| Year |
Citation |
Score |
| 2024 |
Lin CP, Li H, Brogan DJ, Wang T, Akbari OS, Komives EA. CRISPR-RNA binding drives structural ordering that primes Cas7-11 for target cleavage. Biorxiv : the Preprint Server For Biology. PMID 39211128 DOI: 10.1101/2024.08.01.606276 |
0.319 |
|
| 2023 |
Komives EA. Dynamic allostery in thrombin-a review. Frontiers in Molecular Biosciences. 10: 1200465. PMID 37457835 DOI: 10.3389/fmolb.2023.1200465 |
0.347 |
|
| 2023 |
Sabo KA, Albekioni E, Caliger D, Coleman NJ, Thornberg E, Avellaneda Matteo D, Komives EA, Silletti S, Sohl CD. Capturing the Dynamic Conformational Changes of Human Isocitrate Dehydrogenase 1 (IDH1) upon Ligand and Metal Binding Using Hydrogen-Deuterium Exchange Mass Spectrometry. Biochemistry. PMID 36854124 DOI: 10.1021/acs.biochem.2c00636 |
0.306 |
|
| 2022 |
Molina JA, Galaz-Davison P, Komives EA, Artsimovitch I, Ramírez-Sarmiento CA. Allosteric couplings upon binding of RfaH to transcription elongation complexes. Nucleic Acids Research. PMID 35670666 DOI: 10.1093/nar/gkac453 |
0.319 |
|
| 2022 |
Peacock RB, McGrann T, Zaragoza S, Komives EA. How Thrombomodulin Enables W215A/E217A Thrombin to Cleave Protein C but Not Fibrinogen. Biochemistry. 61: 77-84. PMID 34978431 DOI: 10.1021/acs.biochem.1c00635 |
0.312 |
|
| 2021 |
Peacock RB, McGrann T, Tonelli M, Komives EA. Serine protease dynamics revealed by NMR analysis of the thrombin-thrombomodulin complex. Scientific Reports. 11: 9354. PMID 33931701 DOI: 10.1038/s41598-021-88432-z |
0.351 |
|
| 2020 |
Medina E, Villalobos P, Hamilton GL, Komives EA, Sanabria H, Ramírez-Sarmiento CA, Babul J. Intrinsically disordered regions of the DNA-binding domain of human FoxP1 facilitate domain swapping. Journal of Molecular Biology. PMID 32735805 DOI: 10.1016/J.Jmb.2020.07.017 |
0.398 |
|
| 2020 |
Lumpkin RJ, Baker RW, Leschziner AE, Komives EA. Structure and dynamics of the ASB9 CUL-RING E3 Ligase. Nature Communications. 11: 2866. PMID 32513959 DOI: 10.1038/S41467-020-16499-9 |
0.359 |
|
| 2020 |
Engen JR, Komives EA. Complementarity of Hydrogen/Deuterium Exchange Mass Spectrometry and Cryo-Electron Microscopy. Trends in Biochemical Sciences. PMID 32487353 DOI: 10.1016/J.Tibs.2020.05.005 |
0.346 |
|
| 2020 |
Zamora RA, Ramirez-Sarmiento CA, Castro-Fernández V, Villalobos P, Maturana P, Herrera-Morande A, Komives EA, Guixé V. Tuning of Conformational Dynamics Through Evolution-Based Design Modulates the Catalytic Adaptability of an Extremophilic Kinase Acs Catalysis. 10847-10857. DOI: 10.1021/Acscatal.0C01300 |
0.341 |
|
| 2020 |
Torres-Paris C, Xiao L, Chen Y, Alipranti FX, Masih M, Komives EA. The N-Terminal Fragment (ATF) Regulates the Dynamics and the Activity of the Protease Domain of the Urokinase-Type Plasminogen Activator (uPA) Biophysical Journal. 118: 53a. DOI: 10.1016/J.Bpj.2019.11.470 |
0.333 |
|
| 2020 |
Peacock RB, McGrann T, Komives EA. Investigating the Residue-Level Dynamics of the Thrombin-Thrombomodulin Interaction Biophysical Journal. 118: 52a. DOI: 10.1016/J.Bpj.2019.11.463 |
0.313 |
|
| 2020 |
Alipranti FX, Masih M, Torres-Paris C, Komives EA. S195A is a Catalytically Inactive Mutant of the Protease Domain of the Urokinase-Type Plasminogen Activator (uPA) Biophysical Journal. 118: 50a. DOI: 10.1016/J.Bpj.2019.11.455 |
0.316 |
|
| 2019 |
Galaz-Davison P, Molina JA, Silletti S, Komives EA, Knauer SH, Artsimovitch I, Ramírez-Sarmiento CA. Differential Local Stability Governs the Metamorphic Fold Switch of Bacterial Virulence Factor RfaH. Biophysical Journal. PMID 31810657 DOI: 10.1016/J.Bpj.2019.11.014 |
0.41 |
|
| 2019 |
Perez-Riba A, Komives E, Main ERG, Itzhaki LS. Decoupling a tandem-repeat protein: Impact of multiple loop insertions on a modular scaffold. Scientific Reports. 9: 15439. PMID 31659184 DOI: 10.1038/S41598-019-49905-4 |
0.383 |
|
| 2019 |
Kopcho N, Chang G, Komives EA. Dynamics of ABC Transporter P-glycoprotein in Three Conformational States. Scientific Reports. 9: 15092. PMID 31641149 DOI: 10.1038/S41598-019-50578-2 |
0.352 |
|
| 2019 |
Lumpkin R, Komives EA. DECA, a comprehensive, automatic post-processing program for HDX-MS data. Molecular & Cellular Proteomics : McP. PMID 31594786 DOI: 10.1074/Mcp.Tir119.001731 |
0.319 |
|
| 2019 |
Kalogriopoulos NA, Rees SD, Ngo T, Kopcho NJ, Ilatovskiy AV, Sun N, Komives EA, Chang G, Ghosh P, Kufareva I. Structural basis for GPCR-independent activation of heterotrimeric Gi proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 31363053 DOI: 10.1073/Pnas.1906658116 |
0.4 |
|
| 2019 |
Ramsey KM, Chen W, Marion JD, Bergqvist S, Komives EA. Exclusivity and Compensation in NFκB Dimer distributions and IκB inhibition. Biochemistry. PMID 31033276 DOI: 10.1021/Acs.Biochem.9B00008 |
0.655 |
|
| 2019 |
Markwick PRL, Peacock RB, Komives EA. Accurate Prediction of Amide Exchange in the Fast Limit Reveals Thrombin Allostery. Biophysical Journal. 116: 49-56. PMID 30558884 DOI: 10.1016/J.Bpj.2018.11.023 |
0.44 |
|
| 2019 |
Maity K, Heumann JM, McGrath AP, Kopcho NJ, Hsu P, Lee C, Mapes JH, Garza D, Krishnan S, Morgan GP, Hendargo KJ, Klose T, Rees SD, Medrano-Soto A, Saier MH, ... ... Komives EA, et al. Cryo-EM structure of OSCA1.2 fromOryza sativaelucidates the mechanical basis of potential membrane hyperosmolality gating. Proceedings of the National Academy of Sciences of the United States of America. 116: 14309-14318. DOI: 10.2210/Pdb6Oce/Pdb |
0.345 |
|
| 2019 |
Torres-Paris C, Chen Y, Komives EA. Effect of Plasmin Cleavage on the Dynamics of the Protease Domain of the Urokinase-Type Plasminogen Activator (uPA) Biophysical Journal. 116: 484a. DOI: 10.1016/J.Bpj.2018.11.2614 |
0.327 |
|
| 2018 |
