Year |
Citation |
Score |
2024 |
Tian L, Li Y, Shi Y. Dark and Dronc activation in . Proceedings of the National Academy of Sciences of the United States of America. 121: e2312784121. PMID 38381783 DOI: 10.1073/pnas.2312784121 |
0.324 |
|
2020 |
Thomas C, Aller SG, Beis K, Carpenter EP, Chang G, Chen L, Dassa E, Dean M, Duong Van Hoa F, Ekiert D, Ford R, Gaudet R, Gong X, Holland IB, Huang Y, ... ... Shi Y, et al. Structural and functional diversity calls for a new classification of ABC transporters. Febs Letters. PMID 32978974 DOI: 10.1002/1873-3468.13935 |
0.634 |
|
2020 |
Huang G, Zhang Y, Zhu X, Zeng C, Wang Q, Zhou Q, Tao Q, Liu M, Lei J, Yan C, Shi Y. Structure of the cytoplasmic ring of the Xenopus laevis nuclear pore complex by cryo-electron microscopy single particle analysis. Cell Research. PMID 32376910 DOI: 10.1038/S41422-020-0319-4 |
0.318 |
|
2020 |
Zhang Y, Li S, Zeng C, Huang G, Zhu X, Wang Q, Wang K, Zhou Q, Yan C, Zhang W, Yang G, Liu M, Tao Q, Lei J, Shi Y. Molecular architecture of the luminal ring of the Xenopus laevis nuclear pore complex. Cell Research. PMID 32367042 DOI: 10.1038/S41422-020-0320-Y |
0.365 |
|
2019 |
Wan R, Bai R, Shi Y. Molecular choreography of pre-mRNA splicing by the spliceosome. Current Opinion in Structural Biology. 59: 124-133. PMID 31476650 DOI: 10.1016/J.Sbi.2019.07.010 |
0.337 |
|
2019 |
Wan R, Bai R, Yan C, Lei J, Shi Y. Structures of the Catalytically Activated Yeast Spliceosome Reveal the Mechanism of Branching. Cell. PMID 30879786 DOI: 10.1016/j.cell.2019.02.006 |
0.358 |
|
2019 |
Zhang X, Zhan X, Yan C, Zhang W, Liu D, Lei J, Shi Y. Structures of the human spliceosomes before and after release of the ligated exon. Cell Research. PMID 30728453 DOI: 10.1038/s41422-019-0143-x |
0.321 |
|
2019 |
Yan C, Wan R, Shi Y. Molecular Mechanisms of pre-mRNA Splicing through Structural Biology of the Spliceosome. Cold Spring Harbor Perspectives in Biology. 11. PMID 30602541 DOI: 10.1101/Cshperspect.A032409 |
0.31 |
|
2019 |
Zhou R, Yang G, Guo X, Zhou Q, Lei J, Shi Y. Recognition of the amyloid precursor protein by human gamma-secretase. Science. 363. DOI: 10.2210/Pdb6Iyc/Pdb |
0.321 |
|
2019 |
Bai R, Wan R, Yan C, Lei J, Shi Y. Structures of the fully assembledSaccharomyces cerevisiaespliceosome before activation Science. 360: 1423-1429. DOI: 10.2210/Pdb5Zwo/Pdb |
0.357 |
|
2018 |
Wu S, Song W, Wong CCL, Shi Y. Bax inhibitor 1 is a γ-secretase-independent presenilin-binding protein. Proceedings of the National Academy of Sciences of the United States of America. PMID 30559186 DOI: 10.1073/Pnas.1810870116 |
0.356 |
|
2018 |
Su Q, Hu F, Ge X, Lei J, Yu S, Wang T, Zhou Q, Mei C, Shi Y. Structure of the human PKD1/PKD2 complex. Science (New York, N.Y.). PMID 30093605 DOI: 10.2210/Pdb6A70/Pdb |
0.352 |
|
2018 |
Yang SF, Sun AA, Shi Y, Li F, Pickett HA. Structural and functional characterization of the RBBP4-ZNF827 interaction and its role in NuRD recruitment to telomeres. The Biochemical Journal. PMID 30045876 DOI: 10.1042/Bcj20180310 |
0.325 |
|
2018 |
