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Nayun Kim, Ph.D. - Publications

Affiliations: 
2000 University of Chicago, Chicago, IL 
Area:
Molecular Biology
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Duy DL, Kim N. Yeast transcription factor Msn2 binds to G4 DNA. Nucleic Acids Research. PMID 37615577 DOI: 10.1093/nar/gkad684  0.345
2023 Escarcega RD, Patil AA, Moruno-Manchon JF, Urayama A, Marrelli SP, Kim N, Monchaud D, McCullough LD, Tsvetkov AS. Pirh2-dependent DNA damage in neurons induced by the G-quadruplex ligand pyridostatin. The Journal of Biological Chemistry. 105157. PMID 37579947 DOI: 10.1016/j.jbc.2023.105157  0.323
2022 Berroyer A, Bacolla A, Tainer JA, Kim N. Cleavage-defective Topoisomerase I mutants sharply increase G-quadruplex-associated genomic instability. Microbial Cell (Graz, Austria). 9: 52-68. PMID 35291312 DOI: 10.15698/mic2022.03.771  0.335
2021 Yadav P, Kim N, Kumari M, Verma S, Sharma TK, Yadav V, Kumar A. G-Quadruplex Structures in Bacteria - Biological Relevance and Potential as Antimicrobial Target. Journal of Bacteriology. PMID 33649149 DOI: 10.1128/JB.00577-20  0.333
2021 Stokdyk K, Berroyer A, Grami ZA, Kim N. The activity of yeast Apn2 AP endonuclease at uracil-derived AP sites is dependent on the major carbon source. Current Genetics. PMID 33386486 DOI: 10.1007/s00294-020-01141-4  0.362
2020 Singh S, Berroyer A, Kim M, Kim N. Yeast Nucleolin Nsr1 Impedes Replication and Elevates Genome Instability at an Actively Transcribed Guanine-Rich G4-DNA Forming Sequence. Genetics. PMID 33106247 DOI: 10.1534/genetics.120.303736  0.316
2020 Lejault P, Moruno-Manchon JF, Vemu SM, Honarpisheh P, Zhu L, Kim N, Urayama A, Monchaud D, McCullough LD, Tsvetkov AS. Regulation of autophagy by DNA G-quadruplexes. Autophagy. PMID 32420812 DOI: 10.1080/15548627.2020.1769991  0.4
2020 Berroyer A, Kim N. The Functional Consequences of Eukaryotic Topoisomerase 1 Interaction with G-Quadruplex DNA. Genes. 11. PMID 32059547 DOI: 10.3390/Genes11020193  0.441
2020 Moruno-Manchon JF, Lejault P, Wang Y, McCauley B, Honarpisheh P, Morales Scheihing DA, Singh S, Dang W, Kim N, Urayama A, Zhu L, Monchaud D, McCullough LD, Tsvetkov AS. Small-molecule G-quadruplex stabilizers reveal a novel pathway of autophagy regulation in neurons. Elife. 9. PMID 32043463 DOI: 10.7554/Elife.52283  0.407
2019 Klein HL, Bačinskaja G, Che J, Cheblal A, Elango R, Epshtein A, Fitzgerald DM, Gómez-González B, Khan SR, Kumar S, Leland BA, Marie L, Mei Q, Miné-Hattab J, Piotrowska A, ... ... Kim N, et al. Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways. Microbial Cell (Graz, Austria). 6: 1-64. PMID 30652105 DOI: 10.15698/Mic2019.01.664  0.354
2018 Owiti N, Stokdyk K, Kim N. The etiology of uracil residues in the Saccharomyces cerevisiae genomic DNA. Current Genetics. PMID 30328489 DOI: 10.1007/s00294-018-0895-8  0.37
2018 Owiti N, Wei S, Bhagwat A, Kim N. Unscheduled DNA synthesis leads to elevated uracil residues at highly transcribed genomic loci in Saccharomyces cerevisiae. Plos Genetics. 14: e1007516. PMID 30016327 DOI: 10.1371/Journal.Pgen.1007516  0.533
2017 Kim N. The interplay between G-quadruplex and Transcription. Current Medicinal Chemistry. PMID 29284393 DOI: 10.2174/0929867325666171229132619  0.341
2017 Moruno-Manchon JF, Koellhoffer EC, Gopakumar J, Hambarde S, Kim N, McCullough LD, Tsvetkov AS. The G-quadruplex DNA stabilizing drug pyridostatin promotes DNA damage and downregulates transcription of Brca1 in neurons. Aging. PMID 28904242 DOI: 10.18632/aging.101282  0.348
2017 Yadav V, Hemansi, Kim N, Tuteja N, Yadav P. G Quadruplex in Plants: A Ubiquitous Regulatory Element and Its Biological Relevance. Frontiers in Plant Science. 8: 1163. PMID 28725233 DOI: 10.3389/Fpls.2017.01163  0.355
2017 Kim N, Jinks-Robertson S. The Top1 paradox: Friend and foe of the eukaryotic genome. Dna Repair. PMID 28641942 DOI: 10.1016/J.Dnarep.2017.06.005  0.426
