2014 |
Bereszczak JZ, Havlik M, Weiss VU, Marchetti-Deschmann M, van Duijn E, Watts NR, Wingfield PT, Allmaier G, Steven AC, Heck AJ. Sizing up large protein complexes by electrospray ionisation-based electrophoretic mobility and native mass spectrometry: morphology selective binding of Fabs to hepatitis B virus capsids. Analytical and Bioanalytical Chemistry. 406: 1437-46. PMID 24357008 DOI: 10.1007/S00216-013-7548-Z |
0.321 |
|
| 2014 |
Thompson NJ, Hendriks LJ, de Kruif J, Throsby M, Heck AJ. Complex mixtures of antibodies generated from a single production qualitatively and quantitatively evaluated by native Orbitrap mass spectrometry. Mabs. 6: 197-203. PMID 24351421 DOI: 10.4161/Mabs.27126 |
0.325 |
|
| 2014 |
Peng M, Scholten A, Heck AJ, van Breukelen B. Identification of enriched PTM crosstalk motifs from large-scale experimental data sets. Journal of Proteome Research. 13: 249-59. PMID 24087892 DOI: 10.1021/Pr4005579 |
0.381 |
|
| 2014 |
Thompson NJ, Rosati S, Heck AJ. Performing native mass spectrometry analysis on therapeutic antibodies. Methods (San Diego, Calif.). 65: 11-7. PMID 23688935 DOI: 10.1016/J.Ymeth.2013.05.003 |
0.375 |
|
| 2013 |
Low TY, van Heesch S, van den Toorn H, Giansanti P, Cristobal A, Toonen P, Schafer S, Hübner N, van Breukelen B, Mohammed S, Cuppen E, Heck AJ, Guryev V. Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis. Cell Reports. 5: 1469-78. PMID 24290761 DOI: 10.1016/J.Celrep.2013.10.041 |
0.327 |
|
| 2013 |
Yang Y, Barendregt A, Kamerling JP, Heck AJ. Analyzing protein micro-heterogeneity in chicken ovalbumin by high-resolution native mass spectrometry exposes qualitatively and semi-quantitatively 59 proteoforms. Analytical Chemistry. 85: 12037-45. PMID 24229052 DOI: 10.1021/Ac403057Y |
0.423 |
|
| 2013 |
Tseng YH, Uetrecht C, Yang SC, Barendregt A, Heck AJ, Peng WP. Game-theory-based search engine to automate the mass assignment in complex native electrospray mass spectra. Analytical Chemistry. 85: 11275-83. PMID 24171642 DOI: 10.1021/Ac401940E |
0.353 |
|
| 2013 |
Rosati S, van den Bremer ET, Schuurman J, Parren PW, Kamerling JP, Heck AJ. In-depth qualitative and quantitative analysis of composite glycosylation profiles and other micro-heterogeneity on intact monoclonal antibodies by high-resolution native mass spectrometry using a modified Orbitrap. Mabs. 5: 917-24. PMID 23995615 DOI: 10.4161/Mabs.26282 |
0.325 |
|
| 2013 |
Scholten A, Preisinger C, Corradini E, Bourgonje VJ, Hennrich ML, van Veen TA, Swaminathan PD, Joiner ML, Vos MA, Anderson ME, Heck AJ. Phosphoproteomics study based on in vivo inhibition reveals sites of calmodulin-dependent protein kinase II regulation in the heart. Journal of the American Heart Association. 2: e000318. PMID 23926118 DOI: 10.1161/Jaha.113.000318 |
0.367 |
|
| 2013 |
Mellacheruvu D, Wright Z, Couzens AL, Lambert JP, St-Denis NA, Li T, Miteva YV, Hauri S, Sardiu ME, Low TY, Halim VA, Bagshaw RD, Hubner NC, Al-Hakim A, Bouchard A, ... ... Heck AJ, et al. The CRAPome: a contaminant repository for affinity purification-mass spectrometry data. Nature Methods. 10: 730-6. PMID 23921808 DOI: 10.1038/Nmeth.2557 |
0.404 |
|
| 2013 |
Di Palma S, Zoumaro-Djayoon A, Peng M, Post H, Preisinger C, Munoz J, Heck AJ. Finding the same needles in the haystack? A comparison of phosphotyrosine peptides enriched by immuno-affinity precipitation and metal-based affinity chromatography. Journal of Proteomics. 91: 331-7. PMID 23917254 DOI: 10.1016/J.Jprot.2013.07.024 |
0.357 |
|
| 2013 |
Giansanti P, Stokes MP, Silva JC, Scholten A, Heck AJ. Interrogating cAMP-dependent kinase signaling in Jurkat T cells via a protein kinase A targeted immune-precipitation phosphoproteomics approach. Molecular & Cellular Proteomics : McP. 12: 3350-9. PMID 23882029 DOI: 10.1074/Mcp.O113.028456 |
0.363 |
|
| 2013 |
Mommen GP, Meiring HD, Heck AJ, de Jong AP. Mixed-bed ion exchange chromatography employing a salt-free pH gradient for improved sensitivity and compatibility in MudPIT. Analytical Chemistry. 85: 6608-16. PMID 23772827 DOI: 10.1021/Ac400995E |
0.344 |
|
| 2013 |
Berends CW, Muñoz J, Portegijs V, Schmidt R, Grigoriev I, Boxem M, Akhmanova A, Heck AJ, van den Heuvel S. F-actin asymmetry and the endoplasmic reticulum-associated TCC-1 protein contribute to stereotypic spindle movements in the Caenorhabditis elegans embryo. Molecular Biology of the Cell. 24: 2201-15. PMID 23699393 DOI: 10.1091/Mbc.E13-02-0076 |
0.321 |
|
| 2013 |
Marx H, Lemeer S, Schliep JE, Matheron L, Mohammed S, Cox J, Mann M, Heck AJ, Kuster B. A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics. Nature Biotechnology. 31: 557-64. PMID 23685481 DOI: 10.1038/Nbt.2585 |
0.344 |
|
| 2013 |
Esposito G, Garvey M, Alverdi V, Pettirossi F, Corazza A, Fogolari F, Polano M, Mangione PP, Giorgetti S, Stoppini M, Rekas A, Bellotti V, Heck AJ, Carver JA. Monitoring the interaction between β2-microglobulin and the molecular chaperone αB-crystallin by NMR and mass spectrometry: αB-crystallin dissociates β2-microglobulin oligomers. The Journal of Biological Chemistry. 288: 17844-58. PMID 23645685 DOI: 10.1074/Jbc.M112.448639 |
0.321 |
|
| 2013 |
Bleijerveld OB, van Holten TC, Preisinger C, van der Smagt JJ, Farndale RW, Kleefstra T, Willemsen MH, Urbanus RT, de Groot PG, Heck AJ, Roest M, Scholten A. Targeted phosphotyrosine profiling of glycoprotein VI signaling implicates oligophrenin-1 in platelet filopodia formation. Arteriosclerosis, Thrombosis, and Vascular Biology. 33: 1538-43. PMID 23619296 DOI: 10.1161/Atvbaha.112.300916 |
0.304 |
|
| 2013 |
Halim VA, Alvarez-Fernández M, Xu YJ, Aprelia M, van den Toorn HW, Heck AJ, Mohammed S, Medema RH. Comparative phosphoproteomic analysis of checkpoint recovery identifies new regulators of the DNA damage response. Science Signaling. 6: rs9. PMID 23612710 DOI: 10.1126/Scisignal.2003664 |
0.321 |
|
| 2013 |
Scholten A, Heck AJ. Determining protein concentrations of the human ventricular proteome. Methods in Molecular Biology (Clifton, N.J.). 1005: 11-24. PMID 23606245 DOI: 10.1007/978-1-62703-386-2_2 |
0.389 |
|
| 2013 |
Bereszczak JZ, Rose RJ, van Duijn E, Watts NR, Wingfield PT, Steven AC, Heck AJ. Epitope-distal effects accompany the binding of two distinct antibodies to hepatitis B virus capsids. Journal of the American Chemical Society. 135: 6504-12. PMID 23597076 DOI: 10.1021/Ja402023X |
0.307 |
|
| 2013 |
Krijgsheld P, Nitsche BM, Post H, Levin AM, Müller WH, Heck AJ, Ram AF, Altelaar AF, Wösten HA. Deletion of flbA results in increased secretome complexity and reduced secretion heterogeneity in colonies of Aspergillus niger. Journal of Proteome Research. 12: 1808-19. PMID 23461488 DOI: 10.1021/Pr301154W |
0.352 |
|
| 2013 |
Snijder J, Rose RJ, Veesler D, Johnson JE, Heck AJ. Studying 18 MDa virus assemblies with native mass spectrometry. Angewandte Chemie (International Ed. in English). 52: 4020-3. PMID 23450509 DOI: 10.1002/Anie.201210197 |
0.404 |
|
| 2013 |
Meijer LA, Zhou H, Chan OY, Altelaar AF, Hennrich ML, Mohammed S, Bos JL, Heck AJ. Quantitative global phosphoproteomics of human umbilical vein endothelial cells after activation of the Rap signaling pathway. Molecular Biosystems. 9: 732-49. PMID 23403867 DOI: 10.1039/C3Mb25524G |
0.357 |
|
| 2013 |
Zhou H, Ye M, Dong J, Corradini E, Cristobal A, Heck AJ, Zou H, Mohammed S. Robust phosphoproteome enrichment using monodisperse microsphere-based immobilized titanium (IV) ion affinity chromatography. Nature Protocols. 8: 461-80. PMID 23391890 DOI: 10.1038/Nprot.2013.010 |
0.381 |
|
| 2013 |
Frese CK, Zhou H, Taus T, Altelaar AF, Mechtler K, Heck AJ, Mohammed S. Unambiguous phosphosite localization using electron-transfer/higher-energy collision dissociation (EThcD). Journal of Proteome Research. 12: 1520-5. PMID 23347405 DOI: 10.1021/Pr301130K |
0.34 |
|
| 2013 |
Altelaar AF, Munoz J, Heck AJ. Next-generation proteomics: towards an integrative view of proteome dynamics. Nature Reviews. Genetics. 14: 35-48. PMID 23207911 DOI: 10.1038/Nrg3356 |
0.396 |
|
| 2013 |
Zhou H, Di Palma S, Preisinger C, Peng M, Polat AN, Heck AJ, Mohammed S. Toward a comprehensive characterization of a human cancer cell phosphoproteome. Journal of Proteome Research. 12: 260-71. PMID 23186163 DOI: 10.1021/Pr300630K |
0.333 |
|
| 2013 |
Thompson NJ, Rosati S, Rose RJ, Heck AJ. The impact of mass spectrometry on the study of intact antibodies: from post-translational modifications to structural analysis. Chemical Communications (Cambridge, England). 49: 538-48. PMID 23183499 DOI: 10.1039/C2Cc36755F |
0.37 |
|
| 2012 |
Burgers PP, Ma Y, Margarucci L, Mackey M, van der Heyden MA, Ellisman M, Scholten A, Taylor SS, Heck AJ. A small novel A-kinase anchoring protein (AKAP) that localizes specifically protein kinase A-regulatory subunit I (PKA-RI) to the plasma membrane. The Journal of Biological Chemistry. 287: 43789-97. PMID 23115245 DOI: 10.1074/Jbc.M112.395970 |
0.359 |
|
| 2012 |
Nenci S, Piano V, Rosati S, Aliverti A, Pandini V, Fraaije MW, Heck AJ, Edmondson DE, Mattevi A. Precursor of ether phospholipids is synthesized by a flavoenzyme through covalent catalysis. Proceedings of the National Academy of Sciences of the United States of America. 109: 18791-6. PMID 23112191 DOI: 10.1073/Pnas.1215128109 |
0.302 |
|
| 2012 |
Frese CK, Altelaar AF, van den Toorn H, Nolting D, Griep-Raming J, Heck AJ, Mohammed S. Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry. Analytical Chemistry. 84: 9668-73. PMID 23106539 DOI: 10.1021/Ac3025366 |
0.331 |
|
| 2012 |
Di Palma S, Mohammed S, Heck AJ. ZIC-cHILIC as a fractionation method for sensitive and powerful shotgun proteomics. Nature Protocols. 7: 2041-55. PMID 23099486 DOI: 10.1038/Nprot.2012.124 |