Bai R, Wan R, Yan C, Lei J, Shi Y. Structures of the fully assembled spliceosome before activation. Science (New York, N.Y.). PMID 29794219 DOI: 10.1126/Science.Aau0325 |
0.309 |
|
2018 |
Zhang X, Wang Q, Wu J, Wang J, Shi Y, Liu M. Crystal structure of human lysyl oxidase-like 2 (hLOXL2) in a precursor state. Proceedings of the National Academy of Sciences of the United States of America. PMID 29581294 DOI: 10.1073/Pnas.1720859115 |
0.395 |
|
2018 |
Zhang X, Yan C, Zhan X, Li L, Lei J, Shi Y. Structure of the human activated spliceosome in three conformational states. Cell Research. PMID 29360106 DOI: 10.1038/cr.2018.14 |
0.331 |
|
2018 |
Zhan X, Yan C, Zhang X, Lei J, Shi Y. Structure of a human catalytic step I spliceosome. Science (New York, N.Y.). PMID 29301961 DOI: 10.1126/Science.Aar6401 |
0.337 |
|
2018 |
Yang G, Zhou R, Zhou Q, Guo X, Yan C, Ke M, Lei J, Shi Y. Structural basis of Notch recognition by human gamma-secretase Nature. 565: 192-197. DOI: 10.2210/Pdb6Idf/Pdb |
0.374 |
|
2017 |
Bai R, Yan C, Wan R, Lei J, Shi Y. Structure of the Post-catalytic Spliceosome from Saccharomyces cerevisiae. Cell. PMID 29153833 DOI: 10.1016/J.Cell.2017.10.038 |
0.332 |
|
2017 |
Zhou R, Yang G, Shi Y. Dominant negative effect of the loss-of-function γ-secretase mutants on the wild-type enzyme through heterooligomerization. Proceedings of the National Academy of Sciences of the United States of America. PMID 29078389 DOI: 10.1073/Pnas.1713605114 |
0.315 |
|
2017 |
Shi Y. Mechanistic insights into precursor messenger RNA splicing by the spliceosome. Nature Reviews. Molecular Cell Biology. PMID 28951565 DOI: 10.1038/Nrm.2017.86 |
0.321 |
|
2017 |
Wan R, Yan C, Bai R, Lei J, Shi Y. Structure of an Intron Lariat Spliceosome from Saccharomyces cerevisiae. Cell. PMID 28919079 DOI: 10.1016/J.Cell.2017.08.029 |
0.375 |
|
2017 |
Shi Y. The Spliceosome: A Protein-directed Metalloribozyme. Journal of Molecular Biology. PMID 28733144 DOI: 10.1016/J.Jmb.2017.07.010 |
0.33 |
|
2017 |
Yang G, Zhou R, Shi Y. Cryo-EM structures of human γ-secretase. Current Opinion in Structural Biology. 46: 55-64. PMID 28628788 DOI: 10.1016/J.Sbi.2017.05.013 |
0.318 |
|
2017 |
Zhang X, Yan C, Hang J, Finci LI, Lei J, Shi Y. An Atomic Structure of the Human Spliceosome. Cell. PMID 28502770 DOI: 10.1016/J.Cell.2017.04.033 |
0.804 |
|
2017 |
Li Y, Zhou M, Hu Q, Bai XC, Huang W, Scheres SH, Shi Y. Mechanistic insights into caspase-9 activation by the structure of the apoptosome holoenzyme. Proceedings of the National Academy of Sciences of the United States of America. PMID 28143931 DOI: 10.1073/Pnas.1620626114 |
0.773 |
|
2017 |
Zhou R, Shi Y, Yang G. Expression, Purification, and Enzymatic Characterization of Intramembrane Proteases. Methods in Enzymology. 584: 127-155. PMID 28065261 DOI: 10.1016/Bs.Mie.2016.09.046 |
0.35 |
|
2016 |
Yan C, Wan R, Bai R, Huang G, Shi Y. Structure of a yeast step II catalytically activated spliceosome. Science (New York, N.Y.). PMID 27980089 DOI: 10.1126/Science.Aak9979 |
0.36 |
|
2016 |