2017 Owiti N, Lopez C, Singh S, Stephenson A, Kim N. Def1 and Dst1 play distinct roles in repair of AP lesions in highly transcribed genomic regions. Dna Repair. 55: 31-39. PMID 28521214 DOI: 10.1016/J.Dnarep.2017.05.003  0.403
2017 Lopez CR, Singh S, Hambarde S, Griffin WC, Gao J, Chib S, Yu Y, Ira G, Raney KD, Kim N. Yeast Sub1 and human PC4 are G-quadruplex binding proteins that suppress genome instability at co-transcriptionally formed G4 DNA. Nucleic Acids Research. PMID 28369605 DOI: 10.1093/Nar/Gkx201  0.432
2015 Yadav P, Owiti N, Kim N. The role of topoisomerase I in suppressing genome instability associated with a highly transcribed guanine-rich sequence is not restricted to preventing RNA:DNA hybrid accumulation. Nucleic Acids Research. PMID 26527723 DOI: 10.1093/Nar/Gkv1152  0.424
2015 Cho JE, Kim N, Jinks-Robertson S. Topoisomerase 1-dependent deletions initiated by incision at ribonucleotides are biased to the non-transcribed strand of a highly activated reporter. Nucleic Acids Research. PMID 26271994 DOI: 10.1093/Nar/Gkv824  0.447
2015 Williams JD, Fleetwood S, Berroyer A, Kim N, Larson ED. Sites of instability in the human TCF3 (E2A) gene adopt G-quadruplex DNA structures in vitro. Frontiers in Genetics. 6: 177. PMID 26029241 DOI: 10.3389/Fgene.2015.00177  0.468
2014 Yadav P, Harcy V, Argueso JL, Dominska M, Jinks-Robertson S, Kim N. Topoisomerase I plays a critical role in suppressing genome instability at a highly transcribed G-quadruplex-forming sequence. Plos Genetics. 10: e1004839. PMID 25473964 DOI: 10.1371/Journal.Pgen.1004839  0.415
2013 Kim N, Cho JE, Li YC, Jinks-Robertson S. RNA∶DNA hybrids initiate quasi-palindrome-associated mutations in highly transcribed yeast DNA. Plos Genetics. 9: e1003924. PMID 24244191 DOI: 10.1371/Journal.Pgen.1003924  0.531
2013 Cho JE, Kim N, Li YC, Jinks-Robertson S. Two distinct mechanisms of Topoisomerase 1-dependent mutagenesis in yeast. Dna Repair. 12: 205-11. PMID 23305949 DOI: 10.1016/J.Dnarep.2012.12.004  0.478
2012 Kim N, Jinks-Robertson S. Transcription as a source of genome instability. Nature Reviews. Genetics. 13: 204-14. PMID 22330764 DOI: 10.1038/Nrg3152  0.407
2011 Kim N, Mudrak SV, Jinks-Robertson S. The dCMP transferase activity of yeast Rev1 is biologically relevant during the bypass of endogenously generated AP sites. Dna Repair. 10: 1262-71. PMID 22024240 DOI: 10.1016/J.Dnarep.2011.09.017  0.354
2011 Kim N, Jinks-Robertson S. Guanine repeat-containing sequences confer transcription-dependent instability in an orientation-specific manner in yeast. Dna Repair. 10: 953-60. PMID 21813340 DOI: 10.1016/J.Dnarep.2011.07.002  0.474
2011 Kim N, Huang SN, Williams JS, Li YC, Clark AB, Cho JE, Kunkel TA, Pommier Y, Jinks-Robertson S. Mutagenic processing of ribonucleotides in DNA by yeast topoisomerase I. Science (New York, N.Y.). 332: 1561-4. PMID 21700875 DOI: 10.1126/Science.1205016  0.413
2011 Lippert MJ, Kim N, Cho JE, Larson RP, Schoenly NE, O'Shea SH, Jinks-Robertson S. Role for topoisomerase 1 in transcription-associated mutagenesis in yeast. Proceedings of the National Academy of Sciences of the United States of America. 108: 698-703. PMID 21177427 DOI: 10.1073/Pnas.1012363108  0.533
2010 Kim N, Jinks-Robertson S. Abasic sites in the transcribed strand of yeast DNA are removed by transcription-coupled nucleotide excision repair. Molecular and Cellular Biology. 30: 3206-15. PMID 20421413 DOI: 10.1128/Mcb.00308-10  0.383
2009 Kim N, Jinks-Robertson S. dUTP incorporation into genomic DNA is linked to transcription in yeast. Nature. 459: 1150-3. PMID 19448611 DOI: 10.1038/Nature08033  0.512
2007 Kim N, Abdulovic AL, Gealy R, Lippert MJ, Jinks-Robertson S. Transcription-associated mutagenesis in yeast is directly proportional to the level of gene expression and influenced by the direction of DNA replication. Dna Repair. 6: 1285-96. PMID 17398168 DOI: 10.1016/J.Dnarep.2007.02.023  0.514