0.355 |
|
| 2012 |
Rose RJ, Damoc E, Denisov E, Makarov A, Heck AJ. High-sensitivity Orbitrap mass analysis of intact macromolecular assemblies. Nature Methods. 9: 1084-6. PMID 23064518 DOI: 10.1038/Nmeth.2208 |
0.384 |
|
| 2012 |
Bleijerveld OB, Wijten P, Cappadona S, McClellan EA, Polat AN, Raijmakers R, Sels JW, Colle L, Grasso S, van den Toorn HW, van Breukelen B, Stubbs A, Pasterkamp G, Heck AJ, Hoefer IE, et al. Deep proteome profiling of circulating granulocytes reveals bactericidal/permeability-increasing protein as a biomarker for severe atherosclerotic coronary stenosis. Journal of Proteome Research. 11: 5235-44. PMID 23020738 DOI: 10.1021/Pr3004375 |
0.336 |
|
| 2012 |
Glatter T, Ludwig C, Ahrné E, Aebersold R, Heck AJ, Schmidt A. Large-scale quantitative assessment of different in-solution protein digestion protocols reveals superior cleavage efficiency of tandem Lys-C/trypsin proteolysis over trypsin digestion. Journal of Proteome Research. 11: 5145-56. PMID 23017020 DOI: 10.1021/Pr300273G |
0.398 |
|
| 2012 |
Polat AN, Kraiczek K, Heck AJ, Raijmakers R, Mohammed S. Fully automated isotopic dimethyl labeling and phosphopeptide enrichment using a microfluidic HPLC phosphochip. Analytical and Bioanalytical Chemistry. 404: 2507-12. PMID 22975804 DOI: 10.1007/S00216-012-6395-7 |
0.324 |
|
| 2012 |
van Duijn E, Barbu IM, Barendregt A, Jore MM, Wiedenheft B, Lundgren M, Westra ER, Brouns SJ, Doudna JA, van der Oost J, Heck AJ. Native tandem and ion mobility mass spectrometry highlight structural and modular similarities in clustered-regularly-interspaced shot-palindromic-repeats (CRISPR)-associated protein complexes from Escherichia coli and Pseudomonas aeruginosa. Molecular & Cellular Proteomics : McP. 11: 1430-41. PMID 22918228 DOI: 10.1074/Mcp.M112.020263 |
0.361 |
|
| 2012 |
Rosati S, Thompson NJ, Barendregt A, Hendriks LJ, Bakker AB, de Kruif J, Throsby M, van Duijn E, Heck AJ. Qualitative and semiquantitative analysis of composite mixtures of antibodies by native mass spectrometry. Analytical Chemistry. 84: 7227-32. PMID 22882109 DOI: 10.1021/Ac301611D |
0.346 |
|
| 2012 |
Cappadona S, Baker PR, Cutillas PR, Heck AJ, van Breukelen B. Current challenges in software solutions for mass spectrometry-based quantitative proteomics. Amino Acids. 43: 1087-108. PMID 22821268 DOI: 10.1007/S00726-012-1289-8 |
0.338 |
|
| 2012 |
Kükrer B, Barbu IM, Copps J, Hogan P, Taylor SS, van Duijn E, Heck AJ. Conformational isomers of calcineurin follow distinct dissociation pathways. Journal of the American Society For Mass Spectrometry. 23: 1534-43. PMID 22811075 DOI: 10.1007/S13361-012-0441-8 |
0.354 |
|
| 2012 |
Mommen GP, van de Waterbeemd B, Meiring HD, Kersten G, Heck AJ, de Jong AP. Unbiased selective isolation of protein N-terminal peptides from complex proteome samples using phospho tagging (PTAG) and TiO(2)-based depletion. Molecular & Cellular Proteomics : McP. 11: 832-42. PMID 22729381 DOI: 10.1074/Mcp.O112.018283 |
0.384 |
|
| 2012 |
Cristobal A, Hennrich ML, Giansanti P, Goerdayal SS, Heck AJ, Mohammed S. In-house construction of a UHPLC system enabling the identification of over 4000 protein groups in a single analysis. The Analyst. 137: 3541-8. PMID 22728655 DOI: 10.1039/C2An35445D |
0.366 |
|
| 2012 |
Muñoz J, Stange DE, Schepers AG, van de Wetering M, Koo BK, Itzkovitz S, Volckmann R, Kung KS, Koster J, Radulescu S, Myant K, Versteeg R, Sansom OJ, van Es JH, Barker N, ... ... Heck AJ, et al. The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent '+4' cell markers. The Embo Journal. 31: 3079-91. PMID 22692129 DOI: 10.1038/Emboj.2012.166 |
0.305 |
|
| 2012 |
Peng M, Taouatas N, Cappadona S, van Breukelen B, Mohammed S, Scholten A, Heck AJ. Protease bias in absolute protein quantitation. Nature Methods. 9: 524-5. PMID 22669647 DOI: 10.1038/Nmeth.2031 |
0.358 |
|
| 2012 |
Kovanich D, Cappadona S, Raijmakers R, Mohammed S, Scholten A, Heck AJ. Applications of stable isotope dimethyl labeling in quantitative proteomics. Analytical and Bioanalytical Chemistry. 404: 991-1009. PMID 22644145 DOI: 10.1007/S00216-012-6070-Z |
0.389 |
|
| 2012 |
Di Palma S, Hennrich ML, Heck AJ, Mohammed S. Recent advances in peptide separation by multidimensional liquid chromatography for proteome analysis. Journal of Proteomics. 75: 3791-813. PMID 22561838 DOI: 10.1016/J.Jprot.2012.04.033 |
0.365 |
|
| 2012 |
Aye TT, Low TY, Bjørlykke Y, Barsnes H, Heck AJ, Berven FS. Use of stable isotope dimethyl labeling coupled to selected reaction monitoring to enhance throughput by multiplexing relative quantitation of targeted proteins. Analytical Chemistry. 84: 4999-5006. PMID 22548487 DOI: 10.1021/Ac300596R |
0.393 |
|
| 2012 |
Moreno-Córdoba I, Diago-Navarro E, Barendregt A, Heck AJ, Alfonso C, Díaz-Orejas R, Nieto C, Espinosa M. The toxin-antitoxin proteins relBE2Spn of Streptococcus pneumoniae: characterization and association to their DNA target. Proteins. 80: 1834-46. PMID 22488579 DOI: 10.1002/Prot.24081 |
0.345 |
|
| 2012 |
Krijgsheld P, Altelaar AF, Post H, Ringrose JH, Müller WH, Heck AJ, Wösten HA. Spatially resolving the secretome within the mycelium of the cell factory Aspergillus niger. Journal of Proteome Research. 11: 2807-18. PMID 22443316 DOI: 10.1021/Pr201157B |
0.358 |
|
| 2012 |
van Noort V, Seebacher J, Bader S, Mohammed S, Vonkova I, Betts MJ, Kühner S, Kumar R, Maier T, O'Flaherty M, Rybin V, Schmeisky A, Yus E, Stülke J, Serrano L, ... ... Heck AJ, et al. Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium. Molecular Systems Biology. 8: 571. PMID 22373819 DOI: 10.1038/Msb.2012.4 |
0.385 |
|
| 2012 |
Hennrich ML, van den Toorn HW, Groenewold V, Heck AJ, Mohammed S. Ultra acidic strong cation exchange enabling the efficient enrichment of basic phosphopeptides. Analytical Chemistry. 84: 1804-8. PMID 22303813 DOI: 10.1021/Ac203303T |
0.322 |
|
| 2012 |
Bereszczak JZ, Barbu IM, Tan M, Xia M, Jiang X, van Duijn E, Heck AJ. Structure, stability and dynamics of norovirus P domain derived protein complexes studied by native mass spectrometry. Journal of Structural Biology. 177: 273-82. PMID 22266117 DOI: 10.1016/J.Jsb.2012.01.005 |
0.317 |
|
| 2012 |
Altelaar AF, Heck AJ. Trends in ultrasensitive proteomics. Current Opinion in Chemical Biology. 16: 206-13. PMID 22226769 DOI: 10.1016/J.Cbpa.2011.12.011 |
0.383 |
|
| 2012 |
Altelaar AF, Navarro D, Boekhorst J, van Breukelen B, Snel B, Mohammed S, Heck AJ. Database independent proteomics analysis of the ostrich and human proteome. Proceedings of the National Academy of Sciences of the United States of America. 109: 407-12. PMID 22198768 DOI: 10.1073/Pnas.1108399108 |
0.396 |
|
| 2012 |
Mithoe SC, Boersema PJ, Berke L, Snel B, Heck AJ, Menke FL. Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants. Journal of Proteome Research. 11: 438-48. PMID 22074104 DOI: 10.1021/Pr200893K |
0.353 |
|
| 2012 |
Kovanich D, Aye TT, Heck AJ, Scholten A. Probing the specificity of protein-protein interactions by quantitative chemical proteomics. Methods in Molecular Biology (Clifton, N.J.). 803: 167-81. PMID 22065225 DOI: 10.1007/978-1-61779-364-6_12 |
0.385 |
|
| 2012 |
Choukrallah MA, Kobi D, Martianov I, Pijnappel WW, Mischerikow N, Ye T, Heck AJ, Timmers HT, Davidson I. Interconversion between active and inactive TATA-binding protein transcription complexes in the mouse genome. Nucleic Acids Research. 40: 1446-59. PMID 22013162 DOI: 10.1093/Nar/Gkr802 |
0.318 |
|
| 2012 |
Zoumaro-Djayoon AD, Heck AJ, Muñoz J. Targeted analysis of tyrosine phosphorylation by immuno-affinity enrichment of tyrosine phosphorylated peptides prior to mass spectrometric analysis. Methods (San Diego, Calif.). 56: 268-74. PMID 21945579 DOI: 10.1016/J.Ymeth.2011.09.003 |
0.364 |
|
| 2012 |
Heck AJ, Derrick PJ. Ultrahigh Mass Accuracy in Isotope-Selective Collision-Induced Dissociation Using Correlated Sweep Excitation and Sustained Off-Resonance Irradiation: A Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Case Study on the [M + 2H](2+) Ion of Bradykinin. Analytical Chemistry. 69: 3603-7. PMID 21639284 DOI: 10.1021/Ac970254B |
0.3 |
|
| 2011 |
Munoz J, Low TY, Kok YJ, Chin A, Frese CK, Ding V, Choo A, Heck AJ. The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells. Molecular Systems Biology. 7: 550. PMID 22108792 DOI: 10.1038/Msb.2011.84 |
0.349 |
|
| 2011 |
Helbig AO, Daran-Lapujade P, van Maris AJ, de Hulster EA, de Ridder D, Pronk JT, Heck AJ, Slijper M. The diversity of protein turnover and abundance under nitrogen-limited steady-state conditions in Saccharomyces cerevisiae. Molecular Biosystems. 7: 3316-26. PMID 21984188 DOI: 10.1039/C1Mb05250K |
0.38 |
|
| 2011 |
Vogels MW, van Balkom BW, Heck AJ, de Haan CA, Rottier PJ, Batenburg JJ, Kaloyanova DV, Helms JB. Quantitative proteomic identification of host factors involved in the Salmonella typhimurium infection cycle. Proteomics. 11: 4477-91. PMID 21919203 DOI: 10.1002/Pmic.201100224 |
0.377 |
|
| 2011 |
Di Palma S, Raijmakers R, Heck AJ, Mohammed S. Evaluation of the deuterium isotope effect in zwitterionic hydrophilic interaction liquid chromatography separations for implementation in a quantitative proteomic approach. Analytical Chemistry. 83: 8352-6. PMID 21899334 DOI: 10.1021/Ac2018074 |
0.368 |
|
| 2011 |
Rose RJ, Labrijn AF, van den Bremer ET, Loverix S, Lasters I, van Berkel PH, van de Winkel JG, Schuurman J, Parren PW, Heck AJ. Quantitative analysis of the interaction strength and dynamics of human IgG4 half molecules by native mass spectrometry. Structure (London, England : 1993). 19: 1274-82. PMID 21893287 DOI: 10.1016/J.Str.2011.06.016 |
0.346 |
|
| 2011 |