Wan R, Yan C, Bai R, Huang G, Shi Y. Structure of a yeast catalytic step I spliceosome at 3.4 Å resolution. Science (New York, N.Y.). PMID 27445308 DOI: 10.1126/Science.Aag2235 |
0.347 |
|
2016 |
Yan C, Wan R, Bai R, Huang G, Shi Y. Structure of a yeast catalytically activated spliceosome at 3.5 Å resolution. Science (New York, N.Y.). PMID 27445306 DOI: 10.1126/Science.Aag0291 |
0.353 |
|
2016 |
Huang X, Luan B, Wu J, Shi Y. An atomic structure of the human 26S proteasome. Nature Structural & Molecular Biology. PMID 27428775 DOI: 10.1038/Nsmb.3273 |
0.629 |
|
2016 |
Bao H, Li F, Wang C, Wang N, Jiang Y, Tang Y, Wu J, Shi Y. Structural Basis for the Specific Recognition of RhoA by the Dual GTPase-activating Protein ARAP3. The Journal of Biological Chemistry. PMID 27311713 DOI: 10.1074/Jbc.M116.736140 |
0.318 |
|
2016 |
Xue S, Wang J, Zhang X, Shi Y, Li B, Bao Q, Pang W, Ai D, Zhu Y, He J. Endothelial ATP-binding cassette G1 in mouse endothelium protects against hemodynamic-induced atherosclerosis. Biochemical and Biophysical Research Communications. PMID 27297110 DOI: 10.1016/j.bbrc.2016.06.050 |
0.457 |
|
2016 |
Gong X, Qian H, Zhou X, Wu J, Wan T, Cao P, Huang W, Zhao X, Wang X, Wang P, Shi Y, Gao GF, Zhou Q, Yan N. Structural Insights into the Niemann-Pick C1 (NPC1)-Mediated Cholesterol Transfer and Ebola Infection. Cell. PMID 27238017 DOI: 10.1016/J.Cell.2016.05.022 |
0.604 |
|
2016 |
Luan B, Huang X, Wu J, Mei Z, Wang Y, Xue X, Yan C, Wang J, Finley DJ, Shi Y, Wang F. Structure of an endogenous yeast 26S proteasome reveals two major conformational states. Proceedings of the National Academy of Sciences of the United States of America. PMID 26929360 DOI: 10.1073/Pnas.1601561113 |
0.638 |
|
2016 |
Zhang Z, Hu F, Liu Y, Ma B, Chen X, Zhu K, Shi Y, Wei T, Xing Y, Gao Y, Lu H, Liu Y, Kang Q. Activation of type 5 metabotropic glutamate receptor promotes the proliferation of rat retinal progenitor cell via activation of the PI-3-K and MAPK signaling pathways. Neuroscience. PMID 26902516 DOI: 10.1016/J.Neuroscience.2016.02.030 |
0.426 |
|
2016 |
Zheng W, Men H, Li J, Xing Y, Wu B, Wang Z, Li J, Teng D, Shi Y, Li J, Jiang P, Cai J. Global MicroRNA Expression Profiling of Mouse Livers following Ischemia-Reperfusion Injury at Different Stages. Plos One. 11: e0148677. PMID 26859886 DOI: 10.1371/journal.pone.0148677 |
0.347 |
|
2016 |
Jiang T, Liu M, Wu J, Shi Y. Structural and biochemical analysis of Bcl-2 interaction with the hepatitis B virus protein HBx. Proceedings of the National Academy of Sciences of the United States of America. PMID 26858413 DOI: 10.1073/Pnas.1525616113 |
0.423 |
|
2016 |
Sun L, Li X, Shi Y. Structural biology of intramembrane proteases: mechanistic insights from rhomboid and S2P to γ-secretase. Current Opinion in Structural Biology. 37: 97-107. PMID 26811996 DOI: 10.1016/J.Sbi.2015.12.008 |
0.548 |
|
2016 |
Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, ... Shi Y, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 12: 1-222. PMID 26799652 DOI: 10.1080/15548627.2015.1100356 |