2006 Abdulovic A, Kim N, Jinks-Robertson S. Mutagenesis and the three R's in yeast. Dna Repair. 5: 409-21. PMID 16412705 DOI: 10.1016/J.Dnarep.2005.11.006  0.478
2003 Michael N, Shen HM, Longerich S, Kim N, Longacre A, Storb U. The E box motif CAGGTG enhances somatic hypermutation without enhancing transcription. Immunity. 19: 235-42. PMID 12932357 DOI: 10.1016/S1074-7613(03)00204-8  0.713
2003 Marini F, Kim N, Schuffert A, Wood RD. POLN, a nuclear PolA family DNA polymerase homologous to the DNA cross-link sensitivity protein Mus308 Journal of Biological Chemistry. 278: 32014-32019. PMID 12794064 DOI: 10.1074/Jbc.M305646200  0.484
2003 Kim N, Martin TE, Simon MC, Storb U. The transcription factor Spi-B is not required for somatic hypermutation. Molecular Immunology. 39: 577-83. PMID 12431391 DOI: 10.1016/S0161-5890(02)00201-8  0.685
2002 Michael N, Martin TE, Nicolae D, Kim N, Padjen K, Zhan P, Nguyen H, Pinkert C, Storb U. Effects of sequence and structure on the hypermutability of immunoglobulin genes. Immunity. 16: 123-34. PMID 11825571 DOI: 10.1016/S1074-7613(02)00261-3  0.713
2001 Storb U, Shen HM, Michael N, Kim N. Somatic hypermutation of immunoglobulin and non-immunoglobulin genes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 356: 13-9. PMID 11205325 DOI: 10.1098/Rstb.2000.0743  0.734
2000 Shen HM, Michael N, Kim N, Storb U. The TATA binding protein, c-Myc and survivin genes are not somatically hypermutated, while Ig and BCL6 genes are hypermutated in human memory B cells. International Immunology. 12: 1085-93. PMID 10882420 DOI: 10.1093/Intimm/12.7.1085  0.672
1999 Storb U, Peters A, Kim N, Shen HM, Bozek G, Michael N, Hackett J, Klotz E, Reynolds JD, Loeb LA, Martin TE. Molecular aspects of somatic hypermutation of immunoglobulin genes. Cold Spring Harbor Symposia On Quantitative Biology. 64: 227-34. PMID 11232290 DOI: 10.1101/Sqb.1999.64.227  0.613
1999 Kim N, Bozek G, Lo JC, Storb U. Different mismatch repair deficiencies all have the same effects on somatic hypermutation: intact primary mechanism accompanied by secondary modifications. The Journal of Experimental Medicine. 190: 21-30. PMID 10429667 DOI: 10.1084/Jem.190.1.21  0.716
1998 Storb U, Peters A, Klotz E, Kim N, Shen HM, Hackett J, Rogerson B, O'Brien R, Martin TE. Immunoglobulin transgenes as targets for somatic hypermutation. The International Journal of Developmental Biology. 42: 977-82. PMID 9853828 DOI: 10.1387/Ijdb.9853828  0.715
1998 Kim N, Storb U. The role of DNA repair in somatic hypermutation of immunoglobulin genes. The Journal of Experimental Medicine. 187: 1729-33. PMID 9607914 DOI: 10.1084/Jem.187.11.1729  0.639
1998 Storb U, Peters A, Klotz E, Kim N, Shen HM, Hackett J, Rogerson B, Martin TE. Cis-acting sequences that affect somatic hypermutation of Ig genes. Immunological Reviews. 162: 153-60. PMID 9602361 DOI: 10.1111/j.1600-065X.1998.tb01438.x  0.731
1998 Storb U, Peters A, Klotz E, Kim N, Shen HM, Kage K, Rogerson B, Martin TE. Somatic hypermutation of immunoglobulin genes is linked to transcription. Current Topics in Microbiology and Immunology. 229: 11-9. PMID 9479844 DOI: 10.1007/978-3-642-71984-4_2  0.672
1997 Kim N, Kage K, Matsuda F, Lefranc MP, Storb U. B lymphocytes of xeroderma pigmentosum or Cockayne syndrome patients with inherited defects in nucleotide excision repair are fully capable of somatic hypermutation of immunoglobulin genes. The Journal of Experimental Medicine. 186: 413-9. PMID 9236193 DOI: 10.1084/Jem.186.3.413  0.734
1996 Zent C, Kim N, Hiebert S, Zhang DE, Tenen DG, Rowley JD, Nucifora G. Rearrangement of the AML1/CBFA2 gene in myeloid leukemia with the 3;21 translocation: expression of co-existing multiple chimeric genes with similar functions as transcriptional repressors, but with opposite tumorigenic properties. Current Topics in Microbiology and Immunology. 211: 243-52. PMID 8585955 DOI: 10.1007/978-3-642-85232-9_24  0.429
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