Galli M, Muñoz J, Portegijs V, Boxem M, Grill SW, Heck AJ, van den Heuvel S. aPKC phosphorylates NuMA-related LIN-5 to position the mitotic spindle during asymmetric division. Nature Cell Biology. 13: 1132-8. PMID 21857670 DOI: 10.1038/Ncb2315 |
0.326 |
|
| 2011 |
Boekhorst J, Boersema PJ, Tops BB, van Breukelen B, Heck AJ, Snel B. Evaluating experimental bias and completeness in comparative phosphoproteomics analysis. Plos One. 6: e23276. PMID 21853102 DOI: 10.1371/Journal.Pone.0023276 |
0.312 |
|
| 2011 |
Hennrich ML, Groenewold V, Kops GJ, Heck AJ, Mohammed S. Improving depth in phosphoproteomics by using a strong cation exchange-weak anion exchange-reversed phase multidimensional separation approach. Analytical Chemistry. 83: 7137-43. PMID 21815630 DOI: 10.1021/Ac2015068 |
0.332 |
|
| 2011 |
Uetrecht C, Heck AJ. Modern biomolecular mass spectrometry and its role in studying virus structure, dynamics, and assembly. Angewandte Chemie (International Ed. in English). 50: 8248-62. PMID 21793131 DOI: 10.1002/Anie.201008120 |
0.385 |
|
| 2011 |
Garcia-Alles LF, Giacometti G, Versluis C, Maveyraud L, de Paepe D, Guiard J, Tranier S, Gilleron M, Prandi J, Hanau D, Heck AJ, Mori L, De Libero G, Puzo G, Mourey L, et al. Crystal structure of human CD1e reveals a groove suited for lipid-exchange processes. Proceedings of the National Academy of Sciences of the United States of America. 108: 13230-5. PMID 21788486 DOI: 10.1073/Pnas.1105627108 |
0.316 |
|
| 2011 |
De Vos D, Frederiks F, Terweij M, van Welsem T, Verzijlbergen KF, Iachina E, de Graaf EL, Altelaar AF, Oudgenoeg G, Heck AJ, Krijgsveld J, Bakker BM, van Leeuwen F. Progressive methylation of ageing histones by Dot1 functions as a timer. Embo Reports. 12: 956-62. PMID 21760613 DOI: 10.1038/Embor.2011.131 |
0.548 |
|
| 2011 |
Monti MC, Cohen SX, Fish A, Winterwerp HH, Barendregt A, Friedhoff P, Perrakis A, Heck AJ, Sixma TK, van den Heuvel RH, Lebbink JH. Native mass spectrometry provides direct evidence for DNA mismatch-induced regulation of asymmetric nucleotide binding in mismatch repair protein MutS. Nucleic Acids Research. 39: 8052-64. PMID 21737427 DOI: 10.1093/Nar/Gkr498 |
0.3 |
|
| 2011 |
de Graaf EL, Altelaar AF, van Breukelen B, Mohammed S, Heck AJ. Improving SRM assay development: a global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra. Journal of Proteome Research. 10: 4334-41. PMID 21726076 DOI: 10.1021/Pr200156B |
0.334 |
|
| 2011 |
Zhou H, Low TY, Hennrich ML, van der Toorn H, Schwend T, Zou H, Mohammed S, Heck AJ. Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti (IV) based IMAC enrichment. Molecular & Cellular Proteomics : McP. 10: M110.006452. PMID 21715320 DOI: 10.1074/Mcp.M110.006452 |
0.37 |
|
| 2011 |
Scholten A, Mohammed S, Low TY, Zanivan S, van Veen TA, Delanghe B, Heck AJ. In-depth quantitative cardiac proteomics combining electron transfer dissociation and the metalloendopeptidase Lys-N with the SILAC mouse. Molecular & Cellular Proteomics : McP. 10: O111.008474. PMID 21705516 DOI: 10.1074/Mcp.O111.008474 |
0.398 |
|
| 2011 |
Di Palma S, Stange D, van de Wetering M, Clevers H, Heck AJ, Mohammed S. Highly sensitive proteome analysis of FACS-sorted adult colon stem cells. Journal of Proteome Research. 10: 3814-9. PMID 21696214 DOI: 10.1021/Pr200367P |
0.349 |
|
| 2011 |
Pinkse MW, Lemeer S, Heck AJ. A protocol on the use of titanium dioxide chromatography for phosphoproteomics. Methods in Molecular Biology (Clifton, N.J.). 753: 215-28. PMID 21604125 DOI: 10.1007/978-1-61779-148-2_14 |
0.375 |
|
| 2011 |
Taouatas N, Mohammed S, Heck AJ. Exploring new proteome space: combining Lys-N proteolytic digestion and strong cation exchange (SCX) separation in peptide-centric MS-driven proteomics. Methods in Molecular Biology (Clifton, N.J.). 753: 157-67. PMID 21604122 DOI: 10.1007/978-1-61779-148-2_11 |
0.366 |
|
| 2011 |
Margarucci L, Roest M, Preisinger C, Bleijerveld OB, van Holten TC, Heck AJ, Scholten A. Collagen stimulation of platelets induces a rapid spatial response of cAMP and cGMP signaling scaffolds. Molecular Biosystems. 7: 2311-9. PMID 21597619 DOI: 10.1039/C1Mb05145H |
0.304 |
|
| 2011 |
Di Palma S, Boersema PJ, Heck AJ, Mohammed S. Zwitterionic hydrophilic interaction liquid chromatography (ZIC-HILIC and ZIC-cHILIC) provide high resolution separation and increase sensitivity in proteome analysis. Analytical Chemistry. 83: 3440-7. PMID 21443167 DOI: 10.1021/Ac103312E |
0.364 |
|
| 2011 |
Ding VM, Boersema PJ, Foong LY, Preisinger C, Koh G, Natarajan S, Lee DY, Boekhorst J, Snel B, Lemeer S, Heck AJ, Choo A. Tyrosine phosphorylation profiling in FGF-2 stimulated human embryonic stem cells. Plos One. 6: e17538. PMID 21437283 DOI: 10.1371/Journal.Pone.0017538 |
0.318 |
|
| 2011 |
Frese CK, Altelaar AF, Hennrich ML, Nolting D, Zeller M, Griep-Raming J, Heck AJ, Mohammed S. Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos. Journal of Proteome Research. 10: 2377-88. PMID 21413819 DOI: 10.1021/Pr1011729 |
0.348 |
|
| 2011 |
Tseng YH, Uetrecht C, Heck AJ, Peng WP. Interpreting the charge state assignment in electrospray mass spectra of bioparticles. Analytical Chemistry. 83: 1960-8. PMID 21361376 DOI: 10.1021/Ac102676Z |
0.311 |
|
| 2011 |
Mischerikow N, Heck AJ. Targeted large-scale analysis of protein acetylation. Proteomics. 11: 571-89. PMID 21246731 DOI: 10.1002/Pmic.201000397 |
0.352 |
|
| 2011 |
Dewalick S, Bexkens ML, van Balkom BW, Wu YP, Smit CH, Hokke CH, de Groot PG, Heck AJ, Tielens AG, van Hellemond JJ. The proteome of the insoluble Schistosoma mansoni eggshell skeleton. International Journal For Parasitology. 41: 523-32. PMID 21236260 DOI: 10.1016/J.Ijpara.2010.12.005 |
0.393 |
|
| 2011 |
Karagöz GE, Duarte AM, Ippel H, Uetrecht C, Sinnige T, van Rosmalen M, Hausmann J, Heck AJ, Boelens R, Rüdiger SG. N-terminal domain of human Hsp90 triggers binding to the cochaperone p23. Proceedings of the National Academy of Sciences of the United States of America. 108: 580-5. PMID 21183720 DOI: 10.1073/Pnas.1011867108 |
0.315 |
|
| 2010 |
van Beers JJ, Raijmakers R, Alexander LE, Stammen-Vogelzangs J, Lokate AM, Heck AJ, Schasfoort RB, Pruijn GJ. Mapping of citrullinated fibrinogen B-cell epitopes in rheumatoid arthritis by imaging surface plasmon resonance. Arthritis Research & Therapy. 12: R219. PMID 21182780 DOI: 10.1186/Ar3205 |
0.325 |
|
| 2010 |
Snijder J, Rose RJ, Raijmakers R, Heck AJ. Site-specific methionine oxidation in calmodulin affects structural integrity and interaction with Ca2+/calmodulin-dependent protein kinase II. Journal of Structural Biology. 174: 187-95. PMID 21156208 DOI: 10.1016/J.Jsb.2010.12.002 |
0.307 |
|
| 2010 |
Helbig AO, Rosati S, Pijnappel PW, van Breukelen B, Timmers MH, Mohammed S, Slijper M, Heck AJ. Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels. Bmc Genomics. 11: 685. PMID 21126336 DOI: 10.1186/1471-2164-11-685 |
0.347 |
|
| 2010 |
Wijte D, van Baar BL, Heck AJ, Altelaar AF. Probing the proteome response to toluene exposure in the solvent tolerant Pseudomonas putida S12. Journal of Proteome Research. 10: 394-403. PMID 20979388 DOI: 10.1021/Pr100401N |
0.351 |
|
| 2010 |
Raijmakers R, Neerincx P, Mohammed S, Heck AJ. Cleavage specificities of the brother and sister proteases Lys-C and Lys-N. Chemical Communications (Cambridge, England). 46: 8827-9. PMID 20953479 DOI: 10.1039/C0Cc02523B |
0.306 |
|
| 2010 |
Hennrich ML, Mohammed S, Altelaar AF, Heck AJ. Dimethyl isotope labeling assisted de novo peptide sequencing. Journal of the American Society For Mass Spectrometry. 21: 1957-65. PMID 20850342 DOI: 10.1016/J.Jasms.2010.08.007 |
0.353 |
|
| 2010 |
Kim S, Mischerikow N, Bandeira N, Navarro JD, Wich L, Mohammed S, Heck AJ, Pevzner PA. The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search. Molecular & Cellular Proteomics : McP. 9: 2840-52. PMID 20829449 DOI: 10.1074/Mcp.M110.003731 |
0.344 |
|
| 2010 |
Mischerikow N, van Nierop P, Li KW, Bernstein HG, Smit AB, Heck AJ, Altelaar AF. Gaining efficiency by parallel quantification and identification of iTRAQ-labeled peptides using HCD and decision tree guided CID/ETD on an LTQ Orbitrap. The Analyst. 135: 2643-52. PMID 20714520 DOI: 10.1039/C0An00267D |
0.348 |
|
| 2010 |
Aye TT, Scholten A, Taouatas N, Varro A, Van Veen TA, Vos MA, Heck AJ. Proteome-wide protein concentrations in the human heart. Molecular Biosystems. 6: 1917-27. PMID 20596566 DOI: 10.1039/C004495D |
0.404 |
|
| 2010 |
Taouatas N, Heck AJ, Mohammed S. Evaluation of metalloendopeptidase Lys-N protease performance under different sample handling conditions. Journal of Proteome Research. 9: 4282-8. PMID 20540561 DOI: 10.1021/Pr100341E |
0.338 |
|
| 2010 |
Staals RH, Bronkhorst AW, Schilders G, Slomovic S, Schuster G, Heck AJ, Raijmakers R, Pruijn GJ. Dis3-like 1: a novel exoribonuclease associated with the human exosome. The Embo Journal. 29: 2358-67. PMID 20531389 DOI: 10.1038/Emboj.2010.122 |
0.31 |
|
| 2010 |
Heck AJ. At the interface of interaction proteomics and structural biology. Molecular & Cellular Proteomics : McP. 9: 1633. PMID 20522653 DOI: 10.1074/Mcp.E110.001511 |
0.413 |
|
| 2010 |
Girardi E, Wang J, Mac TT, Versluis C, Bhowruth V, Besra G, Heck AJ, Van Rhijn I, Zajonc DM. Crystal structure of bovine CD1b3 with endogenously bound ligands. Journal of Immunology (Baltimore, Md. : 1950). 185: 376-86. PMID 20519644 DOI: 10.4049/Jimmunol.1000042 |
0.313 |
|
| 2010 |
Spedale G, Mischerikow N, Heck AJ, Timmers HT, Pijnappel WW. Identification of Pep4p as the protease responsible for formation of the SAGA-related SLIK protein complex. The Journal of Biological Chemistry. 285: 22793-9. PMID 20498363 DOI: 10.1074/Jbc.M110.108787 |
0.373 |
|
| 2010 |