Hard R, Li N, He W, Ross B, Mo GCH, Peng Q, Stein RSL, Komives E, Wang Y, Zhang J, Wang W. Deciphering and engineering chromodomain-methyllysine peptide recognition. Science Advances. 4: eaau1447. PMID 30417094 DOI: 10.1126/Sciadv.Aau1447 |
0.39 |
|
| 2018 |
Gudlur A, Zeraik AE, Hirve N, Rajanikanth V, Bobkov AA, Ma G, Zheng S, Wang Y, Zhou Y, Komives EA, Hogan PG. Calcium sensing by the STIM1 ER-luminal domain. Nature Communications. 9: 4536. PMID 30382093 DOI: 10.1038/S41467-018-06816-8 |
0.319 |
|
| 2018 |
Ramsey KM, Narang D, Komives EA. Prediction of the Presence of a Seventh Ankyrin Repeat in IκBε from Homology Modeling Combined with Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS). Protein Science : a Publication of the Protein Society. PMID 30133030 DOI: 10.1002/Pro.3459 |
0.665 |
|
| 2018 |
Rahnamoun H, Lee J, Sun Z, Lu H, Ramsey KM, Komives EA, Lauberth SM. RNAs interact with BRD4 to promote enhanced chromatin engagement and transcription activation. Nature Structural & Molecular Biology. 25: 687-697. PMID 30076409 DOI: 10.1038/S41594-018-0102-0 |
0.625 |
|
| 2018 |
Peacock R, Davis J, Markwick PRL, Komives EA. Dynamic Consequences of Mutation of Tryptophan 215 in Thrombin. Biochemistry. PMID 29634247 DOI: 10.1021/Acs.Biochem.8B00262 |
0.438 |
|
| 2018 |
Ramirez-Sarmiento CA, Komives EA. Hydrogen-deuterium exchange mass spectrometry reveals folding and allostery in protein-protein interactions. Methods (San Diego, Calif.). PMID 29627358 DOI: 10.1016/J.Ymeth.2018.04.001 |
0.373 |
|
| 2018 |
Narang D, Chen W, Ricci CG, Komives EA. RelA-containing NFκB dimers have strikingly different DNA-binding cavities in the absence of DNA. Journal of Molecular Biology. PMID 29625198 DOI: 10.1016/J.Jmb.2018.03.020 |
0.392 |
|
| 2018 |
Kromann-Hansen T, Lange EL, Lund IK, Høyer-Hansen G, Andreasen PA, Komives EA. Ligand binding modulates the structural dynamics and activity of urokinase-type plasminogen activator: A possible mechanism of plasminogen activation. Plos One. 13: e0192661. PMID 29420634 DOI: 10.1371/Journal.Pone.0192661 |
0.423 |
|
| 2018 |
Gudlur A, Eliza Zeraik A, Hirve N, Vangipurapu R, Bobkov A, Ma G, Zheng S, Wang Y, Zhou Y, Komives E, Hogan PG. STIM1 Function Is Controlled by Multiple Ca2+ Binding Sites in its Luminal Domain Biophysical Journal. 114: 285a. DOI: 10.1016/J.Bpj.2017.11.1635 |
0.342 |
|
| 2018 |
Chen W, Narang D, Ricci CG, Komives EA. Hidden Native State Ensembles of NFκB Dimers Provide Insights into their Different DNA-Binding Affinities Biophysical Journal. 114: 234a. DOI: 10.1016/J.Bpj.2017.11.1301 |
0.359 |
|
| 2017 |
West AMV, Komives EA, Corbett KD. Conformational dynamics of the Hop1 HORMA domain reveal a common mechanism with the spindle checkpoint protein Mad2. Nucleic Acids Research. PMID 29186573 DOI: 10.1093/Nar/Gkx1196 |
0.451 |
|
| 2017 |
Potoyan DA, Bueno C, Zheng W, Komives EA, Wolynes PG. Resolving the NFκB Heterodimer Binding Paradox: Strain and Frustration Guide the Binding of Dimeric Transcription Factors. Journal of the American Chemical Society. PMID 29183131 DOI: 10.1021/Jacs.7B08741 |
0.383 |
|
| 2017 |
Kim JK, Liu J, Hu X, Yu C, Roskamp K, Sankaran B, Huang L, Komives EA, Qiao F. Structural Basis for Shelterin Bridge Assembly. Molecular Cell. 68: 698-714.e5. PMID 29149597 DOI: 10.1016/J.Molcel.2017.10.032 |
0.377 |
|
| 2017 |
Ferreiro DU, Komives EA, Wolynes PG. Frustration, function and folding. Current Opinion in Structural Biology. 48: 68-73. PMID 29101782 DOI: 10.1016/J.Sbi.2017.09.006 |
0.352 |
|
| 2017 |
Lumpkin RJ, Gu H, Zhu Y, Leonard M, Ahmad AS, Clauser KR, Meyer JG, Bennett EJ, Komives EA. Site-specific identification and quantitation of endogenous SUMO modifications under native conditions. Nature Communications. 8: 1171. PMID 29079793 DOI: 10.1038/S41467-017-01271-3 |
0.385 |
|
| 2017 |
Wong JJW, Young TA, Zhang J, Liu S, Leser GP, Komives EA, Lamb RA, Zhou ZH, Salafsky J, Jardetzky TS. Monomeric ephrinB2 binding induces allosteric changes in Nipah virus G that precede its full activation. Nature Communications. 8: 781. PMID 28974687 DOI: 10.1038/S41467-017-00863-3 |
0.353 |
|
| 2017 |
Kromann-Hansen T, Louise Lange E, Peter Sørensen H, Hassanzadeh-Ghassabeh G, Huang M, Jensen JK, Muyldermans S, Declerck PJ, Komives EA, Andreasen PA. Discovery of a novel conformational equilibrium in urokinase-type plasminogen activator. Scientific Reports. 7: 3385. PMID 28611361 DOI: 10.1038/S41598-017-03457-7 |
0.42 |
|
| 2017 |
Carvajal AI, Vallejos G, Komives EA, Castro-Fernández V, Leonardo DA, Garratt RC, Ramírez-Sarmiento CA, Babul J. Unusual dimerization of a BcCsp mutant leads to reduced conformational dynamics. The Febs Journal. PMID 28457014 DOI: 10.7490/F1000Research.1113949.1 |
0.476 |
|
| 2017 |
Ramsey KM, Dembinski HE, Chen W, Ricci CG, Komives EA. DNA and IκBα both induce long range conformational changes in NFκB. Journal of Molecular Biology. PMID 28249778 DOI: 10.1016/J.Jmb.2017.02.017 |
0.658 |
|
| 2017 |
Dembinski HE, Wismer K, Vargas JD, Suryawanshi GW, Kern N, Kroon G, Dyson HJ, Hoffmann A, Komives EA. Functional importance of stripping in NFκB signaling revealed by a stripping-impaired IκBα mutant. Proceedings of the National Academy of Sciences of the United States of America. PMID 28167786 DOI: 10.1073/Pnas.1610192114 |
0.372 |
|
| 2017 |
Handley LD, Fuglestad B, Stearns K, Tonelli M, Fenwick RB, Markwick PR, Komives EA. NMR reveals a dynamic allosteric pathway in thrombin. Scientific Reports. 7: 39575. PMID 28059082 DOI: 10.1038/Srep39575 |
0.763 |
|
| 2017 |
Medina E, Reyes J, Villalobos P, Komives EA, Babul J, Ramirez-Sarmiento CA. Biophysical and Evolutionary Aspects of Domain Swapping in the Forkhead Domain of Human FoxP Proteins Biophysical Journal. 112: 168a. DOI: 10.1016/J.Bpj.2016.11.924 |
0.38 |
|
| 2017 |
