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Daniel Almonacid - Publications

Affiliations: 
2004-2007 Chemistry University of Cambridge, Cambridge, England, United Kingdom 
 2007-2012 Bioengineering and Therapeutic Sciences University of California, San Francisco, San Francisco, CA 
 2012- Ciencias Biológicas Universidad Andrés Bello, Santiago, Región Metropolitana, Chile 
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10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Rubat S, Varas I, Sepúlveda R, Almonacid D, González-Nilo F, Agosin E. Increasing the intracellular isoprenoid pool in Saccharomyces cerevisiae by structural fine-tuning of a bifunctional farnesyl diphosphate synthase. Fems Yeast Research. 17. PMID 28854674 DOI: 10.1093/Femsyr/Fox032  0.34
2014 Akiva E, Brown S, Almonacid DE, Barber AE, Custer AF, Hicks MA, Huang CC, Lauck F, Mashiyama ST, Meng EC, Mischel D, Morris JH, Ojha S, Schnoes AM, Stryke D, et al. The Structure-Function Linkage Database. Nucleic Acids Research. 42: D521-30. PMID 24271399 DOI: 10.1093/Nar/Gkt1130  0.664
2013 Wallrapp FH, Pan JJ, Ramamoorthy G, Almonacid DE, Hillerich BS, Seidel R, Patskovsky Y, Babbitt PC, Almo SC, Jacobson MP, Poulter CD. Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily. Proceedings of the National Academy of Sciences of the United States of America. 110: E1196-202. PMID 23493556 DOI: 10.1073/Pnas.1300632110  0.363
2012 Holliday GL, Andreini C, Fischer JD, Rahman SA, Almonacid DE, Williams ST, Pearson WR. MACiE: exploring the diversity of biochemical reactions. Nucleic Acids Research. 40: D783-9. PMID 22058127 DOI: 10.1093/Nar/Gkr799  0.771
2011 Almonacid DE, Babbitt PC. Toward mechanistic classification of enzyme functions. Current Opinion in Chemical Biology. 15: 435-42. PMID 21489855 DOI: 10.1016/J.Cbpa.2011.03.008  0.644
2010 Almonacid DE, Yera ER, Mitchell JB, Babbitt PC. Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function. Plos Computational Biology. 6: e1000700. PMID 20300652 DOI: 10.1371/Journal.Pcbi.1000700  0.763
2007 Holliday GL, Almonacid DE, Mitchell JB, Thornton JM. The chemistry of protein catalysis. Journal of Molecular Biology. 372: 1261-77. PMID 17727879 DOI: 10.1016/J.Jmb.2007.07.034  0.772
2007 O'Boyle NM, Holliday GL, Almonacid DE, Mitchell JB. Using reaction mechanism to measure enzyme similarity. Journal of Molecular Biology. 368: 1484-99. PMID 17400244 DOI: 10.1016/j.jmb.2007.02.065  0.725
2007 Holliday GL, Almonacid DE, Bartlett GJ, O'Boyle NM, Torrance JW, Murray-Rust P, Mitchell JB, Thornton JM. MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms. Nucleic Acids Research. 35: D515-20. PMID 17082206 DOI: 10.1093/Nar/Gkl774  0.711
2005 Holliday GL, Bartlett GJ, Almonacid DE, O'Boyle NM, Murray-Rust P, Thornton JM, Mitchell JB. MACiE: a database of enzyme reaction mechanisms. Bioinformatics (Oxford, England). 21: 4315-6. PMID 16188925 DOI: 10.1093/Bioinformatics/Bti693  0.717
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