Alpert AJ, Petritis K, Kangas L, Smith RD, Mechtler K, Mitulović G, Mohammed S, Heck AJ. Peptide orientation affects selectivity in ion-exchange chromatography. Analytical Chemistry. 82: 5253-9. PMID 20481592 DOI: 10.1021/Ac100651K |
0.311 |
|
| 2010 |
Shoemaker GK, van Duijn E, Crawford SE, Uetrecht C, Baclayon M, Roos WH, Wuite GJ, Estes MK, Prasad BV, Heck AJ. Norwalk virus assembly and stability monitored by mass spectrometry. Molecular & Cellular Proteomics : McP. 9: 1742-51. PMID 20418222 DOI: 10.1074/Mcp.M900620-Mcp200 |
0.334 |
|
| 2010 |
Kovanich D, van der Heyden MA, Aye TT, van Veen TA, Heck AJ, Scholten A. Sphingosine kinase interacting protein is an A-kinase anchoring protein specific for type I cAMP-dependent protein kinase. Chembiochem : a European Journal of Chemical Biology. 11: 963-71. PMID 20394097 DOI: 10.1002/Cbic.201000058 |
0.36 |
|
| 2010 |
Mischerikow N, Altelaar AF, Navarro JD, Mohammed S, Heck AJ. Comparative assessment of site assignments in CID and electron transfer dissociation spectra of phosphopeptides discloses limited relocation of phosphate groups. Molecular & Cellular Proteomics : McP. 9: 2140-8. PMID 20233845 DOI: 10.1074/Mcp.M900619-Mcp200 |
0.348 |
|
| 2010 |
Christis C, Fullaondo A, Schildknegt D, Mkrtchian S, Heck AJ, Braakman I. Regulated increase in folding capacity prevents unfolded protein stress in the ER. Journal of Cell Science. 123: 787-94. PMID 20144991 DOI: 10.1242/Jcs.041111 |
0.305 |
|
| 2010 |
Fu CY, Uetrecht C, Kang S, Morais MC, Heck AJ, Walter MR, Prevelige PE. A docking model based on mass spectrometric and biochemical data describes phage packaging motor incorporation. Molecular & Cellular Proteomics : McP. 9: 1764-73. PMID 20124351 DOI: 10.1074/Mcp.M900625-Mcp200 |
0.372 |
|
| 2010 |
Helbig AO, Heck AJ, Slijper M. Exploring the membrane proteome--challenges and analytical strategies. Journal of Proteomics. 73: 868-78. PMID 20096812 DOI: 10.1016/J.Jprot.2010.01.005 |
0.351 |
|
| 2010 |
Van Hoof D, Dormeyer W, Braam SR, Passier R, Monshouwer-Kloots J, Ward-van Oostwaard D, Heck AJ, Krijgsveld J, Mummery CL. Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes. Journal of Proteome Research. 9: 1610-8. PMID 20088484 DOI: 10.1021/Pr901138A |
0.619 |
|
| 2010 |
van Breukelen B, Georgiou A, Drugan MM, Taouatas N, Mohammed S, Heck AJ. LysNDeNovo: an algorithm enabling de novo sequencing of Lys-N generated peptides fragmented by electron transfer dissociation. Proteomics. 10: 1196-201. PMID 20077410 DOI: 10.1002/Pmic.200900405 |
0.328 |
|
| 2010 |
Raijmakers R, Kraiczek K, de Jong AP, Mohammed S, Heck AJ. Exploring the human leukocyte phosphoproteome using a microfluidic reversed-phase-TiO2-reversed-phase high-performance liquid chromatography phosphochip coupled to a quadrupole time-of-flight mass spectrometer. Analytical Chemistry. 82: 824-32. PMID 20058876 DOI: 10.1021/Ac901764G |
0.39 |
|
| 2010 |
Barbu IM, Smith DF, van Breukelen B, van der Burgt YE, Duursma MC, Heck AJ, Heeren RM, Krijgsveld J. On-the-fly targeted selection of labeled peptides in liquid chromatography/mass spectrometry based quantitative proteomics. Rapid Communications in Mass Spectrometry : Rcm. 24: 239-41. PMID 20013948 DOI: 10.1002/Rcm.4385 |
0.6 |
|
| 2010 |
Gouw JW, Krijgsveld J, Heck AJ. Quantitative proteomics by metabolic labeling of model organisms. Molecular & Cellular Proteomics : McP. 9: 11-24. PMID 19955089 DOI: 10.1074/Mcp.R900001-Mcp200 |
0.634 |
|
| 2010 |
Tops BB, Gauci S, Heck AJ, Krijgsveld J. Worms from venus and mars: proteomics profiling of sexual differences in Caenorhabditis elegans using in vivo 15N isotope labeling. Journal of Proteome Research. 9: 341-51. PMID 19916504 DOI: 10.1021/Pr900678J |
0.62 |
|
| 2010 |
Mortensen P, Gouw JW, Olsen JV, Ong SE, Rigbolt KT, Bunkenborg J, Cox J, Foster LJ, Heck AJ, Blagoev B, Andersen JS, Mann M. MSQuant, an open source platform for mass spectrometry-based quantitative proteomics. Journal of Proteome Research. 9: 393-403. PMID 19888749 DOI: 10.1021/Pr900721E |
0.38 |
|
| 2010 |
Boersema PJ, Foong LY, Ding VM, Lemeer S, van Breukelen B, Philp R, Boekhorst J, Snel B, den Hertog J, Choo AB, Heck AJ. In-depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immunoaffinity purification and stable isotope dimethyl labeling. Molecular & Cellular Proteomics : McP. 9: 84-99. PMID 19770167 DOI: 10.1074/Mcp.M900291-Mcp200 |
0.374 |
|
| 2010 |
Helbig AO, de Groot MJ, van Gestel RA, Mohammed S, de Hulster EA, Luttik MA, Daran-Lapujade P, Pronk JT, Heck AJ, Slijper M. A three-way proteomics strategy allows differential analysis of yeast mitochondrial membrane protein complexes under anaerobic and aerobic conditions. Proteomics. 9: 4787-98. PMID 19750512 DOI: 10.1002/Pmic.200800951 |
0.342 |
|
| 2009 |
Uetrecht C, Rose RJ, van Duijn E, Lorenzen K, Heck AJ. Ion mobility mass spectrometry of proteins and protein assemblies. Chemical Society Reviews. 39: 1633-55. PMID 20419213 DOI: 10.1039/B914002F |
0.401 |
|
| 2009 |
van Anken E, Pena F, Hafkemeijer N, Christis C, Romijn EP, Grauschopf U, Oorschot VM, Pertel T, Engels S, Ora A, Lástun V, Glockshuber R, Klumperman J, Heck AJ, Luban J, et al. Efficient IgM assembly and secretion require the plasma cell induced endoplasmic reticulum protein pERp1. Proceedings of the National Academy of Sciences of the United States of America. 106: 17019-24. PMID 19805154 DOI: 10.1073/Pnas.0903036106 |
0.343 |
|
| 2009 |
van Gestel RA, van Solinge WW, van der Toorn HW, Rijksen G, Heck AJ, van Wijk R, Slijper M. Quantitative erythrocyte membrane proteome analysis with Blue-native/SDS PAGE. Journal of Proteomics. 73: 456-65. PMID 19778645 DOI: 10.1016/J.Jprot.2009.08.010 |
0.333 |
|
| 2009 |
de Wit NC, Heck AJ, Thornton S. The effect of oxytocin and an oxytocin antagonist on the human myometrial proteome. Reproductive Sciences (Thousand Oaks, Calif.). 17: 40-6. PMID 19767541 DOI: 10.1177/1933719109345287 |
0.338 |
|
| 2009 |
Mischerikow N, Spedale G, Altelaar AF, Timmers HT, Pijnappel WW, Heck AJ. In-depth profiling of post-translational modifications on the related transcription factor complexes TFIID and SAGA. Journal of Proteome Research. 8: 5020-30. PMID 19731963 DOI: 10.1021/Pr900449E |
0.359 |
|
| 2009 |
Hennrich ML, Boersema PJ, van den Toorn H, Mischerikow N, Heck AJ, Mohammed S. Effect of chemical modifications on peptide fragmentation behavior upon electron transfer induced dissociation. Analytical Chemistry. 81: 7814-22. PMID 19689115 DOI: 10.1021/Ac901108G |
0.335 |
|
| 2009 |
Raijmakers R, Heck AJ, Mohammed S. Assessing biological variation and protein processing in primary human leukocytes by automated multiplex stable isotope labeling coupled to 2 dimensional peptide separation. Molecular Biosystems. 5: 992-1003. PMID 19668865 DOI: 10.1039/B901873E |
0.421 |
|
| 2009 |
Van Hoof D, Muñoz J, Braam SR, Pinkse MW, Linding R, Heck AJ, Mummery CL, Krijgsveld J. Phosphorylation dynamics during early differentiation of human embryonic stem cells. Cell Stem Cell. 5: 214-26. PMID 19664995 DOI: 10.1016/J.Stem.2009.05.021 |
0.613 |
|
| 2009 |
Lemeer S, Heck AJ. The phosphoproteomics data explosion. Current Opinion in Chemical Biology. 13: 414-20. PMID 19620020 DOI: 10.1016/J.Cbpa.2009.06.022 |
0.345 |
|
| 2009 |
Sneekes EJ, Han J, Elliot M, Ausio J, Swart R, Heck AJ, Borchers C. Accurate molecular weight analysis of histones using FFE and RP-HPLC on monolithic capillary columns. Journal of Separation Science. 32: 2691-8. PMID 19569095 DOI: 10.1002/Jssc.200800627 |
0.317 |
|
| 2009 |
Lau NC, Kolkman A, van Schaik FM, Mulder KW, Pijnappel WW, Heck AJ, Timmers HT. Human Ccr4-Not complexes contain variable deadenylase subunits. The Biochemical Journal. 422: 443-53. PMID 19558367 DOI: 10.1042/Bj20090500 |
0.332 |
|
| 2009 |
Boersema PJ, Mohammed S, Heck AJ. Phosphopeptide fragmentation and analysis by mass spectrometry. Journal of Mass Spectrometry : Jms. 44: 861-78. PMID 19504542 DOI: 10.1002/Jms.1599 |
0.366 |
|
| 2009 |
Gauci S, Veenhoff LM, Heck AJ, Krijgsveld J. Orthogonal separation techniques for the characterization of the yeast nuclear proteome. Journal of Proteome Research. 8: 3451-63. PMID 19453177 DOI: 10.1021/Pr9000948 |
0.647 |
|
| 2009 |
Schaaij-Visser TB, Brakenhoff RH, Jansen JW, O'Flaherty MC, Smeets SJ, Heck AJ, Slijper M. Comparative proteome analysis to explore p53 pathway disruption in head and neck carcinogenesis. Journal of Proteomics. 72: 803-14. PMID 19446051 DOI: 10.1016/J.Jprot.2009.05.001 |
0.327 |
|
| 2009 |
Gauci S, Helbig AO, Slijper M, Krijgsveld J, Heck AJ, Mohammed S. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. Analytical Chemistry. 81: 4493-501. PMID 19413330 DOI: 10.1021/Ac9004309 |
0.603 |
|
| 2009 |
De Vries E, Bakker N, Krijgsveld J, Knox DP, Heck AJ, Yatsuda AP. An AC-5 cathepsin B-like protease purified from Haemonchus contortus excretory secretory products shows protective antigen potential for lambs. Veterinary Research. 40: 41. PMID 19401141 DOI: 10.1051/Vetres/2009025 |
0.582 |
|
| 2009 |
Dadvar P, O'Flaherty M, Scholten A, Rumpel K, Heck AJ. A chemical proteomics based enrichment technique targeting the interactome of the PDE5 inhibitor PF-4540124. Molecular Biosystems. 5: 472-82. PMID 19381362 DOI: 10.1039/B815709J |
0.364 |
|
| 2009 |
Pinkse MW, Rijkers DT, Dostmann WR, Heck AJ. Mode of action of cGMP-dependent protein kinase-specific inhibitors probed by photoaffinity cross-linking mass spectrometry. The Journal of Biological Chemistry. 284: 16354-68. PMID 19369251 DOI: 10.1074/Jbc.M808521200 |
0.364 |
|
| 2009 |