Davis JR, Peacock R, Komives E. Insights into Dynamics of Thrombin W215 Mutants using Synapt G2Si with Ion Mobility Separation Biophysical Journal. 112: 63a. DOI: 10.1016/J.Bpj.2016.11.379 |
0.356 |
|
| 2017 |
Ramsey KM, Dembinski HE, Chen Y, Komives EA. NFκB and IκBα Engage in an ‘I Fold You, You Fold Me’ Interaction Excluding DNA Biophysical Journal. 112: 62a-63a. DOI: 10.1016/J.Bpj.2016.11.377 |
0.658 |
|
| 2017 |
Lumpkin R, Ahmad A, Chan M, Komives E. Dynamics and Assembly of ASB-Containing E3 Ubiquitin Ligases Biophysical Journal. 112: 62a. DOI: 10.1016/J.Bpj.2016.11.376 |
0.425 |
|
| 2017 |
Chen W, Ricci CG, McCammon JA, Komives EA. Transcriptional Regulation by Locking and Unlocking the Intrinsic Disorder in NfκB Biophysical Journal. 112: 352a. DOI: 10.1016/J.Bpj.2016.11.1911 |
0.473 |
|
| 2016 |
Schiffer JM, Malmstrom RD, Parnell J, Ramirez-Sarmiento C, Reyes J, Amaro RE, Komives EA. Model of the Ankyrin and SOCS Box Protein, ASB9, E3 Ligase Reveals a Mechanism for Dynamic Ubiquitin Transfer. Structure (London, England : 1993). PMID 27396830 DOI: 10.1016/J.Str.2016.05.016 |
0.576 |
|
| 2016 |
Medina E, Córdova C, Villalobos P, Reyes J, Komives EA, Ramírez-Sarmiento CA, Babul J. Three-Dimensional Domain Swapping Changes the Folding Mechanism of the Forkhead Domain of FoxP1. Biophysical Journal. 110: 2349-2360. PMID 27276253 DOI: 10.1016/J.Bpj.2016.04.043 |
0.444 |
|
| 2016 |
Mukherjee SP, Quintas PO, McNulty R, Komives EA, Dyson HJ. Structural characterization of the ternary complex that mediates termination of NF-κB signaling by IκBα. Proceedings of the National Academy of Sciences of the United States of America. PMID 27185953 DOI: 10.1073/Pnas.1603488113 |
0.314 |
|
| 2016 |
Potoyan DA, Zheng W, Ferreiro DU, Wolynes PG, Komives EA. PEST Control of Molecular Stripping of NFκB from DNA Transcription Sites. The Journal of Physical Chemistry. B. PMID 27098223 DOI: 10.1021/Acs.Jpcb.6B02359 |
0.338 |
|
| 2016 |
Trelle MB, Ramsey KM, Lee TC, Zheng W, Lamboy J, Wolynes PG, Deniz A, Komives EA. Binding of NFκB Appears to Twist the Ankyrin Repeat Domain of IκBα. Biophysical Journal. 110: 887-95. PMID 26910425 DOI: 10.1016/J.Bpj.2016.01.001 |
0.666 |
|
| 2015 |
Potoyan DA, Zheng W, Komives EA, Wolynes PG. Molecular stripping in the NF-κB/IκB/DNA genetic regulatory network. Proceedings of the National Academy of Sciences of the United States of America. PMID 26699500 DOI: 10.1073/Pnas.1520483112 |
0.357 |
|
| 2015 |
Handley LD, Treuheit NA, Venkatesh VJ, Komives EA. Thrombomodulin Binding Selects the Catalytically Active Form of Thrombin. Biochemistry. 54: 6650-8. PMID 26468766 DOI: 10.1021/Acs.Biochem.5B00825 |
0.819 |
|
| 2015 |
Ramírez-Sarmiento CA, Baez M, Zamora RA, Balasubramaniam D, Babul J, Komives EA, Guixé V. The folding unit of phosphofructokinase-2 as defined by the biophysical properties of a monomeric mutant. Biophysical Journal. 108: 2350-61. PMID 25954892 DOI: 10.1016/J.Bpj.2015.04.001 |
0.413 |
|
| 2015 |
Mangas I, Taylor P, Vilanova E, Estévez J, França TC, Komives E, Radi? Z. Resolving pathways of interaction of mipafox and a sarin analog with human acetylcholinesterase by kinetics, mass spectrometry and molecular modeling approaches. Archives of Toxicology. PMID 25743373 DOI: 10.1007/S00204-015-1481-1 |
0.3 |
|
| 2015 |
Balasubramaniam D, Schiffer J, Parnell J, Mir SP, Amaro RE, Komives EA. How the ankyrin and SOCS box protein, ASB9, binds to creatine kinase. Biochemistry. 54: 1673-80. PMID 25654263 DOI: 10.1021/Bi501420N |
0.663 |
|
| 2015 |
Komives E. Allosteric Networks in Thrombin Biophysical Journal. 108: 33a-34a. DOI: 10.1016/J.Bpj.2014.11.210 |
0.417 |
|
| 2014 |
Ferreiro DU, Komives EA, Wolynes PG. Frustration in biomolecules. Quarterly Reviews of Biophysics. 47: 285-363. PMID 25225856 DOI: 10.1017/S0033583514000092 |
0.344 |
|
| 2014 |
Boechi L, Pierce L, Komives EA, McCammon JA. Trypsinogen activation as observed in accelerated molecular dynamics simulations. Protein Science : a Publication of the Protein Society. 23: 1550-8. PMID 25131668 DOI: 10.1002/Pro.2532 |
0.471 |
|
| 2014 |
Perera VR, Newton GL, Parnell JM, Komives EA, Pogliano K. Purification and characterization of the Staphylococcus aureus bacillithiol transferase BstA. Biochimica Et Biophysica Acta. 1840: 2851-61. PMID 24821014 DOI: 10.1016/J.Bbagen.2014.05.001 |
0.3 |
|
| 2014 |
Balasubramaniam D, Komives EA. The phylogenetics of dynamics in DNA clamp proteins. Structure (London, England : 1993). 22: 511-2. PMID 24717558 DOI: 10.1016/J.Str.2014.03.006 |
0.341 |
|
| 2014 |
Dembinski H, Wismer K, Balasubramaniam D, Gonzalez HA, Alverdi V, Iakoucheva LM, Komives EA. Predicted disorder-to-order transition mutations in IκBα disrupt function. Physical Chemistry Chemical Physics : Pccp. 16: 6480-5. PMID 24605363 DOI: 10.1039/C3Cp54427C |
0.348 |
|
| 2014 |
Meyer JG, Kim S, Maltby DA, Ghassemian M, Bandeira N, Komives EA. Expanding proteome coverage with orthogonal-specificity α-lytic proteases. Molecular & Cellular Proteomics : McP. 13: 823-35. PMID 24425750 DOI: 10.1074/Mcp.M113.034710 |
0.351 |
|
| 2014 |
Balasubramaniam D, Schiffer J, Komives E. Regulation of Creatine Kinase by ASB9 Biophysical Journal. 106: 675a. DOI: 10.1016/J.Bpj.2013.11.3738 |
0.453 |
|
| 2014 |
Dembinski HE, Komives EA. The Acidic Residues of the IκBα PEST Sequence are Responsible for “Stripping” NFκB from DNA Biophysical Journal. 106: 660a. DOI: 10.1016/J.Bpj.2013.11.3656 |
0.327 |
|
| 2014 |
Handley LD, Stearns KN, Komives EA. The Dynamic Functional Consequences of the Thrombin-Thrombomodulin Interaction Biophysical Journal. 106: 649a. DOI: 10.1016/J.Bpj.2013.11.3594 |
0.426 |
|
| 2013 |
Li N, Stein RS, He W, Komives E, Wang W. Identification of methyllysine peptides binding to chromobox protein homolog 6 chromodomain in the human proteome. Molecular & Cellular Proteomics : McP. 12: 2750-60. PMID 23842000 DOI: 10.1074/Mcp.O112.025015 |