0.529 |
|
2016 |
Wan R, Yan C, Bai R, Wang L, Huang M, Wong CC, Shi Y. The 3.8 Å structure of the U4/U6.U5 tri-snRNP: Insights into spliceosome assembly and catalysis. Science (New York, N.Y.). PMID 26743623 DOI: 10.1126/Science.Aad6466 |
0.305 |
|
2016 |
Yan X, Shi Y, Kou B, Zhu Z, Chai J, Chen D, Guo H. [Keratin 18 phosphorylation increases autophagy of colorectal cancer HCT116 cells and enhanced its sensitivity to oxaliplatin]. Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi = Chinese Journal of Cellular and Molecular Immunology. 32: 34-8. PMID 26728375 |
0.427 |
|
2016 |
Yan C, Wan R, Bai R, Huang G, Shi Y. Structure of a yeast activated spliceosome at 3.5 angstrom resolution Science. 353: 904-911. DOI: 10.2210/Pdb5Gm6/Pdb |
0.363 |
|
2015 |
Bai XC, Rajendra E, Yang G, Shi Y, Scheres SH. Sampling the conformational space of the catalytic subunit of human γ-secretase. Elife. 4. PMID 26623517 DOI: 10.7554/Elife.11182 |
0.392 |
|
2015 |
Zhou M, Li Y, Hu Q, Bai XC, Huang W, Yan C, Scheres SH, Shi Y. Atomic structure of the apoptosome: mechanism of cytochrome c- and dATP-mediated activation of Apaf-1. Genes & Development. PMID 26543158 DOI: 10.1101/Gad.272278.115 |
0.764 |
|
2015 |
Yan C, Hang J, Wan R, Huang M, Wong CC, Shi Y. Structure of a yeast spliceosome at 3.6-angstrom resolution. Science (New York, N.Y.). 349: 1182-91. PMID 26292707 DOI: 10.1126/Science.Aac7629 |
0.323 |
|
2015 |
Hang J, Wan R, Yan C, Shi Y. Structural basis of pre-mRNA splicing. Science (New York, N.Y.). 349: 1191-8. PMID 26292705 DOI: 10.1126/Science.Aac8159 |
0.306 |
|
2015 |
Bai XC, Yan C, Yang G, Lu P, Ma D, Sun L, Zhou R, Scheres SH, Shi Y. An atomic structure of human γ-secretase. Nature. 525: 212-7. PMID 26280335 DOI: 10.1038/Nature14892 |
0.732 |
|
2015 |
Li C, Li Y, Xing Y, Zhang Z, Zhang X, Li Z, Shi Y, Ma T, Ma R, Wang K, Wei J. Perovskite Solar Cell Using a Two-Dimensional Titania Nanosheet Thin Film as the Compact Layer. Acs Applied Materials & Interfaces. 7: 15117-22. PMID 26158908 DOI: 10.1021/acsami.5b01959 |
0.339 |
|
2015 |
Chai J, Chen P, Feng R, Liang H, Shen X, Tong G, Cheng J, Li K, Xie S, Shi Y, Wang D. Life events and chronic physical conditions among left-behind farmers in rural China a cross-sectional study. Bmc Public Health. 15: 594. PMID 26130045 DOI: 10.1186/s12889-015-1877-0 |
0.356 |
|
2015 |
Sun L, Zhao L, Yang G, Yan C, Zhou R, Zhou X, Xie T, Zhao Y, Wu S, Li X, Shi Y. Structural basis of human γ-secretase assembly. Proceedings of the National Academy of Sciences of the United States of America. 112: 6003-8. PMID 25918421 DOI: 10.1073/Pnas.1506242112 |
0.395 |
|
2015 |
Chai J, Shen X, Feng R, Cheng J, Chen Y, Zha Z, Jia S, Liang H, Zhao T, Sha R, Shi Y, Li K, Wang D. eCROPS-CA: a systematic approach toward effective and sustainable cancer prevention in rural China. Bmc Cancer. 15: 233. PMID 25886568 DOI: 10.1186/s12885-015-1253-6 |
0.371 |
|
2015 |
