John Aitchison - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 
Area:
Cell Biology, Bioinformatics Biology

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Jung S, Danziger SA, Panchaud A, von Haller P, Aitchison JD, Goodlett DR. Systematic Analysis of Yeast Proteome Reveals Peptide Detectability Factors for Mass Spectrometry. Journal of Proteomics & Bioinformatics. 8: 231-239. PMID 26962293 DOI: 10.4172/Jpb.1000374  0.651
2014 Carpp LN, Rogers RS, Moritz RL, Aitchison JD. Quantitative proteomic analysis of host-virus interactions reveals a role for Golgi brefeldin A resistance factor 1 (GBF1) in dengue infection. Molecular & Cellular Proteomics : McP. 13: 2836-54. PMID 24855065 DOI: 10.1074/mcp.M114.038984  0.313
2013 Jung S, Smith JJ, von Haller PD, Dilworth DJ, Sitko KA, Miller LR, Saleem RA, Goodlett DR, Aitchison JD. Global analysis of condition-specific subcellular protein distribution and abundance. Molecular & Cellular Proteomics : McP. 12: 1421-35. PMID 23349476 DOI: 10.1074/Mcp.O112.019166  0.671
2012 Swearingen KE, Hoopmann MR, Johnson RS, Saleem RA, Aitchison JD, Moritz RL. Nanospray FAIMS fractionation provides significant increases in proteome coverage of unfractionated complex protein digests. Molecular & Cellular Proteomics : McP. 11: M111.014985. PMID 22186714 DOI: 10.1074/Mcp.M111.014985  0.31
2011 Tower RJ, Fagarasanu A, Aitchison JD, Rachubinski RA. The peroxin Pex34p functions with the Pex11 family of peroxisomal divisional proteins to regulate the peroxisome population in yeast. Molecular Biology of the Cell. 22: 1727-38. PMID 21441307 DOI: 10.1091/mbc.E11-01-0084  0.35
2011 Panchaud A, Jung S, Shaffer SA, Aitchison JD, Goodlett DR. Faster, quantitative, and accurate precursor acquisition independent from ion count. Analytical Chemistry. 83: 2250-7. PMID 21341720 DOI: 10.1021/Ac103079Q  0.645
2010 Vinh DB, Ko DC, Rachubinski RA, Aitchison JD, Miller SI. Expression of the Salmonella spp. virulence factor SifA in yeast alters Rho1 activity on peroxisomes. Molecular Biology of the Cell. 21: 3567-77. PMID 20739463 DOI: 10.1091/Mbc.E10-06-0482  0.301
2010 Jung S, Marelli M, Rachubinski RA, Goodlett DR, Aitchison JD. Dynamic changes in the subcellular distribution of Gpd1p in response to cell stress. The Journal of Biological Chemistry. 285: 6739-49. PMID 20026609 DOI: 10.1074/Jbc.M109.058552  0.601
2009 Smith JJ, Aitchison JD. Regulation of peroxisome dynamics. Current Opinion in Cell Biology. 21: 119-26. PMID 19188056 DOI: 10.1016/j.ceb.2009.01.009  0.31
2008 Marelli M, Nesvizhskii AI, Aitchison JD. Identifying bona fide components of an organelle by isotope-coded labeling of subcellular fractions : an example in peroxisomes. Methods in Molecular Biology (Clifton, N.J.). 432: 357-71. PMID 18370030 DOI: 10.1007/978-1-59745-028-7_24  0.374
2006 Pedrioli PG, Raught B, Zhang XD, Rogers R, Aitchison J, Matunis M, Aebersold R. Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software. Nature Methods. 3: 533-9. PMID 16791211 DOI: 10.1038/Nmeth891  0.36
2006 Vizeacoumar FJ, Vreden WN, Aitchison JD, Rachubinski RA. Pex19p binds Pex30p and Pex32p at regions required for their peroxisomal localization but separate from their peroxisomal targeting signals. The Journal of Biological Chemistry. 281: 14805-12. PMID 16551610 DOI: 10.1074/jbc.M601808200  0.325
2006 Vizeacoumar FJ, Vreden WN, Fagarasanu M, Eitzen GA, Aitchison JD, Rachubinski RA. The dynamin-like protein Vps1p of the yeast Saccharomyces cerevisiae associates with peroxisomes in a Pex19p-dependent manner. The Journal of Biological Chemistry. 281: 12817-23. PMID 16520372 DOI: 10.1074/jbc.M600365200  0.372
2005 Hwang D, Smith JJ, Leslie DM, Weston AD, Rust AG, Ramsey S, de Atauri P, Siegel AF, Bolouri H, Aitchison JD, Hood L. A data integration methodology for systems biology: experimental verification. Proceedings of the National Academy of Sciences of the United States of America. 102: 17302-7. PMID 16301536 DOI: 10.1073/Pnas.0508649102  0.306
2004 Marelli M, Smith JJ, Jung S, Yi E, Nesvizhskii AI, Christmas RH, Saleem RA, Tam YY, Fagarasanu A, Goodlett DR, Aebersold R, Rachubinski RA, Aitchison JD. Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane. The Journal of Cell Biology. 167: 1099-112. PMID 15596542 DOI: 10.1083/Jcb.200404119  0.662
2003 Tam YY, Torres-Guzman JC, Vizeacoumar FJ, Smith JJ, Marelli M, Aitchison JD, Rachubinski RA. Pex11-related proteins in peroxisome dynamics: a role for the novel peroxin Pex27p in controlling peroxisome size and number in Saccharomyces cerevisiae. Molecular Biology of the Cell. 14: 4089-102. PMID 14517321 DOI: 10.1091/Mbc.E03-03-0150  0.305
2003 Sydorskyy Y, Dilworth DJ, Yi EC, Goodlett DR, Wozniak RW, Aitchison JD. Intersection of the Kap123p-mediated nuclear import and ribosome export pathways Molecular and Cellular Biology. 23: 2042-2054. PMID 12612077 DOI: 10.1128/MCB.23.6.2042-2054.2003  0.486
2002 Yi EC, Marelli M, Lee H, Purvine SO, Aebersold R, Aitchison JD, Goodlett DR. Approaching complete peroxisome characterization by gas-phase fractionation. Electrophoresis. 23: 3205-16. PMID 12298092 DOI: 10.1002/1522-2683(200209)23:18<3205::Aid-Elps3205>3.0.Co;2-Y  0.51
2001 Iouk TL, Aitchison JD, Maguire S, Wozniak RW. Rrb1p, a yeast nuclear WD-repeat protein involved in the regulation of ribosome biosynthesis. Molecular and Cellular Biology. 21: 1260-71. PMID 11158312 DOI: 10.1128/MCB.21.4.1260-1271.2001  0.3
1995 Eitzen GA, Aitchison JD, Szilard RK, Veenhuis M, Nuttley WM, Rachubinski RA. The Yarrowia lipolytica gene PAY2 encodes a 42-kDa peroxisomal integral membrane protein essential for matrix protein import and peroxisome enlargement but not for peroxisome membrane proliferation. The Journal of Biological Chemistry. 270: 1429-36. PMID 7836411 DOI: 10.1074/Jbc.270.3.1429  0.329
1992 Aitchison JD, Nuttley WM, Szilard RK, Brade AM, Glover JR, Rachubinski RA. Peroxisome biogenesis in yeast. Molecular Microbiology. 6: 3455-60. PMID 1474890 DOI: 10.1111/J.1365-2958.1992.Tb01780.X  0.371
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