Gouw JW, Pinkse MW, Vos HR, Moshkin Y, Verrijzer CP, Heck AJ, Krijgsveld J. In vivo stable isotope labeling of fruit flies reveals post-transcriptional regulation in the maternal-to-zygotic transition. Molecular & Cellular Proteomics : McP. 8: 1566-78. PMID 19321433 DOI: 10.1074/Mcp.M900114-Mcp200 |
0.625 |
|
| 2009 |
Boersema PJ, Raijmakers R, Lemeer S, Mohammed S, Heck AJ. Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nature Protocols. 4: 484-94. PMID 19300442 DOI: 10.1038/Nprot.2009.21 |
0.36 |
|
| 2009 |
Altelaar AF, Mohammed S, Brans MA, Adan RA, Heck AJ. Improved identification of endogenous peptides from murine nervous tissue by multiplexed peptide extraction methods and multiplexed mass spectrometric analysis. Journal of Proteome Research. 8: 870-6. PMID 19152261 DOI: 10.1021/Pr800449N |
0.345 |
|
| 2009 |
van Duijn E, Barendregt A, Synowsky S, Versluis C, Heck AJ. Chaperonin complexes monitored by ion mobility mass spectrometry. Journal of the American Chemical Society. 131: 1452-9. PMID 19138114 DOI: 10.1021/Ja8055134 |
0.396 |
|
| 2009 |
Boersema PJ, Taouatas N, Altelaar AF, Gouw JW, Ross PL, Pappin DJ, Heck AJ, Mohammed S. Straightforward and de novo peptide sequencing by MALDI-MS/MS using a Lys-N metalloendopeptidase. Molecular & Cellular Proteomics : McP. 8: 650-60. PMID 19043101 DOI: 10.1074/Mcp.M800249-Mcp200 |
0.368 |
|
| 2009 |
Gauci S, van Breukelen B, Lemeer SM, Krijgsveld J, Heck AJ. A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing. Proteomics. 8: 4898-906. PMID 19003858 DOI: 10.1002/Pmic.200800295 |
0.567 |
|
| 2009 |
Boersema PJ, Aye TT, van Veen TA, Heck AJ, Mohammed S. Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates. Proteomics. 8: 4624-32. PMID 18850632 DOI: 10.1002/Pmic.200800297 |
0.384 |
|
| 2009 |
Dormeyer W, van Hoof D, Mummery CL, Krijgsveld J, Heck AJ. A practical guide for the identification of membrane and plasma membrane proteins in human embryonic stem cells and human embryonal carcinoma cells. Proteomics. 8: 4036-53. PMID 18763709 DOI: 10.1002/Pmic.200800143 |
0.578 |
|
| 2008 |
Van Hoof D, Heck AJ, Krijgsveld J, Mummery CL. Proteomics and human embryonic stem cells. Stem Cell Research. 1: 169-82. PMID 19383398 DOI: 10.1016/J.Scr.2008.05.003 |
0.639 |
|
| 2008 |
Aye TT, Mohammed S, van den Toorn HW, van Veen TA, van der Heyden MA, Scholten A, Heck AJ. Selectivity in enrichment of cAMP-dependent protein kinase regulatory subunits type I and type II and their interactors using modified cAMP affinity resins. Molecular & Cellular Proteomics : McP. 8: 1016-28. PMID 19119138 DOI: 10.1074/Mcp.M800226-Mcp200 |
0.388 |
|
| 2008 |
Synowsky SA, van Wijk M, Raijmakers R, Heck AJ. Comparative multiplexed mass spectrometric analyses of endogenously expressed yeast nuclear and cytoplasmic exosomes. Journal of Molecular Biology. 385: 1300-13. PMID 19046973 DOI: 10.1016/J.Jmb.2008.11.011 |
0.421 |
|
| 2008 |
Heck AJ. Native mass spectrometry: a bridge between interactomics and structural biology. Nature Methods. 5: 927-33. PMID 18974734 DOI: 10.1038/Nmeth.1265 |
0.369 |
|
| 2008 |
Geels RB, Calmat S, Heck AJ, van der Vies SM, Heeren RM. Thermal activation of the co-chaperonins GroES and gp31 probed by mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 22: 3633-41. PMID 18972453 DOI: 10.1002/Rcm.3782 |
0.337 |
|
| 2008 |
Taouatas N, Altelaar AF, Drugan MM, Helbig AO, Mohammed S, Heck AJ. Strong cation exchange-based fractionation of Lys-N-generated peptides facilitates the targeted analysis of post-translational modifications. Molecular & Cellular Proteomics : McP. 8: 190-200. PMID 18824475 DOI: 10.1074/Mcp.M800285-Mcp200 |
0.349 |
|
| 2008 |
Gouw JW, Tops BB, Mortensen P, Heck AJ, Krijgsveld J. Optimizing identification and quantitation of 15N-labeled proteins in comparative proteomics. Analytical Chemistry. 80: 7796-803. PMID 18808151 DOI: 10.1021/Ac801249V |
0.61 |
|
| 2008 |
van Werven FJ, van Bakel H, van Teeffelen HA, Altelaar AF, Koerkamp MG, Heck AJ, Holstege FC, Timmers HT. Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome. Genes & Development. 22: 2359-69. PMID 18703679 DOI: 10.1101/Gad.1682308 |
0.301 |
|
| 2008 |
Van Hoof D, Braam SR, Dormeyer W, Ward-van Oostwaard D, Heck AJ, Krijgsveld J, Mummery CL. Feeder-free monolayer cultures of human embryonic stem cells express an epithelial plasma membrane protein profile. Stem Cells (Dayton, Ohio). 26: 2777-81. PMID 18703662 DOI: 10.1634/Stemcells.2008-0365 |
0.578 |
|
| 2008 |
van Vlijmen T, Vleugel M, Evers M, Mohammed S, Wulf PS, Heck AJ, Hoogenraad CC, van der Sluijs P. A unique residue in rab3c determines the interaction with novel binding protein Zwint-1. Febs Letters. 582: 2838-42. PMID 18625232 DOI: 10.1016/J.Febslet.2008.07.012 |
0.345 |
|
| 2008 |
Lemeer S, Jopling C, Gouw J, Mohammed S, Heck AJ, Slijper M, den Hertog J. Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino knockdown embryos. Molecular & Cellular Proteomics : McP. 7: 2176-87. PMID 18550893 DOI: 10.1074/Mcp.M800081-Mcp200 |
0.344 |
|
| 2008 |
Raijmakers R, Berkers CR, de Jong A, Ovaa H, Heck AJ, Mohammed S. Automated online sequential isotope labeling for protein quantitation applied to proteasome tissue-specific diversity. Molecular & Cellular Proteomics : McP. 7: 1755-62. PMID 18534969 DOI: 10.1074/Mcp.M800093-Mcp200 |
0.388 |
|
| 2008 |
Visser NF, Heck AJ. Surface plasmon resonance mass spectrometry in proteomics. Expert Review of Proteomics. 5: 425-33. PMID 18532910 DOI: 10.1586/14789450.5.3.425 |
0.409 |
|
| 2008 |
Ringrose JH, van Solinge WW, Mohammed S, O'Flaherty MC, van Wijk R, Heck AJ, Slijper M. Highly efficient depletion strategy for the two most abundant erythrocyte soluble proteins improves proteome coverage dramatically. Journal of Proteome Research. 7: 3060-3. PMID 18494517 DOI: 10.1021/Pr8001029 |
0.363 |
|
| 2008 |
Sneekes EJ, Damen M, Swart R, Heck AJ. Isoform separation of a multi-acetylated protein using capillary polystyrene-divinylbenzene monolithic columns. Journal of Chromatography. A. 1194: 199-204. PMID 18486138 DOI: 10.1016/J.Chroma.2008.04.051 |
0.359 |
|
| 2008 |
Lorenzen K, Olia AS, Uetrecht C, Cingolani G, Heck AJ. Determination of stoichiometry and conformational changes in the first step of the P22 tail assembly. Journal of Molecular Biology. 379: 385-96. PMID 18448123 DOI: 10.1016/J.Jmb.2008.02.017 |
0.34 |
|
| 2008 |
Taouatas N, Drugan MM, Heck AJ, Mohammed S. Straightforward ladder sequencing of peptides using a Lys-N metalloendopeptidase. Nature Methods. 5: 405-7. PMID 18425140 DOI: 10.1038/Nmeth.1204 |
0.342 |
|
| 2008 |
Mohammed S, Lorenzen K, Kerkhoven R, van Breukelen B, Vannini A, Cramer P, Heck AJ. Multiplexed proteomics mapping of yeast RNA polymerase II and III allows near-complete sequence coverage and reveals several novel phosphorylation sites. Analytical Chemistry. 80: 3584-92. PMID 18416563 DOI: 10.1021/Ac7024283 |
0.322 |
|
| 2008 |
Whetton AD, Williamson AJ, Krijgsveld J, Lee BH, Lemischka I, Oh S, Pera M, Mummery C, Heck AJ. The time is right: proteome biology of stem cells. Cell Stem Cell. 2: 215-7. PMID 18383624 DOI: 10.1016/J.Stem.2008.02.003 |
0.578 |
|
| 2008 |
Scholten A, Aye TT, Heck AJ. A multi-angular mass spectrometric view at cyclic nucleotide dependent protein kinases: in vivo characterization and structure/function relationships. Mass Spectrometry Reviews. 27: 331-53. PMID 18381623 DOI: 10.1002/Mas.20166 |
0.405 |
|
| 2008 |
Mohammed S, Kraiczek K, Pinkse MW, Lemeer S, Benschop JJ, Heck AJ. Chip-Based Enrichment and NanoLC-MS/MS Analysis of Phosphopeptides from Whole Lysates. Journal of Proteome Research. 7: 1565-71. PMID 18307298 DOI: 10.1021/Pr700635A |
0.391 |
|
| 2008 |
Lemeer S, Pinkse MW, Mohammed S, van Breukelen B, den Hertog J, Slijper M, Heck AJ. Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo. Journal of Proteome Research. 7: 1555-64. PMID 18307296 DOI: 10.1021/Pr700667W |
0.353 |
|
| 2008 |
Boersema PJ, Mohammed S, Heck AJ. Hydrophilic interaction liquid chromatography (HILIC) in proteomics. Analytical and Bioanalytical Chemistry. 391: 151-9. PMID 18264818 DOI: 10.1007/S00216-008-1865-7 |
0.361 |
|
| 2008 |
Krijgsveld J, Whetton AD, Lee B, Lemischka I, Oh S, Pera M, Mummery C, Heck AJ. Proteome biology of stem cells: a new joint HUPO and ISSCR initiative. Molecular & Cellular Proteomics : McP. 7: 204-5. PMID 18178583 DOI: 10.1074/Mcp.H800001-Mcp200 |
0.574 |
|
| 2008 |
Mousson F, Kolkman A, Pijnappel WW, Timmers HT, Heck AJ. Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes. Molecular & Cellular Proteomics : McP. 7: 845-52. PMID 18087068 DOI: 10.1074/Mcp.M700306-Mcp200 |
0.399 |
|
| 2008 |
Kitagawa N, Mazon H, Heck AJ, Wilkens S. Stoichiometry of the peripheral stalk subunits E and G of yeast V1-ATPase determined by mass spectrometry. The Journal of Biological Chemistry. 283: 3329-37. PMID 18055462 DOI: 10.1074/Jbc.M707924200 |
0.353 |
|
| 2008 |
Pinkse MW, Mohammed S, Gouw JW, van Breukelen B, Vos HR, Heck AJ. Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster. Journal of Proteome Research. 7: 687-97. PMID 18034456 DOI: 10.1021/Pr700605Z |
0.348 |
|
| 2008 |
Visser NF, Scholten A, van den Heuvel RH, Heck AJ. Surface-plasmon-resonance-based chemical proteomics: efficient specific extraction and semiquantitative identification of cyclic nucleotide-binding proteins from cellular lysates by using a combination of surface plasmon resonance, sequential elution and liquid chromatography-tandem mass spectrometry. Chembiochem : a European Journal of Chemical Biology. 8: 298-305. PMID 17206730 DOI: 10.1002/Cbic.200600449 |
0.408 |
|
| 2008 |
Toorn HWvd, Mohammed S, Gouw JW, Breukelen Bv, Heck AJ. Targeted SCX Based Peptide Fractionation for Optimal Sequencing by Collision Induced, and Electron Transfer Dissociation Journal of Proteomics & Bioinformatics. 1: 379-388. DOI: 10.4172/Jpb.1000047 |