0.372 |
|
| 2013 |
Ramírez-Sarmiento CA, Baez M, Wilson CA, Babul J, Komives EA, Guixé V. Observation of solvent penetration during cold denaturation of E. coli phosphofructokinase-2. Biophysical Journal. 104: 2254-63. PMID 23708365 DOI: 10.1016/J.Bpj.2013.04.024 |
0.411 |
|
| 2013 |
Fuglestad B, Gasper PM, McCammon JA, Markwick PR, Komives EA. Correlated motions and residual frustration in thrombin. The Journal of Physical Chemistry. B. 117: 12857-63. PMID 23621631 DOI: 10.1021/Jp402107U |
0.78 |
|
| 2013 |
Lamboy JA, Kim H, Dembinski H, Ha T, Komives EA. Single-molecule FRET reveals the native-state dynamics of the IκBα ankyrin repeat domain. Journal of Molecular Biology. 425: 2578-90. PMID 23619335 DOI: 10.1016/J.Jmb.2013.04.015 |
0.316 |
|
| 2013 |
Stein RS, Li N, He W, Komives E, Wang W. Recognition of methylated peptides by Drosophila melanogaster polycomb chromodomain. Journal of Proteome Research. 12: 1467-77. PMID 23320494 DOI: 10.1021/Pr3011205 |
0.346 |
|
| 2013 |
Cervantes CF, Handley LD, Sue SC, Dyson HJ, Komives EA. Long-range effects and functional consequences of stabilizing mutations in the ankyrin repeat domain of IκBα. Journal of Molecular Biology. 425: 902-13. PMID 23274114 DOI: 10.1016/J.Jmb.2012.12.012 |
0.8 |
|
| 2013 |
Balasubramaniam D, Komives EA. Hydrogen-exchange mass spectrometry for the study of intrinsic disorder in proteins. Biochimica Et Biophysica Acta. 1834: 1202-9. PMID 23099262 DOI: 10.1016/J.Bbapap.2012.10.009 |
0.334 |
|
| 2012 |
Schafer NP, Hoffman RM, Burger A, Craig PO, Komives EA, Wolynes PG. Discrete kinetic models from funneled energy landscape simulations. Plos One. 7: e50635. PMID 23251375 DOI: 10.1371/Journal.Pone.0050635 |
0.345 |
|
| 2012 |
Gasper PM, Fuglestad B, Komives EA, Markwick PR, McCammon JA. Allosteric networks in thrombin distinguish procoagulant vs. anticoagulant activities. Proceedings of the National Academy of Sciences of the United States of America. 109: 21216-22. PMID 23197839 DOI: 10.1073/Pnas.1218414109 |
0.787 |
|
| 2012 |
Fuglestad B, Gasper PM, Tonelli M, McCammon JA, Markwick PR, Komives EA. The dynamic structure of thrombin in solution. Biophysical Journal. 103: 79-88. PMID 22828334 DOI: 10.1016/J.Bpj.2012.05.047 |
0.767 |
|
| 2012 |
Dyson HJ, Komives EA. Role of disorder in IκB-NFκB interaction. Iubmb Life. 64: 499-505. PMID 22573609 DOI: 10.1002/Iub.1044 |
0.345 |
|
| 2012 |
Komives EA. Consequences of fuzziness in the NFκB/IκBα interaction. Advances in Experimental Medicine and Biology. 725: 74-85. PMID 22399319 DOI: 10.1007/978-1-4614-0659-4_5 |
0.333 |
|
| 2012 |
Treuheit NA, Komives EA. Probing the Pro- and Anti-Coagulant Interactions of Thrombin Biophysical Journal. 102: 50a. DOI: 10.1016/J.Bpj.2011.11.302 |
0.809 |
|
| 2012 |
Dembinski HE, Alverdi V, Gonzalez H, Komives E. Exploration of the Role of the IκB Pest Sequence in Stripping NFκB from DNA Biophysical Journal. 102: 461a. DOI: 10.1016/J.Bpj.2011.11.2529 |
0.305 |
|
| 2012 |
Craig PO, Hoffman RM, Lätzer J, Weinkam P, Komives EA, Wolynes PG. Analysis of Native H/D Exchange Dynamics in EX1/EX2 Conditions using Structure Based Model Simulations Biophysical Journal. 102: 448a. DOI: 10.1016/J.Bpj.2011.11.2459 |
0.35 |
|
| 2012 |
Fuglestad BA, Komives EA. Function and Dynamics of Thrombin by NMR Biophysical Journal. 102: 391a. DOI: 10.1016/J.Bpj.2011.11.2136 |
0.773 |
|
| 2011 |
Guttman M, Komives EA. The structure, dynamics, and binding of the LA45 module pair of the low-density lipoprotein receptor suggest an important role for LA4 in ligand release. Biochemistry. 50: 11001-8. PMID 22091758 DOI: 10.1021/Bi2014486 |
0.595 |
|
| 2011 |
Craig PO, Lätzer J, Weinkam P, Hoffman RM, Ferreiro DU, Komives EA, Wolynes PG. Prediction of native-state hydrogen exchange from perfectly funneled energy landscapes. Journal of the American Chemical Society. 133: 17463-72. PMID 21913704 DOI: 10.1021/Ja207506Z |
0.371 |
|
| 2011 |
Mulvihill MM, Guttman M, Komives EA. Protein interactions among Fe65, the low-density lipoprotein receptor-related protein, and the amyloid precursor protein. Biochemistry. 50: 6208-16. PMID 21650223 DOI: 10.1021/Bi200508F |
0.768 |
|
| 2011 |
Lamboy JA, Kim H, Lee KS, Ha T, Komives EA. Visualization of the nanospring dynamics of the IkappaBalpha ankyrin repeat domain in real time. Proceedings of the National Academy of Sciences of the United States of America. 108: 10178-83. PMID 21628581 DOI: 10.1073/Pnas.1102226108 |
0.341 |
|
| 2011 |
Treuheit NA, Beach MA, Komives EA. Thermodynamic compensation upon binding to exosite 1 and the active site of thrombin. Biochemistry. 50: 4590-6. PMID 21526769 DOI: 10.1021/Bi2004069 |
0.806 |
|
| 2011 |
DeVries I, Ferreiro DU, Sánchez IE, Komives EA. Folding kinetics of the cooperatively folded subdomain of the IκBα ankyrin repeat domain. Journal of Molecular Biology. 408: 163-76. PMID 21329696 DOI: 10.1016/J.Jmb.2011.02.021 |
0.781 |
|
| 2011 |
Ferreiro DU, Hegler JA, Komives EA, Wolynes PG. On the role of frustration in the energy landscapes of allosteric proteins. Proceedings of the National Academy of Sciences of the United States of America. 108: 3499-503. PMID 21273505 DOI: 10.1073/Pnas.1018980108 |
0.4 |
|
| 2011 |
Sue SC, Alverdi V, Komives EA, Dyson HJ. Detection of a ternary complex of NF-kappaB and IkappaBalpha with DNA provides insights into how IkappaBalpha removes NF-kappaB from transcription sites. Proceedings of the National Academy of Sciences of the United States of America. 108: 1367-72. PMID 21220295 DOI: 10.1073/Pnas.1014323108 |
0.339 |
|
| 2011 |
Cervantes CF, Bergqvist S, Kjaergaard M, Kroon G, Sue SC, Dyson HJ, Komives EA. The RelA nuclear localization signal folds upon binding to IκBα. Journal of Molecular Biology. 405: 754-64. PMID 21094161 DOI: 10.1016/J.Jmb.2010.10.055 |