Dang S, Wu S, Wang J, Li H, Huang M, He W, Li YM, Wong CC, Shi Y. Cleavage of amyloid precursor protein by an archaeal presenilin homologue PSH. Proceedings of the National Academy of Sciences of the United States of America. 112: 3344-9. PMID 25733893 DOI: 10.1073/Pnas.1502150112 |
0.318 |
|
2015 |
Pang Y, Bai XC, Yan C, Hao Q, Chen Z, Wang JW, Scheres SH, Shi Y. Structure of the apoptosome: mechanistic insights into activation of an initiator caspase from Drosophila. Genes & Development. 29: 277-87. PMID 25644603 DOI: 10.1101/Gad.255877.114 |
0.467 |
|
2015 |
Shen X, Li K, Chen P, Feng R, Liang H, Tong G, Chen J, Chai J, Shi Y, Xie S, Wang D. Associations of blood pressure with common factors among left-behind farmers in rural China: a cross-sectional study using quantile regression analysis. Medicine. 94: e142. PMID 25590833 DOI: 10.1097/MD.0000000000000142 |
0.362 |
|
2015 |
Yan Z, Bai XC, Yan C, Wu J, Li Z, Xie T, Peng W, Yin CC, Li X, Scheres SH, Shi Y, Yan N. Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution. Nature. 517: 50-5. PMID 25517095 DOI: 10.1038/Nature14063 |
0.636 |
|
2015 |
Liang H, Cheng J, Shen X, Chen P, Tong G, Chai J, Li K, Xie S, Shi Y, Wang D, Sun Y. Relationships between stressful life events and impaired fasting glucose among left-behind farmers in rural China. Journal of Psychosomatic Research. 78: 178-83. PMID 25477301 DOI: 10.1016/j.jpsychores.2014.10.009 |
0.346 |
|
2014 |
Zhou H, Shi Y, Dong Q, Zhang H, Xing Y, Wang K, Du Y, Ma T. Hole-Conductor-Free, Metal-Electrode-Free TiO2/CH3NH3PbI3 Heterojunction Solar Cells Based on a Low-Temperature Carbon Electrode. The Journal of Physical Chemistry Letters. 5: 3241-6. PMID 26276339 DOI: 10.1021/jz5017069 |
0.355 |
|
2014 |
Shen XR, Chai J, Feng R, Liu TZ, Tong GX, Cheng J, Li KC, Xie SY, Shi Y, Wang DB. Refining and validating a two-stage and web-based cancer risk assessment tool for village doctors in China. Asian Pacific Journal of Cancer Prevention : Apjcp. 15: 10683-90. PMID 25605159 DOI: 10.7314/APJCP.2014.15.24.10683 |
0.382 |
|
2014 |
Hu Q, Wu D, Chen W, Yan Z, Yan C, He T, Liang Q, Shi Y. Molecular determinants of caspase-9 activation by the Apaf-1 apoptosome. Proceedings of the National Academy of Sciences of the United States of America. 111: 16254-61. PMID 25313070 DOI: 10.1073/Pnas.1418000111 |
0.421 |
|
2014 |
Guo R, Zheng L, Park JW, Lv R, Chen H, Jiao F, Xu W, Mu S, Wen H, Qiu J, Wang Z, Yang P, Wu F, Hui J, Fu X, ... Shi YG, ... Shi Y, et al. BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing. Molecular Cell. 56: 298-310. PMID 25263594 DOI: 10.1016/J.Molcel.2014.08.022 |
0.431 |
|
2014 |
Wang K, Shi Y, Zhang H, Xing Y, Dong Q, Ma T. Selenium as a photoabsorber for inorganic-organic hybrid solar cells. Physical Chemistry Chemical Physics : Pccp. 16: 23316-9. PMID 25259378 DOI: 10.1039/c4cp02821j |
0.368 |
|
2014 |
Xie T, Yan C, Zhou R, Zhao Y, Sun L, Yang G, Lu P, Ma D, Shi Y. Crystal structure of the γ-secretase component nicastrin. Proceedings of the National Academy of Sciences of the United States of America. 111: 13349-54. PMID 25197054 DOI: 10.1073/Pnas.1414837111 |
0.734 |
|
2014 |