0.345 |
|
| 2007 |
Heck AJ, Mummery C, Whetton A, Oh S, Lee B, Pera M, Lemischka I, Krijgsveld J. Proteome biology of stem cells. Stem Cell Research. 1: 7-8. PMID 19383382 DOI: 10.1016/J.Scr.2007.08.001 |
0.558 |
|
| 2007 |
Alverdi V, Mazon H, Versluis C, Hemrika W, Esposito G, van den Heuvel R, Scholten A, Heck AJ. cGMP-binding prepares PKG for substrate binding by disclosing the C-terminal domain. Journal of Molecular Biology. 375: 1380-93. PMID 18082764 DOI: 10.1016/J.Jmb.2007.11.053 |
0.339 |
|
| 2007 |
Synowsky SA, Heck AJ. The yeast Ski complex is a hetero-tetramer. Protein Science : a Publication of the Protein Society. 17: 119-25. PMID 18042677 DOI: 10.1110/Ps.073155908 |
0.322 |
|
| 2007 |
Dormeyer W, Mohammed S, Breukelen Bv, Krijgsveld J, Heck AJ. Targeted analysis of protein termini. Journal of Proteome Research. 6: 4634-45. PMID 17927228 DOI: 10.1021/Pr070375K |
0.629 |
|
| 2007 |
Van Hoof D, Pinkse MW, Oostwaard DW, Mummery CL, Heck AJ, Krijgsveld J. An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics. Nature Methods. 4: 677-8. PMID 17762871 DOI: 10.1038/Nmeth0907-677 |
0.558 |
|
| 2007 |
Lemeer S, Ruijtenbeek R, Pinkse MW, Jopling C, Heck AJ, den Hertog J, Slijper M. Endogenous phosphotyrosine signaling in zebrafish embryos. Molecular & Cellular Proteomics : McP. 6: 2088-99. PMID 17698882 DOI: 10.1074/Mcp.M600482-Mcp200 |
0.354 |
|
| 2007 |
Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, et al. The minimum information about a proteomics experiment (MIAPE). Nature Biotechnology. 25: 887-93. PMID 17687369 DOI: 10.1038/Nbt1329 |
0.348 |
|
| 2007 |
Lemeer S, Jopling C, Naji F, Ruijtenbeek R, Slijper M, Heck AJ, den Hertog J. Protein-tyrosine kinase activity profiling in knock down zebrafish embryos. Plos One. 2: e581. PMID 17611617 DOI: 10.1371/Journal.Pone.0000581 |
0.354 |
|
| 2007 |
Brunner E, Ahrens CH, Mohanty S, Baetschmann H, Loevenich S, Potthast F, Deutsch EW, Panse C, de Lichtenberg U, Rinner O, Lee H, Pedrioli PG, Malmstrom J, Koehler K, Schrimpf S, ... ... Heck AJ, et al. A high-quality catalog of the Drosophila melanogaster proteome. Nature Biotechnology. 25: 576-83. PMID 17450130 DOI: 10.1038/Nbt1300 |
0.611 |
|
| 2007 |
Scholten A, van Veen TA, Vos MA, Heck AJ. Diversity of cAMP-dependent protein kinase isoforms and their anchoring proteins in mouse ventricular tissue. Journal of Proteome Research. 6: 1705-17. PMID 17432891 DOI: 10.1021/Pr060601A |
0.375 |
|
| 2007 |
Stanley WA, Versluis K, Schultz C, Heck AJ, Wilmanns M. Investigation of the ligand spectrum of human sterol carrier protein 2 using a direct mass spectrometry assay. Archives of Biochemistry and Biophysics. 461: 50-8. PMID 17418802 DOI: 10.1016/J.Abb.2007.02.026 |
0.351 |
|
| 2007 |
Scholten A, Fuss H, Heck AJ, Dostmann WR. The hinge region operates as a stability switch in cGMP-dependent protein kinase I alpha. The Febs Journal. 274: 2274-86. PMID 17403045 DOI: 10.1111/J.1742-4658.2007.05764.X |
0.347 |
|
| 2007 |
Monti MC, Hernández-Arriaga AM, Kamphuis MB, López-Villarejo J, Heck AJ, Boelens R, DÃaz-Orejas R, van den Heuvel RH. Interactions of Kid-Kis toxin-antitoxin complexes with the parD operator-promoter region of plasmid R1 are piloted by the Kis antitoxin and tuned by the stoichiometry of Kid-Kis oligomers. Nucleic Acids Research. 35: 1737-49. PMID 17317682 DOI: 10.1093/Nar/Gkm073 |
0.31 |
|
| 2007 |
Benschop JJ, Mohammed S, O'Flaherty M, Heck AJ, Slijper M, Menke FL. Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. Molecular & Cellular Proteomics : McP. 6: 1198-214. PMID 17317660 DOI: 10.1074/Mcp.M600429-Mcp200 |
0.379 |
|
| 2007 |
Mazon H, Gábor K, Leys D, Heck AJ, van der Oost J, van den Heuvel RH. Transcriptional activation by CprK1 is regulated by protein structural changes induced by effector binding and redox state. The Journal of Biological Chemistry. 282: 11281-90. PMID 17303561 DOI: 10.1074/Jbc.M611177200 |
0.34 |
|
| 2007 |
Mihalca R, van der Burgt YE, Heck AJ, Heeren RM. Disulfide bond cleavages observed in SORI-CID of three nonapeptides complexed with divalent transition-metal cations. Journal of Mass Spectrometry : Jms. 42: 450-8. PMID 17295413 DOI: 10.1002/Jms.1175 |
0.347 |
|
| 2007 |
Boersema PJ, Divecha N, Heck AJ, Mohammed S. Evaluation and optimization of ZIC-HILIC-RP as an alternative MudPIT strategy. Journal of Proteome Research. 6: 937-46. PMID 17256977 DOI: 10.1021/Pr060589M |
0.36 |
|
| 2007 |
Kamphuis MB, Monti MC, van den Heuvel RH, Santos-Sierra S, Folkers GE, Lemonnier M, DÃaz-Orejas R, Heck AJ, Boelens R. Interactions between the toxin Kid of the bacterial parD system and the antitoxins Kis and MazE. Proteins. 67: 219-31. PMID 17206710 DOI: 10.1002/Prot.21254 |
0.367 |
|
| 2007 |
van den Heuvel RH, van Duijn E, Mazon H, Synowsky SA, Lorenzen K, Versluis C, Brouns SJ, Langridge D, van der Oost J, Hoyes J, Heck AJ. Improving the performance of a quadrupole time-of-flight instrument for macromolecular mass spectrometry. Analytical Chemistry. 78: 7473-83. PMID 17073415 DOI: 10.1021/Ac061039A |
0.39 |
|
| 2007 |
Poliakov A, van Duijn E, Lander G, Fu CY, Johnson JE, Prevelige PE, Heck AJ. Macromolecular mass spectrometry and electron microscopy as complementary tools for investigation of the heterogeneity of bacteriophage portal assemblies. Journal of Structural Biology. 157: 371-83. PMID 17064935 DOI: 10.1016/J.Jsb.2006.09.003 |
0.324 |
|
| 2007 |
Wijte D, de Jong AL, Mol MA, van Baar BL, Heck AJ. ProteomIQ blue, a potent post-stain for the visualization and subsequent mass spectrometry based identification of fluorescent stained proteins on 2D-gels. Journal of Proteome Research. 5: 2033-8. PMID 16889427 DOI: 10.1021/Pr060076F |
0.383 |
|
| 2007 |
van Breukelen B, Barendregt A, Heck AJ, van den Heuvel RH. Resolving stoichiometries and oligomeric states of glutamate synthase protein complexes with curve fitting and simulation of electrospray mass spectra. Rapid Communications in Mass Spectrometry : Rcm. 20: 2490-6. PMID 16862623 DOI: 10.1002/Rcm.2620 |
0.35 |
|
| 2007 |
Lorenzen K, Versluis C, van Duijn E, van den Heuvel RH, Heck AJ. Optimizing macromolecular tandem mass spectrometry of large non-covalent complexes using heavy collision gases International Journal of Mass Spectrometry. 268: 198-206. DOI: 10.1016/J.Ijms.2007.06.012 |
0.351 |
|
| 2007 |
Geels RB, van der Vies SM, Heck AJ, Heeren RM. Comparative gas-phase activation of two similar non-covalent heptameric protein complexes: gp31 and GroES International Journal of Mass Spectrometry. 265: 159-168. DOI: 10.1016/J.Ijms.2007.02.008 |
0.351 |
|
| 2006 |
Dirksen EH, Pinkse MW, Rijkers DT, Cloos J, Liskamp RM, Slijper M, Heck AJ. Investigating the dynamic nature of the interactions between nuclear proteins and histones upon DNA damage using an immobilized peptide chemical proteomics approach. Journal of Proteome Research. 5: 2380-8. PMID 16944950 DOI: 10.1021/Pr060278B |
0.363 |
|
| 2006 |
Van Hoof D, Mummery CL, Heck AJ, Krijgsveld J. Embryonic stem cell proteomics. Expert Review of Proteomics. 3: 427-37. PMID 16901201 DOI: 10.1586/14789450.3.4.427 |
0.597 |
|
| 2006 |
Synowsky SA, van den Heuvel RH, Mohammed S, Pijnappel PW, Heck AJ. Probing genuine strong interactions and post-translational modifications in the heterogeneous yeast exosome protein complex. Molecular & Cellular Proteomics : McP. 5: 1581-92. PMID 16829593 DOI: 10.1074/Mcp.M600043-Mcp200 |
0.438 |
|
| 2006 |
Krijgsveld J, Gauci S, Dormeyer W, Heck AJ. In-gel isoelectric focusing of peptides as a tool for improved protein identification. Journal of Proteome Research. 5: 1721-30. PMID 16823980 DOI: 10.1021/Pr0601180 |
0.634 |
|
| 2006 |
Scholten A, Poh MK, van Veen TA, van Breukelen B, Vos MA, Heck AJ. Analysis of the cGMP/cAMP interactome using a chemical proteomics approach in mammalian heart tissue validates sphingosine kinase type 1-interacting protein as a genuine and highly abundant AKAP. Journal of Proteome Research. 5: 1435-47. PMID 16739995 DOI: 10.1021/Pr0600529 |
0.397 |
|
| 2006 |
Kolkman A, Daran-Lapujade P, Fullaondo A, Olsthoorn MM, Pronk JT, Slijper M, Heck AJ. Proteome analysis of yeast response to various nutrient limitations. Molecular Systems Biology. 2: 2006.0026. PMID 16738570 DOI: 10.1038/Msb4100069 |
0.338 |
|
| 2006 |
Eman MR, Regan-Klapisz E, Pinkse MW, Koop IM, Haverkamp J, Heck AJ, Verkleij AJ, Post JA. Protein expression dynamics during replicative senescence of endothelial cells studied by 2-D difference in-gel electrophoresis. Electrophoresis. 27: 1669-82. PMID 16609940 DOI: 10.1002/Elps.200500746 |
0.354 |
|
| 2006 |
Van Hoof D, Passier R, Ward-Van Oostwaard D, Pinkse MW, Heck AJ, Mummery CL, Krijgsveld J. A quest for human and mouse embryonic stem cell-specific proteins. Molecular & Cellular Proteomics : McP. 5: 1261-73. PMID 16600995 DOI: 10.1074/Mcp.M500405-Mcp200 |
0.623 |
|
| 2006 |
van Duijn E, Simmons DA, van den Heuvel RH, Bakkes PJ, van Heerikhuizen H, Heeren RM, Robinson CV, van der Vies SM, Heck AJ. Tandem mass spectrometry of intact GroEL-substrate complexes reveals substrate-specific conformational changes in the trans ring. Journal of the American Chemical Society. 128: 4694-702. PMID 16594706 DOI: 10.1021/Ja056756L |
0.346 |
|
| 2006 |
Yatsuda AP, Bakker N, Krijgsveld J, Knox DP, Heck AJ, de Vries E. Identification of secreted cysteine proteases from the parasitic nematode Haemonchus contortus detected by biotinylated inhibitors. Infection and Immunity. 74: 1989-93. PMID 16495580 DOI: 10.1128/Iai.74.3.1989-1993.2006 |
0.586 |
|
| 2006 |