0.807 |
|
| 2011 |
Komives E. Functional Consequences of Intrinsic Disorder in the NFkB-IkB Interaction Biophysical Journal. 100: 5a. DOI: 10.1016/J.Bpj.2010.12.237 |
0.464 |
|
| 2010 |
Devries IL, Hampton-Smith RJ, Mulvihill MM, Alverdi V, Peet DJ, Komives EA. Consequences of IkappaB alpha hydroxylation by the factor inhibiting HIF (FIH). Febs Letters. 584: 4725-30. PMID 21056038 DOI: 10.1016/J.Febslet.2010.10.060 |
0.787 |
|
| 2010 |
Mathes E, Wang L, Komives E, Ghosh G. Flexible regions within I{kappa}B{alpha} create the ubiquitin-independent degradation signal. The Journal of Biological Chemistry. 285: 32927-36. PMID 20682784 DOI: 10.1074/Jbc.M110.107326 |
0.322 |
|
| 2010 |
Gertsman I, Fu CY, Huang R, Komives EA, Johnson JE. Critical salt bridges guide capsid assembly, stability, and maturation behavior in bacteriophage HK97. Molecular & Cellular Proteomics : McP. 9: 1752-63. PMID 20332083 DOI: 10.1074/Mcp.M000039-Mcp201 |
0.412 |
|
| 2010 |
Guttman M, Prieto JH, Handel TM, Domaille PJ, Komives EA. Structure of the minimal interface between ApoE and LRP. Journal of Molecular Biology. 398: 306-19. PMID 20303980 DOI: 10.1016/J.Jmb.2010.03.022 |
0.807 |
|
| 2010 |
Gertsman I, Komives EA, Johnson JE. HK97 maturation studied by crystallography and H/2H exchange reveals the structural basis for exothermic particle transitions. Journal of Molecular Biology. 397: 560-74. PMID 20093122 DOI: 10.1016/J.Jmb.2010.01.016 |
0.33 |
|
| 2010 |
Markwick PR, Cervantes CF, Abel BL, Komives EA, Blackledge M, McCammon JA. Enhanced conformational space sampling improves the prediction of chemical shifts in proteins. Journal of the American Chemical Society. 132: 1220-1. PMID 20063881 DOI: 10.1021/Ja9093692 |
0.791 |
|
| 2010 |
Ferreiro DU, Komives EA. Molecular mechanisms of system control of NF-kappaB signaling by IkappaBalpha. Biochemistry. 49: 1560-7. PMID 20055496 DOI: 10.1021/Bi901948J |
0.366 |
|
| 2010 |
Guttman M, Prieto JH, Croy JE, Komives EA. Decoding of lipoprotein-receptor interactions: properties of ligand binding modules governing interactions with apolipoprotein E. Biochemistry. 49: 1207-16. PMID 20030366 DOI: 10.1021/Bi9017208 |
0.793 |
|
| 2010 |
Guttman M, Komives E. Fusion construct of CR17 from LRP-1 and ApoE residues 130-149 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Kny/Pdb |
0.526 |
|
| 2010 |
Guttman M, Komives E. Solution Structure of complement repeat CR17 from LRP-1 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Knx/Pdb |
0.508 |
|
| 2010 |
Craig PO, Lätzer J, Weinkam P, Hoffman R, Komives E, Wolynes P. Prediction of H Exchange from Perfectly Funneled Structure Based Models Biophysical Journal. 98: 638a. DOI: 10.1016/J.Bpj.2009.12.3493 |
0.405 |
|
| 2010 |
Hoffman RM, Craig PO, DeVries IL, Komives EA, Wolynes PG. Folding Kinetics of IkB: Excursions Through the Energy Landscape Biophysical Journal. 98: 200a. DOI: 10.1016/J.Bpj.2009.12.1067 |
0.795 |
|
| 2009 |
Bergqvist S, Alverdi V, Mengel B, Hoffmann A, Ghosh G, Komives EA. Kinetic enhancement of NF-kappaBxDNA dissociation by IkappaBalpha. Proceedings of the National Academy of Sciences of the United States of America. 106: 19328-33. PMID 19887633 DOI: 10.1073/Pnas.0908797106 |
0.368 |
|
| 2009 |
Guttman M, Betts GN, Barnes H, Ghassemian M, van der Geer P, Komives EA. Interactions of the NPXY microdomains of the low density lipoprotein receptor-related protein 1. Proteomics. 9: 5016-28. PMID 19771558 DOI: 10.1002/Pmic.200900457 |
0.618 |
|
| 2009 |
Cervantes CF, Markwick PR, Sue SC, McCammon JA, Dyson HJ, Komives EA. Functional dynamics of the folded ankyrin repeats of I kappa B alpha revealed by nuclear magnetic resonance. Biochemistry. 48: 8023-31. PMID 19591507 DOI: 10.1021/Bi900712R |
0.808 |
|
| 2009 |
Gertsman I, Gan L, Guttman M, Lee K, Speir JA, Duda RL, Hendrix RW, Komives EA, Johnson JE. An unexpected twist in viral capsid maturation. Nature. 458: 646-50. PMID 19204733 DOI: 10.1038/Nature07686 |
0.582 |
|
| 2008 |
Bergqvist S, Ghosh G, Komives EA. The IkappaBalpha/NF-kappaB complex has two hot spots, one at either end of the interface. Protein Science : a Publication of the Protein Society. 17: 2051-8. PMID 18824506 DOI: 10.1110/Ps.037481.108 |
0.426 |
|
| 2008 |
Koeppe JR, Beach MA, Baerga-Ortiz A, Kerns SJ, Komives EA. Mutations in the fourth EGF-like domain affect thrombomodulin-induced changes in the active site of thrombin. Biochemistry. 47: 10933-9. PMID 18803401 DOI: 10.1021/Bi8008278 |
0.818 |
|
| 2008 |
Truhlar SM, Cervantes CF, Torpey JW, Kjaergaard M, Komives EA. Rapid mass spectrometric analysis of 15N-Leu incorporation fidelity during preparation of specifically labeled NMR samples. Protein Science : a Publication of the Protein Society. 17: 1636-9. PMID 18567787 DOI: 10.1110/Ps.036418.108 |
0.781 |
|
| 2008 |
Sue SC, Cervantes C, Komives EA, Dyson HJ. Transfer of flexibility between ankyrin repeats in IkappaB* upon formation of the NF-kappaB complex. Journal of Molecular Biology. 380: 917-31. PMID 18565540 DOI: 10.1016/J.Jmb.2008.05.048 |
0.822 |
|
| 2008 |
Truhlar SM, Mathes E, Cervantes CF, Ghosh G, Komives EA. Pre-folding IkappaBalpha alters control of NF-kappaB signaling. Journal of Molecular Biology. 380: 67-82. PMID 18511071 DOI: 10.1016/J.Jmb.2008.02.053 |
0.812 |
|
| 2008 |
Ferreiro DU, Walczak AM, Komives EA, Wolynes PG. The energy landscapes of repeat-containing proteins: topology, cooperativity, and the folding funnels of one-dimensional architectures. Plos Computational Biology. 4: e1000070. PMID 18483553 DOI: 10.1371/Journal.Pcbi.1000070 |
0.395 |
|
| 2008 |
