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Rhonald C. Lua, Ph.D. - Publications

Affiliations: 
2005 University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Condensed Matter Physics, General Biophysics
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17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Lua RC, Wilson SJ, Konecki DM, Wilkins AD, Venner E, Morgan DH, Lichtarge O. UET: a database of evolutionarily-predicted functional determinants of protein sequences that cluster as functional sites in protein structures. Nucleic Acids Research. PMID 26590254 DOI: 10.1093/Nar/Gkv1279  0.331
2014 Lua RC, Marciano DC, Katsonis P, Adikesavan AK, Wilkins AD, Lichtarge O. Prediction and redesign of protein-protein interactions. Progress in Biophysics and Molecular Biology. 116: 194-202. PMID 24878423 DOI: 10.1016/J.Pbiomolbio.2014.05.004  0.324
2013 Amin SR, Erdin S, Ward RM, Lua RC, Lichtarge O. Prediction and experimental validation of enzyme substrate specificity in protein structures. Proceedings of the National Academy of Sciences of the United States of America. 110: E4195-202. PMID 24145433 DOI: 10.1073/Pnas.1305162110  0.301
2013 Wilkins AD, Venner E, Marciano DC, Erdin S, Atri B, Lua RC, Lichtarge O. Accounting for epistatic interactions improves the functional analysis of protein structures. Bioinformatics (Oxford, England). 29: 2714-21. PMID 24021383 DOI: 10.1093/Bioinformatics/Btt489  0.318
2012 Bachman BJ, Venner E, Lua RC, Erdin S, Lichtarge O. ETAscape: analyzing protein networks to predict enzymatic function and substrates in Cytoscape. Bioinformatics (Oxford, England). 28: 2186-8. PMID 22689386 DOI: 10.1093/Bioinformatics/Bts331  0.306
2012 Lua RC. PyKnot: a PyMOL tool for the discovery and analysis of knots in proteins. Bioinformatics (Oxford, England). 28: 2069-71. PMID 22611132 DOI: 10.1093/Bioinformatics/Bts299  0.305
2012 Wilkins A, Erdin S, Lua R, Lichtarge O. Evolutionary trace for prediction and redesign of protein functional sites. Methods in Molecular Biology (Clifton, N.J.). 819: 29-42. PMID 22183528 DOI: 10.1007/978-1-61779-465-0_3  0.334
2010 Lua RC, Lichtarge O. PyETV: a PyMOL evolutionary trace viewer to analyze functional site predictions in protein complexes. Bioinformatics (Oxford, England). 26: 2981-2. PMID 20929911 DOI: 10.1093/Bioinformatics/Btq566  0.31
2010 Wilkins AD, Lua R, Erdin S, Ward RM, Lichtarge O. Sequence and structure continuity of evolutionary importance improves protein functional site discovery and annotation Protein Science. 19: 1296-1311. PMID 20506260 DOI: 10.1002/Pro.406  0.334
2006 Lua RC, Grosberg AY. Statistics of knots, geometry of conformations, and evolution of proteins Plos Computational Biology. 2: 350-357. PMID 16710448 DOI: 10.1371/Journal.Pcbi.0020045  0.54
2005 Lua RC, Grosberg AY. Practical applicability of the Jarzynski relation in statistical mechanics: a pedagogical example. The Journal of Physical Chemistry. B. 109: 6805-11. PMID 16851766 DOI: 10.1021/Jp0455428  0.523
2005 Lua RC, Grosberg AY. First passage times and asymmetry of DNA translocation. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 061918. PMID 16485985 DOI: 10.1103/Physreve.72.061918  0.513
2005 Lua RC, Grosberg AY. First passage times and asymmetry of DNA translocation Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 72. DOI: 10.1103/PhysRevE.72.061918  0.425
2005 Lua RC, Grosberg AY. Practical applicability of the jarzynski relation in statistical mechanics: A pedagogical example Journal of Physical Chemistry B. 109: 6805-6811. DOI: 10.1021/jp0455428  0.438
2004 Moore NT, Lua RC, Grosberg AY. Topologically driven swelling of a polymer loop. Proceedings of the National Academy of Sciences of the United States of America. 101: 13431-5. PMID 15340137 DOI: 10.1073/Pnas.0403383101  0.647
2004 Moore NT, Lua RC, Grosberg AY. Topologically driven swelling of a polymer loop Proceedings of the National Academy of Sciences of the United States of America. 101: 13431-13435. DOI: 10.1073/pnas.0403383101  0.627
2004 Lua R, Borovinskiy AL, Grosberg AY. Fractal and statistical properties of large compact polymers: A computational study Polymer. 45: 717-731. DOI: 10.1016/J.Polymer.2003.10.073  0.583
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