Meiring HD, Soethout EC, Poelen MC, Mooibroek D, Hoogerbrugge R, Timmermans H, Boog CJ, Heck AJ, de Jong AP, van Els CA. Stable isotope tagging of epitopes: a highly selective strategy for the identification of major histocompatibility complex class I-associated peptides induced upon viral infection. Molecular & Cellular Proteomics : McP. 5: 902-13. PMID 16432254 DOI: 10.1074/Mcp.T500014-Mcp200 |
0.323 |
|
| 2006 |
de Mol NJ, Catalina MI, Dekker FJ, Fischer MJ, Heck AJ, Liskamp RM. Protein flexibility and ligand rigidity: a thermodynamic and kinetic study of ITAM-based ligand binding to Syk tandem SH2. Chembiochem : a European Journal of Chemical Biology. 6: 2261-70. PMID 16252296 DOI: 10.1002/Cbic.200500141 |
0.316 |
|
| 2006 |
Heck AJ, Krijgsveld J. Mass spectrometry-based quantitative proteomics. Expert Review of Proteomics. 1: 317-26. PMID 15966828 DOI: 10.1586/14789450.1.3.317 |
0.635 |
|
| 2006 |
Catalina MI, van den Heuvel RH, van Duijn E, Heck AJ. Decharging of globular proteins and protein complexes in electrospray. Chemistry (Weinheim An Der Bergstrasse, Germany). 11: 960-8. PMID 15593239 DOI: 10.1002/Chem.200400395 |
0.393 |
|
| 2005 |
Siebert HC, Born K, André S, Frank M, Kaltner H, von der Lieth CW, Heck AJ, Jiménez-Barbero J, Kopitz J, Gabius HJ. Carbohydrate chain of ganglioside GM1 as a ligand: identification of the binding strategies of three 15 mer peptides and their divergence from the binding modes of growth-regulatory galectin-1 and cholera toxin. Chemistry (Weinheim An Der Bergstrasse, Germany). 12: 388-402. PMID 16267866 DOI: 10.1002/Chem.200500505 |
0.345 |
|
| 2005 |
van der Veken P, Dirksen EH, Ruijter E, Elgersma RC, Heck AJ, Rijkers DT, Slijper M, Liskamp RM. Development of a novel chemical probe for the selective enrichment of phosphorylated serine- and threonine-containing peptides. Chembiochem : a European Journal of Chemical Biology. 6: 2271-80. PMID 16254931 DOI: 10.1002/Cbic.200500209 |
0.391 |
|
| 2005 |
Kruithof CA, Casado MA, Guillena G, Egmond MR, van der Kerk-van Hoof A, Heck AJ, Klein Gebbink RJ, van Koten G. Lipase active-site-directed anchoring of organometallics: metallopincer/protein hybrids. Chemistry (Weinheim An Der Bergstrasse, Germany). 11: 6869-77. PMID 16224766 DOI: 10.1002/Chem.200500671 |
0.32 |
|
| 2005 |
Kolkman A, Slijper M, Heck AJ. Development and application of proteomics technologies in Saccharomyces cerevisiae. Trends in Biotechnology. 23: 598-604. PMID 16202464 DOI: 10.1016/J.Tibtech.2005.09.004 |
0.399 |
|
| 2005 |
van den Heuvel RH, Tahallah N, Kamerbeek NM, Fraaije MW, van Berkel WJ, Janssen DB, Heck AJ. Coenzyme binding during catalysis is beneficial for the stability of 4-hydroxyacetophenone monooxygenase. The Journal of Biological Chemistry. 280: 32115-21. PMID 16049018 DOI: 10.1074/Jbc.M503758200 |
0.303 |
|
| 2005 |
Romijn EP, Christis C, Wieffer M, Gouw JW, Fullaondo A, van der Sluijs P, Braakman I, Heck AJ. Expression clustering reveals detailed co-expression patterns of functionally related proteins during B cell differentiation: a proteomic study using a combination of one-dimensional gel electrophoresis, LC-MS/MS, and stable isotope labeling by amino acids in cell culture (SILAC). Molecular & Cellular Proteomics : McP. 4: 1297-310. PMID 15961381 DOI: 10.1074/Mcp.M500123-Mcp200 |
0.389 |
|
| 2005 |
van den Heuvel RH, Gato S, Versluis C, Gerbaux P, Kleanthous C, Heck AJ. Real-time monitoring of enzymatic DNA hydrolysis by electrospray ionization mass spectrometry. Nucleic Acids Research. 33: e96. PMID 15956101 DOI: 10.1093/Nar/Gni099 |
0.331 |
|
| 2005 |
van Balkom BW, van Gestel RA, Brouwers JF, Krijgsveld J, Tielens AG, Heck AJ, van Hellemond JJ. Mass spectrometric analysis of the Schistosoma mansoni tegumental sub-proteome. Journal of Proteome Research. 4: 958-66. PMID 15952743 DOI: 10.1021/pr050036w |
0.571 |
|
| 2005 |
Rodriguez P, Bonte E, Krijgsveld J, Kolodziej KE, Guyot B, Heck AJ, Vyas P, de Boer E, Grosveld F, Strouboulis J. GATA-1 forms distinct activating and repressive complexes in erythroid cells. The Embo Journal. 24: 2354-66. PMID 15920471 DOI: 10.1038/Sj.Emboj.7600702 |
0.577 |
|
| 2005 |
Catalina MI, Fischer MJ, Dekker FJ, Liskamp RM, Heck AJ. Binding of a diphosphorylated-ITAM peptide to spleen tyrosine kinase (Syk) induces distal conformational changes: a hydrogen exchange mass spectrometry study. Journal of the American Society For Mass Spectrometry. 16: 1039-51. PMID 15914019 DOI: 10.1016/J.Jasms.2005.02.011 |
0.404 |
|
| 2005 |
Brandon EF, van Ooijen RD, Sparidans RW, Lázaro LL, Heck AJ, Beijnen JH, Schellens JH. Structure elucidation of aplidine metabolites formed in vitro by human liver microsomes using triple quadrupole mass spectrometry. Journal of Mass Spectrometry : Jms. 40: 821-31. PMID 15892174 DOI: 10.1002/Jms.863 |
0.314 |
|
| 2005 |
van Duijn E, Bakkes PJ, Heeren RM, van den Heuvel RH, van Heerikhuizen H, van der Vies SM, Heck AJ. Monitoring macromolecular complexes involved in the chaperonin-assisted protein folding cycle by mass spectrometry. Nature Methods. 2: 371-6. PMID 15846365 DOI: 10.1038/Nmeth753 |
0.403 |
|
| 2005 |
van der Knaap JA, Kumar BR, Moshkin YM, Langenberg K, Krijgsveld J, Heck AJ, Karch F, Verrijzer CP. GMP synthetase stimulates histone H2B deubiquitylation by the epigenetic silencer USP7. Molecular Cell. 17: 695-707. PMID 15749019 DOI: 10.1016/J.Molcel.2005.02.013 |
0.553 |
|
| 2005 |
Kolkman A, Dirksen EH, Slijper M, Heck AJ. Double standards in quantitative proteomics: direct comparative assessment of difference in gel electrophoresis and metabolic stable isotope labeling. Molecular & Cellular Proteomics : McP. 4: 255-66. PMID 15632418 DOI: 10.1074/Mcp.M400121-Mcp200 |
0.387 |
|
| 2005 |
Neeft M, Wieffer M, de Jong AS, Negroiu G, Metz CH, van Loon A, Griffith J, Krijgsveld J, Wulffraat N, Koch H, Heck AJ, Brose N, Kleijmeer M, van der Sluijs P. Munc13-4 is an effector of rab27a and controls secretion of lysosomes in hematopoietic cells. Molecular Biology of the Cell. 16: 731-41. PMID 15548590 DOI: 10.1091/Mbc.E04-10-0923 |
0.568 |
|
| 2005 |
André S, Kaltner H, Lensch M, Russwurm R, Siebert HC, Fallsehr C, Tajkhorshid E, Heck AJ, von Knebel Doeberitz M, Gabius HJ, Kopitz J. Determination of structural and functional overlap/divergence of five proto-type galectins by analysis of the growth-regulatory interaction with ganglioside GM1 in silico and in vitro on human neuroblastoma cells. International Journal of Cancer. Journal International Du Cancer. 114: 46-57. PMID 15523676 DOI: 10.1002/Ijc.20699 |
0.312 |
|
| 2005 |
van den Heuvel RH, Heck AJ. Native protein mass spectrometry: from intact oligomers to functional machineries. Current Opinion in Chemical Biology. 8: 519-26. PMID 15450495 DOI: 10.1016/J.Cbpa.2004.08.006 |
0.419 |
|
| 2005 |
Pinkse MW, Uitto PM, Hilhorst MJ, Ooms B, Heck AJ. Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESI-MS/MS and titanium oxide precolumns. Analytical Chemistry. 76: 3935-43. PMID 15253627 DOI: 10.1021/Ac0498617 |
0.37 |
|
| 2004 |
Kolkman A, Olsthoorn MM, Heeremans CE, Heck AJ, Slijper M. Comparative proteome analysis of Saccharomyces cerevisiae grown in chemostat cultures limited for glucose or ethanol. Molecular & Cellular Proteomics : McP. 4: 1-11. PMID 15502163 DOI: 10.1074/Mcp.M400087-Mcp200 |
0.312 |
|
| 2004 |
Avram D, Romijn EP, Pap EH, Heck AJ, Wirtz KW. Identification of proteins in activated human neutrophils susceptible to tyrosyl radical attack. A proteomic study using a tyrosylating fluorophore. Proteomics. 4: 2397-407. PMID 15274135 DOI: 10.1002/Pmic.200300755 |
0.361 |
|
| 2004 |
Heck AJ, Van Den Heuvel RH. Investigation of intact protein complexes by mass spectrometry. Mass Spectrometry Reviews. 23: 368-89. PMID 15264235 DOI: 10.1002/Mas.10081 |
0.418 |
|
| 2004 |
de Mol NJ, Catalina MI, Fischer MJ, Broutin I, Maier CS, Heck AJ. Changes in structural dynamics of the Grb2 adaptor protein upon binding of phosphotyrosine ligand to its SH2 domain. Biochimica Et Biophysica Acta. 1700: 53-64. PMID 15210125 DOI: 10.1016/J.Bbapap.2004.03.016 |
0.363 |
|
| 2004 |
Bosch BJ, Martina BE, Van Der Zee R, Lepault J, Haijema BJ, Versluis C, Heck AJ, De Groot R, Osterhaus AD, Rottier PJ. Severe acute respiratory syndrome coronavirus (SARS-CoV) infection inhibition using spike protein heptad repeat-derived peptides. Proceedings of the National Academy of Sciences of the United States of America. 101: 8455-60. PMID 15150417 DOI: 10.1073/Pnas.0400576101 |
0.314 |
|
| 2004 |
van den Bremer ET, Keeble AH, Jiskoot W, Spelbrink RE, Maier CS, van Hoek A, Visser AJ, James R, Moore GR, Kleanthous C, Heck AJ. Distinct conformational stability and functional activity of four highly homologous endonuclease colicins. Protein Science : a Publication of the Protein Society. 13: 1391-401. PMID 15096639 DOI: 10.1110/Ps.03508204 |
0.325 |
|
| 2004 |
Ridder AN, Spelbrink RE, Demmers JA, Rijkers DT, Liskamp RM, Brunner J, Heck AJ, de Kruijff B, Killian JA. Photo-crosslinking analysis of preferential interactions between a transmembrane peptide and matching lipids. Biochemistry. 43: 4482-9. PMID 15078094 DOI: 10.1021/Bi049899D |
0.302 |
|
| 2004 |
Mohrmann L, Langenberg K, Krijgsveld J, Kal AJ, Heck AJ, Verrijzer CP. Differential targeting of two distinct SWI/SNF-related Drosophila chromatin-remodeling complexes. Molecular and Cellular Biology. 24: 3077-88. PMID 15060132 DOI: 10.1128/Mcb.24.8.3077-3088.2004 |
0.59 |
|
| 2004 |
Stokvis E, Rosing H, Crul M, Rieser MJ, Heck AJ, Schellens JH, Beijnen JH. Quantitative analysis of the novel anticancer drug ABT-518, a matrix metalloproteinase inhibitor, plus the screening of six metabolites in human plasma using high-performance liquid chromatography coupled with electrospray tandem mass spectrometry. Journal of Mass Spectrometry : Jms. 39: 277-88. PMID 15039935 DOI: 10.1002/Jms.579 |