Truhlar SM, Komives EA. LRR domain folding: just put a cap on it! Structure (London, England : 1993). 16: 655-7. PMID 18462667 DOI: 10.1016/J.Str.2008.04.002 |
0.351 |
|
| 2008 |
Betts GN, van der Geer P, Komives EA. Structural and functional consequences of tyrosine phosphorylation in the LRP1 cytoplasmic domain. The Journal of Biological Chemistry. 283: 15656-64. PMID 18381291 DOI: 10.1074/Jbc.M709514200 |
0.393 |
|
| 2008 |
Barrick D, Ferreiro DU, Komives EA. Folding landscapes of ankyrin repeat proteins: experiments meet theory. Current Opinion in Structural Biology. 18: 27-34. PMID 18243686 DOI: 10.1016/J.Sbi.2007.12.004 |
0.638 |
|
| 2007 |
Ferreiro DU, Hegler JA, Komives EA, Wolynes PG. Localizing frustration in native proteins and protein assemblies. Proceedings of the National Academy of Sciences of the United States of America. 104: 19819-24. PMID 18077414 DOI: 10.1073/Pnas.0709915104 |
0.408 |
|
| 2007 |
Anand GS, Hotchko M, Brown SH, Ten Eyck LF, Komives EA, Taylor SS. R-subunit isoform specificity in protein kinase A: distinct features of protein interfaces in PKA types I and II by amide H/2H exchange mass spectrometry. Journal of Molecular Biology. 374: 487-99. PMID 17942118 DOI: 10.1016/J.Jmb.2007.09.035 |
0.8 |
|
| 2007 |
Ferreiro DU, Komives EA. The plastic landscape of repeat proteins. Proceedings of the National Academy of Sciences of the United States of America. 104: 7735-6. PMID 17483477 DOI: 10.1073/Pnas.0702682104 |
0.408 |
|
| 2007 |
Lätzer J, Papoian GA, Prentiss MC, Komives EA, Wolynes PG. Induced fit, folding, and recognition of the NF-kappaB-nuclear localization signals by IkappaBalpha and IkappaBbeta. Journal of Molecular Biology. 367: 262-74. PMID 17257619 DOI: 10.1016/J.Jmb.2006.12.006 |
0.397 |
|
| 2007 |
Ferreiro DU, Cervantes CF, Truhlar SM, Cho SS, Wolynes PG, Komives EA. Stabilizing IkappaBalpha by "consensus" design. Journal of Molecular Biology. 365: 1201-16. PMID 17174335 DOI: 10.1016/J.Jmb.2006.11.044 |
0.801 |
|
| 2007 |
Cervantes CF, Komives EA, Dyson J, Sue SC, Kroon G. Dynamics of IkBa Probed by NMR The Faseb Journal. 21. DOI: 10.1096/Fasebj.21.5.A655-C |
0.766 |
|
| 2006 |
Truhlar SM, Torpey JW, Komives EA. Regions of IkappaBalpha that are critical for its inhibition of NF-kappaB.DNA interaction fold upon binding to NF-kappaB. Proceedings of the National Academy of Sciences of the United States of America. 103: 18951-6. PMID 17148610 DOI: 10.1073/Pnas.0605794103 |
0.382 |
|
| 2006 |
Truhlar SM, Croy CH, Torpey JW, Koeppe JR, Komives EA. Solvent accessibility of protein surfaces by amide H/2H exchange MALDI-TOF mass spectrometry. Journal of the American Society For Mass Spectrometry. 17: 1490-7. PMID 16934999 DOI: 10.1016/J.Jasms.2006.07.023 |
0.724 |
|
| 2006 |
Koeppe JR, Komives EA. Amide H/2H exchange reveals a mechanism of thrombin activation. Biochemistry. 45: 7724-32. PMID 16784223 DOI: 10.1021/Bi060405H |
0.76 |
|
| 2006 |
Bergqvist S, Croy CH, Kjaergaard M, Huxford T, Ghosh G, Komives EA. Thermodynamics reveal that helix four in the NLS of NF-kappaB p65 anchors IkappaBalpha, forming a very stable complex. Journal of Molecular Biology. 360: 421-34. PMID 16756995 DOI: 10.1016/J.Jmb.2006.05.014 |
0.371 |
|
| 2006 |
Hotchko M, Anand GS, Komives EA, Ten Eyck LF. Automated extraction of backbone deuteration levels from amide H/2H mass spectrometry experiments. Protein Science : a Publication of the Protein Society. 15: 583-601. PMID 16501228 DOI: 10.1110/Ps.051774906 |
0.794 |
|
| 2006 |
Shi J, Koeppe JR, Komives EA, Taylor P. Ligand-induced conformational changes in the acetylcholine-binding protein analyzed by hydrogen-deuterium exchange mass spectrometry. The Journal of Biological Chemistry. 281: 12170-7. PMID 16484218 DOI: 10.1074/Jbc.M600154200 |
0.752 |
|
| 2005 |
Mandell JG, Baerga-Ortiz A, Croy CH, Falick AM, Komives EA. Application of amide proton exchange mass spectrometry for the study of protein-protein interactions. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit20.9. PMID 18429282 DOI: 10.1002/0471140864.Ps2009S40 |
0.798 |
|
| 2005 |
Koeppe JR, Seitova A, Mather T, Komives EA. Thrombomodulin tightens the thrombin active site loops to promote protein C activation. Biochemistry. 44: 14784-91. PMID 16274226 DOI: 10.1021/Bi0510577 |
0.746 |
|
| 2005 |
Ferreiro DU, Cho SS, Komives EA, Wolynes PG. The energy landscape of modular repeat proteins: topology determines folding mechanism in the ankyrin family. Journal of Molecular Biology. 354: 679-92. PMID 16257414 DOI: 10.1016/J.Jmb.2005.09.078 |
0.384 |
|
| 2005 |
Mandell JG, Baerga-Ortiz A, Falick AM, Komives EA. Measurement of solvent accessibility at protein-protein interfaces. Methods in Molecular Biology (Clifton, N.J.). 305: 65-80. PMID 15939994 DOI: 10.1385/1-59259-912-5:065 |
0.807 |
|
| 2005 |
Wood MJ, Helena Prieto J, Komives EA. Structural and functional consequences of methionine oxidation in thrombomodulin. Biochimica Et Biophysica Acta. 1703: 141-7. PMID 15680222 DOI: 10.1016/J.Bbapap.2004.09.007 |
0.365 |
|
| 2005 |
Prieto JH, Sampoli Benitez BA, Melacini G, Johnson DA, Wood MJ, Komives EA. Dynamics of the fragment of thrombomodulin containing the fourth and fifth epidermal growth factor-like domains correlate with function. Biochemistry. 44: 1225-33. PMID 15667216 DOI: 10.1021/Bi0478852 |
0.779 |
|
| 2005 |
Komives EA. Protein-protein interaction dynamics by amide H/ 2H exchange mass spectrometry International Journal of Mass Spectrometry. 240: 285-290. DOI: 10.1016/J.Ijms.2004.09.016 |
0.451 |
|
| 2004 |
Croy CH, Bergqvist S, Huxford T, Ghosh G, Komives EA. Biophysical characterization of the free IkappaBalpha ankyrin repeat domain in solution. Protein Science : a Publication of the Protein Society. 13: 1767-77. PMID 15215520 DOI: 10.1110/Ps.04731004 |
0.46 |
|
| 2004 |