0.302 |
|
| 2004 |
van den Heuvel RH, Westphal AH, Heck AJ, Walsh MA, Rovida S, van Berkel WJ, Mattevi A. Structural studies on flavin reductase PheA2 reveal binding of NAD in an unusual folded conformation and support novel mechanism of action. The Journal of Biological Chemistry. 279: 12860-7. PMID 14703520 DOI: 10.1074/Jbc.M313765200 |
0.305 |
|
| 2004 |
Houtman R, Krijgsveld J, Kool M, Romijn EP, Redegeld FA, Nijkamp FP, Heck AJ, Humphery-Smith I. Lung proteome alterations in a mouse model for nonallergic asthma. Proteomics. 3: 2008-18. PMID 14625863 DOI: 10.1002/Pmic.200300469 |
0.58 |
|
| 2004 |
Heck AJ, Jørgensen TJ. Vancomycin in vacuo International Journal of Mass Spectrometry. 236: 11-23. DOI: 10.1016/J.Ijms.2004.05.006 |
0.343 |
|
| 2003 |
Kleinnijenhuis AJ, Duursma MC, Breukink E, Heeren RM, Heck AJ. Localization of intramolecular monosulfide bridges in lantibiotics determined with electron capture induced dissociation. Analytical Chemistry. 75: 3219-25. PMID 12964772 DOI: 10.1021/Ac0263770 |
0.307 |
|
| 2003 |
Romijn EP, Krijgsveld J, Heck AJ. Recent liquid chromatographic-(tandem) mass spectrometric applications in proteomics. Journal of Chromatography. A. 1000: 589-608. PMID 12877191 DOI: 10.1016/S0021-9673(03)00178-X |
0.614 |
|
| 2003 |
Krijgsveld J, Ketting RF, Mahmoudi T, Johansen J, Artal-Sanz M, Verrijzer CP, Plasterk RH, Heck AJ. Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics. Nature Biotechnology. 21: 927-31. PMID 12858183 DOI: 10.1038/Nbt848 |
0.619 |
|
| 2003 |
de Boer E, Rodriguez P, Bonte E, Krijgsveld J, Katsantoni E, Heck A, Grosveld F, Strouboulis J. Efficient biotinylation and single-step purification of tagged transcription factors in mammalian cells and transgenic mice. Proceedings of the National Academy of Sciences of the United States of America. 100: 7480-5. PMID 12802011 DOI: 10.1073/Pnas.1332608100 |
0.619 |
|
| 2003 |
van Anken E, Romijn EP, Maggioni C, Mezghrani A, Sitia R, Braakman I, Heck AJ. Sequential waves of functionally related proteins are expressed when B cells prepare for antibody secretion. Immunity. 18: 243-53. PMID 12594951 DOI: 10.1016/S1074-7613(03)00024-4 |
0.324 |
|
| 2003 |
Yatsuda AP, Krijgsveld J, Cornelissen AW, Heck AJ, de Vries E. Comprehensive analysis of the secreted proteins of the parasite Haemonchus contortus reveals extensive sequence variation and differential immune recognition. The Journal of Biological Chemistry. 278: 16941-51. PMID 12576473 DOI: 10.1074/Jbc.M212453200 |
0.623 |
|
| 2002 |
Demmers JA, Rijkers DT, Haverkamp J, Killian JA, Heck AJ. Factors affecting gas-phase deuterium scrambling in peptide ions and their implications for protein structure determination. Journal of the American Chemical Society. 124: 11191-8. PMID 12224967 DOI: 10.1021/Ja0125927 |
0.372 |
|
| 2002 |
Jerić I, Versluis C, Horvat S, Heck AJ. Tracing glycoprotein structures: electrospray ionization tandem mass spectrometric analysis of sugar-peptide adducts. Journal of Mass Spectrometry : Jms. 37: 803-11. PMID 12203674 DOI: 10.1002/Jms.337 |
0.341 |
|
| 2002 |
Bossi RT, Aliverti A, Raimondi D, Fischer F, Zanetti G, Ferrari D, Tahallah N, Maier CS, Heck AJ, Rizzi M, Mattevi A. A covalent modification of NADP+ revealed by the atomic resolution structure of FprA, a Mycobacterium tuberculosis oxidoreductase. Biochemistry. 41: 8807-18. PMID 12102623 DOI: 10.1021/Bi025858A |
0.306 |
|
| 2002 |
van den Bremer ET, Jiskoot W, James R, Moore GR, Kleanthous C, Heck AJ, Maier CS. Probing metal ion binding and conformational properties of the colicin E9 endonuclease by electrospray ionization time-of-flight mass spectrometry. Protein Science : a Publication of the Protein Society. 11: 1738-52. PMID 12070327 DOI: 10.1110/Ps.0200502 |
0.321 |
|
| 2002 |
Vollmerhaus PJ, Tempels FW, Kettenes-van den Bosch JJ, Heck AJ. Molecular interactions of glycopeptide antibiotics investigated by affinity capillary electrophoresis and bioaffinity electrospray ionization-mass spectrometry. Electrophoresis. 23: 868-79. PMID 11920871 DOI: 10.1002/1522-2683(200203)23:6<868::Aid-Elps868>3.0.Co;2-# |
0.352 |
|
| 2002 |
Ruijtenbeek R, Versluis C, Heck AJ, Redegeld FA, Nijkamp FP, Liskamp RM. Characterization of a phosphorylated peptide and peptoid and peptoid-peptide hybrids by mass spectrometry. Journal of Mass Spectrometry : Jms. 37: 47-55. PMID 11813310 DOI: 10.1002/Jms.245 |
0.355 |
|
| 2002 |
Waterval JC, Bestebreurtje P, Lingeman H, Versluis C, Heck AJ, Bult A, Underberg WJ. Robust and cost-effective capillary electrophoresis-mass spectrometry interfaces suitable for combination with on-line analyte preconcentration. Electrophoresis. 22: 2701-8. PMID 11545395 DOI: 10.1002/1522-2683(200108)22:13<2701::Aid-Elps2701>3.0.Co;2-3 |
0.309 |
|
| 2001 |
Demmers JA, van Duijn E, Haverkamp J, Greathouse DV, Koeppe RE, Heck AJ, Killian JA. Interfacial positioning and stability of transmembrane peptides in lipid bilayers studied by combining hydrogen/deuterium exchange and mass spectrometry. The Journal of Biological Chemistry. 276: 34501-8. PMID 11435420 DOI: 10.1074/Jbc.M101401200 |
0.338 |
|
| 2001 |
Roscić M, Versluis C, Kleinnijenhuis AJ, Horvat S, Heck AJ. The early glycation products of the Maillard reaction: mass spectrometric characterization of novel imidazolidinones derived from an opioid pentapeptide and glucose. Rapid Communications in Mass Spectrometry : Rcm. 15: 1022-9. PMID 11400213 DOI: 10.1002/Rcm.334 |
0.332 |
|
| 2001 |
Tahallah N, Pinkse M, Maier CS, Heck AJ. The effect of the source pressure on the abundance of ions of noncovalent protein assemblies in an electrospray ionization orthogonal time-of-flight instrument. Rapid Communications in Mass Spectrometry : Rcm. 15: 596-601. PMID 11312509 DOI: 10.1002/Rcm.275 |
0.307 |
|
| 2001 |
Heck AJ, Bonnici PJ, Breukink E, Morris D, Wills M. Modification and inhibition of vancomycin group antibiotics by formaldehyde and acetaldehyde. Chemistry (Weinheim An Der Bergstrasse, Germany). 7: 910-6. PMID 11288883 DOI: 10.1002/1521-3765(20010216)7:4<910::Aid-Chem910>3.0.Co;2-U |
0.301 |
|
| 2001 |
Versluis C, van der Staaij A, Stokvis E, Heck AJ, de Craene B. Metastable ion formation and disparate charge separation in the gas-phase dissection of protein assemblies studied by orthogonal time-of-flight mass spectrometry. Journal of the American Society For Mass Spectrometry. 12: 329-36. PMID 11281608 DOI: 10.1016/S1044-0305(00)00227-0 |
0.349 |
|
| 2000 |
Stokvis E, Clugston SL, Honek JF, Heck AJ. Characterization of glyoxalase I (E. coli)-inhibitor interactions by electrospray time-of-flight mass spectrometry and enzyme kinetic analysis. Journal of Protein Chemistry. 19: 389-97. PMID 11212839 DOI: 10.1023/A:1026439531005 |
0.316 |
|
| 2000 |
van Berkel WJ, van den Heuvel RH, Versluis C, Heck AJ. Detection of intact megaDalton protein assemblies of vanillyl-alcohol oxidase by mass spectrometry. Protein Science : a Publication of the Protein Society. 9: 435-9. PMID 10752605 DOI: 10.1110/Ps.9.3.435 |
0.388 |
|
| 2000 |
Staroske T, O'Brien DP, Jørgensen TJ, Roepstorff P, Williams DH, Heck AJ. The formation of heterodimers by vancomycin group antibiotics. Chemistry (Weinheim An Der Bergstrasse, Germany). 6: 504-9. PMID 10747417 DOI: 10.1002/(Sici)1521-3765(20000204)6:3<504::Aid-Chem504>3.0.Co;2-5 |
0.309 |
|
| 2000 |
van der Kerk-van Hoof A, Heck AJ. Covalent and non-covalent dissociations of gas-phase complexes of avoparcin and bacterial receptor mimicking precursor peptides studied by collisionally activated decomposition mass spectrometry. Journal of Mass Spectrometry : Jms. 34: 813-9. PMID 10423562 DOI: 10.1002/(Sici)1096-9888(199908)34:8<813::Aid-Jms836>3.0.Co;2-7 |
0.316 |
|
| 1999 |
Lafitte D, Heck AJ, Hill TJ, Jumel K, Harding SE, Derrick PJ. Evidence of noncovalent dimerization of calmodulin. European Journal of Biochemistry / Febs. 261: 337-44. PMID 10103067 DOI: 10.1046/J.1432-1327.1999.00284.X |
0.35 |
|
| 1998 |
Lavanant, H, Heck A, Derrick P, Mellon F, Parr A, Dodd H, Giffard C, Horn N, Gasson M. Characterisation of genetically modified nisin molecules by Fourier transform ion cyclotron resonance mass spectrometry European Journal of Mass Spectrometry. 4: 405. DOI: 10.1255/Ejms.240 |
0.33 |
|
| 1995 |
Heck AJ, Nibbering NM. Gas phase bimolecular chemistry of isomeric C3H 6Br (+) cations. Journal of the American Society For Mass Spectrometry. 6: 11-8. PMID 24222056 DOI: 10.1016/1044-0305(94)00084-D |
0.65 |
|
| 1992 |
Heck AJ, de Koning LJ, Nibbering NM. Chemical behavior of the gas-phase pentacoordinated carbonium ion, C2H+7 International Journal of Mass Spectrometry and Ion Processes. 117: 145-169. DOI: 10.1016/0168-1176(92)80091-E |
0.637 |
|
| 1991 |
Heck AJ, de Koning LJ, Nibbering NM. On the structure of protonated methane. Journal of the American Society For Mass Spectrometry. 2: 453-8. PMID 24242765 DOI: 10.1016/1044-0305(91)80030-B |
0.637 |
|
| 1991 |
Heck AJ, de Koning LJ, Nibbering NM. On the structure and unimolecular chemistry of protonated halomethanes International Journal of Mass Spectrometry and Ion Processes. 109: 209-225. DOI: 10.1016/0168-1176(91)85105-U |
0.627 |
|
| 1991 |
Drewello T, Heck AJ, Nibbering NM. Electron-capture-induced decomposition of the supposed ethane dication Chemical Physics Letters. 178: 285-288. DOI: 10.1016/0009-2614(91)87070-R |
0.645 |
|
| 1990 |
Heck AJ, Drewello T, De Koning LJ, Nibbering NM. Low pressure ion/molecule clustering reactions towards cationic dimers International Journal of Mass Spectrometry and Ion Processes. 100: 611-624. DOI: 10.1016/0168-1176(90)85098-M |
0.643 |
|
| Show low-probability matches. |