Croy JE, Brandon T, Komives EA. Two apolipoprotein E mimetic peptides, ApoE(130-149) and ApoE(141-155)2, bind to LRP1. Biochemistry. 43: 7328-35. PMID 15182176 DOI: 10.1021/Bi036208P |
0.769 |
|
| 2004 |
Croy CH, Koeppe JR, Bergqvist S, Komives EA. Allosteric changes in solvent accessibility observed in thrombin upon active site occupation. Biochemistry. 43: 5246-55. PMID 15122890 DOI: 10.1021/Bi0499718 |
0.763 |
|
| 2004 |
Baerga-Ortiz A, Bergqvist S, Mandell JG, Komives EA. Two different proteins that compete for binding to thrombin have opposite kinetic and thermodynamic profiles. Protein Science : a Publication of the Protein Society. 13: 166-76. PMID 14691232 DOI: 10.1110/Ps.03120604 |
0.812 |
|
| 2003 |
Croy JE, Shin WD, Knauer MF, Knauer DJ, Komives EA. All three LDL receptor homology regions of the LDL receptor-related protein bind multiple ligands. Biochemistry. 42: 13049-57. PMID 14596620 DOI: 10.1021/Bi034752S |
0.771 |
|
| 2003 |
Anand GS, Law D, Mandell JG, Snead AN, Tsigelny I, Taylor SS, Ten Eyck LF, Komives EA. Identification of the protein kinase A regulatory RIalpha-catalytic subunit interface by amide H/2H exchange and protein docking. Proceedings of the National Academy of Sciences of the United States of America. 100: 13264-9. PMID 14583592 DOI: 10.1073/Pnas.2232255100 |
0.775 |
|
| 2003 |
Wood MJ, Becvar LA, Prieto JH, Melacini G, Komives EA. NMR structures reveal how oxidation inactivates thrombomodulin. Biochemistry. 42: 11932-42. PMID 14556624 DOI: 10.1021/Bi034646Q |
0.784 |
|
| 2002 |
Huxford T, Mishler D, Phelps CB, Huang DB, Sengchanthalangsy LL, Reeves R, Hughes CA, Komives EA, Ghosh G. Solvent exposed non-contacting amino acids play a critical role in NF-kappaB/IkappaBalpha complex formation. Journal of Molecular Biology. 324: 587-97. PMID 12460563 DOI: 10.2210/Pdb1My5/Pdb |
0.65 |
|
| 2002 |
Whiles JA, Glover KJ, Vold RR, Komives EA. Methods for studying transmembrane peptides in bicelles: consequences of hydrophobic mismatch and peptide sequence. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 158: 149-56. PMID 12419680 DOI: 10.1016/S1090-7807(02)00068-X |
0.663 |
|
| 2002 |
Anand GS, Hughes CA, Jones JM, Taylor SS, Komives EA. Amide H/2H exchange reveals communication between the cAMP and catalytic subunit-binding sites in the R(I)alpha subunit of protein kinase A. Journal of Molecular Biology. 323: 377-86. PMID 12381327 DOI: 10.1016/S0022-2836(02)00919-1 |
0.662 |
|
| 2002 |
Baerga-Ortiz A, Hughes CA, Mandell JG, Komives EA. Epitope mapping of a monoclonal antibody against human thrombin by H/D-exchange mass spectrometry reveals selection of a diverse sequence in a highly conserved protein. Protein Science : a Publication of the Protein Society. 11: 1300-8. PMID 12021429 DOI: 10.1110/Ps.4670102 |
0.786 |
|
| 2002 |
Komives EA, Baerga-Ortiz A, Mandell JG, Hughes CA. Biophysics of protein-protein interfaces using biacore, NMR and amide exchange Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 119-120. |
0.79 |
|
| 2001 |
Glover KJ, Whiles JA, Wood MJ, Melacini G, Komives EA, Vold RR. Conformational dimorphism and transmembrane orientation of prion protein residues 110-136 in bicelles. Biochemistry. 40: 13137-42. PMID 11683621 DOI: 10.1021/Bi011485M |
0.701 |
|
| 2001 |
Glover KJ, Whiles JA, Wu G, Yu N, Deems R, Struppe JO, Stark RE, Komives EA, Vold RR. Structural evaluation of phospholipid bicelles for solution-state studies of membrane-associated biomolecules. Biophysical Journal. 81: 2163-71. PMID 11566787 DOI: 10.1016/S0006-3495(01)75864-X |
0.662 |
|
| 2001 |
Hughes CA, Mandell JG, Anand GS, Stock AM, Komives EA. Phosphorylation causes subtle changes in solvent accessibility at the interdomain interface of methylesterase CheB. Journal of Molecular Biology. 307: 967-76. PMID 11286548 DOI: 10.1006/Jmbi.2001.4523 |
0.798 |
|
| 2001 |
Mandell JG, Baerga-Ortiz A, Akashi S, Takio K, Komives EA. Solvent accessibility of the thrombin-thrombomodulin interface. Journal of Molecular Biology. 306: 575-89. PMID 11178915 DOI: 10.1006/Jmbi.2000.4416 |
0.808 |
|
| 2001 |
Whiles JA, Brasseur R, Glover KJ, Melacini G, Komives EA, Vold RR. Orientation and effects of mastoparan X on phospholipid bicelles. Biophysical Journal. 80: 280-93. PMID 11159401 DOI: 10.1016/S0006-3495(01)76013-4 |
0.662 |
|
| 2000 |
Wood MJ, Sampoli Benitez BA, Komives EA. Solution structure of the smallest cofactor-active fragment of thrombomodulin. Nature Structural Biology. 7: 200-4. PMID 10700277 DOI: 10.1038/73302 |
0.355 |
|
| 2000 |
Baerga-Ortiz A, Rezaie AR, Komives EA. Electrostatic dependence of the thrombin-thrombomodulin interaction. Journal of Molecular Biology. 296: 651-8. PMID 10669614 DOI: 10.1006/Jmbi.1999.3447 |
0.715 |
|
| 1999 |
Glover KJ, Martini PM, Vold RR, Komives EA. Preparation of insoluble transmembrane peptides: glycophorin-A, prion (110-137), and FGFR (368-397). Analytical Biochemistry. 272: 270-4. PMID 10415099 DOI: 10.1006/Abio.1999.4182 |
0.651 |
|
| 1999 |
Zhang Z, Komives EA, Sugio S, Blacklow SC, Narayana N, Xuong NH, Stock AM, Petsko GA, Ringe D. The role of water in the catalytic efficiency of triosephosphate isomerase. Biochemistry. 38: 4389-97. PMID 10194358 DOI: 10.1021/Bi9826759 |
0.59 |
|
| 1999 |
Wood MJ, Komives EA. Production of large quantities of isotopically labeled protein in Pichia pastoris by fermentation. Journal of Biomolecular Nmr. 13: 149-59. PMID 10070756 DOI: 10.1023/A:1008398313350 |
0.347 |
|
| 1999 |
Mentz S, de Lacalle S, Baerga-Ortiz A, Knauer MF, Knauer DJ, Komives EA. Mechanism of thrombin clearance by human astrocytoma cells. Journal of Neurochemistry. 72: 980-7. PMID 10037469 DOI: 10.1046/J.1471-4159.1999.0720980.X |
0.739 |
|
| 1998 |
Mandell JG, Falick AM, Komives EA. Identification of protein-protein interfaces by decreased amide proton solvent accessibility. Proceedings of the National Academy of Sciences of the United States of America. 95: 14705-10. PMID 9843953 DOI: 10.1073/Pnas.95.25.14705 |
0.788 |
|
| 1998 |
Greenwald J, Le V, Corrigan A, Fischer W, Komives E, Vale W, Choe S. Characterization of the extracellular ligand-binding domain of the type II activin receptor. Biochemistry. 37: 16711-8. PMID 9843440 DOI: 10.1021/Bi981939O |
0.72 |
|
| 1998 |
Struppe J, Komives EA, Taylor SS, Vold RR. 2H NMR studies of a myristoylated peptide in neutral and acidic phospholipid bicelles. Biochemistry. 37: 15523-7. PMID 9799515 DOI: 10.1021/Bi981326B |
0.365 |
|
| 1998 |
Mandell JG, Falick AM, Komives EA. Measurement of amide hydrogen exchange by MALDI-TOF mass spectrometry. Analytical Chemistry. 70: 3987-95. PMID 9784743 DOI: 10.1021/Ac980553G |
0.756 |
|
| 1997 |
Sampoli Benitez BA, Hunter MJ, Meininger DP, Komives EA. Structure of the fifth EGF-like domain of thrombomodulin: An EGF-like domain with a novel disulfide-bonding pattern. Journal of Molecular Biology. 273: 913-26. PMID 9367781 DOI: 10.1006/Jmbi.1997.1356 |
0.409 |
|
| 1997 |
Vindigni A, White CE, Komives EA, Di Cera E. Energetics of thrombin-thrombomodulin interaction. Biochemistry. 36: 6674-81. PMID 9184147 DOI: 10.1021/Bi962766A |
0.462 |
|
| 1996 |
Komives EA, Lougheed JC, Zhang Z, Sugio S, Narayana N, Xuong NH, Petsko GA, Ringe D. The structural basis for pseudoreversion of the H95N lesion by the secondary S96P mutation in triosephosphate isomerase. Biochemistry. 35: 15474-84. PMID 8952501 DOI: 10.1021/Bi961556V |
0.331 |
|
| 1996 |
White CE, Hunter MJ, Meininger DP, Garrod S, Komives EA. The fifth epidermal growth factor-like domain of thrombomodulin does not have an epidermal growth factor-like disulfide bonding pattern Proceedings of the National Academy of Sciences of the United States of America. 93: 10177-10182. PMID 8816772 DOI: 10.1073/Pnas.93.19.10177 |
0.349 |
|
| 1996 |
Hrabal R, Komives EA, Ni F. Structural resiliency of an EGF-like subdomain bound to its target protein, thrombin. Protein Science : a Publication of the Protein Society. 5: 195-203. PMID 8745396 DOI: 10.1002/Pro.5560050202 |
0.378 |
|
| 1996 |
Komives EA, Hunter MJ, Meininger DP, White LR, White CE. Structure/function of the fourth and fifth EGF domains of thrombomodulin Techniques in Protein Chemistry. 7: 391-400. DOI: 10.1016/S1080-8914(96)80043-3 |
0.423 |
|
| 1995 |
White CE, Hunter MJ, Meininger DP, White LR, Komives EA. Large-scale expression, purification and characterization of small fragments of thrombomodulin: the roles of the sixth domain and of methionine 388. Protein Engineering. 8: 1177-87. PMID 8819984 DOI: 10.1093/Protein/8.11.1177 |
0.37 |
|
| 1995 |
Hunter MJ, Komives EA. Thrombin-binding affinities of different disulfide-bonded isomers of the fifth EGF-like domain of thrombomodulin. Protein Science : a Publication of the Protein Society. 4: 2129-37. PMID 8535250 DOI: 10.1002/Pro.5560041019 |
0.392 |
|
| 1995 |
Meininger DP, Hunter MJ, Komives EA. Synthesis, activity, and preliminary structure of the fourth EGF-like domain of thrombomodulin. Protein Science : a Publication of the Protein Society. 4: 1683-95. PMID 8528067 DOI: 10.1002/Pro.5560040904 |
0.414 |
|
| 1995 |
Lougheed JC, Bowman CL, Meininger DP, Komives EA. Thrombin inhibition by cyclic peptides from thrombomodulin. Protein Science : a Publication of the Protein Society. 4: 773-80. PMID 7613475 DOI: 10.1002/Pro.5560040417 |
0.36 |
|
| 1995 |
Komives EA, Lougheed JC, Liu K, Sugio S, Zhang Z, Petsko GA, Ringe D. The structural basis for pseudoreversion of the E165D lesion by the secondary S96P mutation in triosephosphate isomerase depends on the positions of active site water molecules. Biochemistry. 34: 13612-21. PMID 7577950 DOI: 10.1021/Bi00041A041 |
0.341 |
|
| 1995 |
Blackmar C, Healy VL, Narendra U, Hrabal R, Feng NI, Komives EA. Structure/activity of the region of thrombomodulin that binds thrombin Bioorganic Chemistry. 23: 519-527. DOI: 10.1006/Bioo.1995.1037 |
0.404 |
|
| 1994 |
Zhang Z, Sugio S, Komives EA, Liu KD, Knowles JR, Petsko GA, Ringe D. Crystal structure of recombinant chicken triosephosphate isomerase-phosphoglycolohydroxamate complex at 1.8-A resolution. Biochemistry. 33: 2830-7. PMID 8130195 DOI: 10.1021/Bi00176A012 |
0.609 |
|
| 1994 |
Joseph-McCarthy D, Lolis E, Komives EA, Petsko GA. Crystal structure of the K12M/G15A triosephosphate isomerase double mutant and electrostatic analysis of the active site. Biochemistry. 33: 2815-23. PMID 8130194 DOI: 10.1021/Bi00176A010 |
0.361 |
|
| 1994 |
Lodi PJ, Chang LC, Knowles JR, Komives EA. Triosephosphate isomerase requires a positively charged active site: the role of lysine-12. Biochemistry. 33: 2809-14. PMID 8130193 DOI: 10.1021/Bi00176A009 |
0.586 |
|
| 1994 |
Fanuel L, Granier B, Wilkin JM, Bellefroid-Bourguignon C, Joris B, Knowles J, Komives E, Van Beeumen J, Ghuysen JM, Frère JM. The precursor of the Streptomyces R61 DD-peptidase containing a C-terminal extension is inactive. Febs Letters. 351: 49-52. PMID 8076692 DOI: 10.1016/0014-5793(94)00822-1 |
0.524 |
|
| 1994 |
Srinivasan J, Hu S, Hrabal R, Zhu Y, Komives EA, Ni F. Thrombin-bound structure of an EGF subdomain from human thrombomodulin determined by transferred nuclear Overhauser effects. Biochemistry. 33: 13553-60. PMID 7947766 DOI: 10.1021/Bi00250A007 |
0.41 |
|
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Komives EA, Ortiz de Montellano PR. Mechanism of oxidation of pi bonds by cytochrome P-450. Electronic requirements of the transition state in the turnover of phenylacetylenes. The Journal of Biological Chemistry. 262: 9793-802. PMID 3597438 |
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