Lu P, Bai XC, Ma D, Xie T, Yan C, Sun L, Yang G, Zhao Y, Zhou R, Scheres SH, Shi Y. Three-dimensional structure of human γ-secretase. Nature. 512: 166-70. PMID 25043039 DOI: 10.1038/Nature13567 |
0.737 |
|
2014 |
Zhang H, Shi Y, Yan F, Wang L, Wang K, Xing Y, Dong Q, Ma T. A dual functional additive for the HTM layer in perovskite solar cells. Chemical Communications (Cambridge, England). 50: 5020-2. PMID 24709962 DOI: 10.1039/C3Cc49458F |
0.358 |
|
2014 |
Condon SM, Mitsuuchi Y, Deng Y, LaPorte MG, Rippin SR, Haimowitz T, Alexander MD, Kumar PT, Hendi MS, Lee YH, Benetatos CA, Yu G, Kapoor GS, Neiman E, Seipel ME, ... ... Shi Y, et al. Birinapant, a smac-mimetic with improved tolerability for the treatment of solid tumors and hematological malignancies. Journal of Medicinal Chemistry. 57: 3666-77. PMID 24684347 DOI: 10.1021/Jm500176W |
0.514 |
|
2014 |
Lackford B, Yao C, Charles GM, Weng L, Zheng X, Choi EA, Xie X, Wan J, Xing Y, Freudenberg JM, Yang P, Jothi R, Hu G, Shi Y. Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal. The Embo Journal. 33: 878-89. PMID 24596251 DOI: 10.1002/Embj.201386537 |
0.398 |
|
2014 |
Benetatos CA, Mitsuuchi Y, Burns JM, Neiman EM, Condon SM, Yu G, Seipel ME, Kapoor GS, Laporte MG, Rippin SR, Deng Y, Hendi MS, Tirunahari PK, Lee YH, Haimowitz T, ... ... Shi Y, et al. Birinapant (TL32711), a bivalent SMAC mimetic, targets TRAF2-associated cIAPs, abrogates TNF-induced NF-κB activation, and is active in patient-derived xenograft models. Molecular Cancer Therapeutics. 13: 867-79. PMID 24563541 DOI: 10.1158/1535-7163.Mct-13-0798 |
0.397 |
|
2014 |
Zhou L, Zhou Y, Hang J, Wan R, Lu G, Yan C, Shi Y. Crystal structure and biochemical analysis of the heptameric Lsm1-7 complex. Cell Research. 24: 497-500. PMID 24513854 DOI: 10.1038/Cr.2014.18 |
0.309 |
|
2014 |
Lu P, Ma D, Yan C, Gong X, Du M, Shi Y. Structure and mechanism of a eukaryotic transmembrane ascorbate-dependent oxidoreductase. Proceedings of the National Academy of Sciences of the United States of America. 111: 1813-8. PMID 24449903 DOI: 10.1073/Pnas.1323931111 |
0.721 |
|
2014 |
Zhou L, Hang J, Zhou Y, Wan R, Lu G, Yin P, Yan C, Shi Y. Crystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA. Nature. 506: 116-20. PMID 24240276 DOI: 10.1038/Nature12803 |
0.489 |
|
2014 |
Chai J, Shi Y. Apoptosome and inflammasome: Conserved machineries for caspase activation National Science Review. 1: 101-118. DOI: 10.1093/Nsr/Nwt025 |
0.625 |
|
2014 |
Shi Y. Life, career, and structural biology Physica Scripta. 89. DOI: 10.1088/0031-8949/89/6/068004 |
0.32 |
|
2013 |
Yin P, Li Q, Yan C, Liu Y, Liu J, Yu F, Wang Z, Long J, He J, Wang HW, Wang J, Zhu JK, Shi Y, Yan N. Structural basis for the modular recognition of single-stranded RNA by PPR proteins. Nature. 504: 168-71. PMID 24162847 DOI: 10.1038/Nature12651 |
0.668 |
|
2013 |
Yao C, Choi EA, Weng L, Xie X, Wan J, Xing Y, Moresco JJ, Tu PG, Yates JR, Shi Y. Overlapping and distinct functions of CstF64 and CstF64Ï„ in mammalian mRNA 3' processing. Rna (New York, N.Y.). 19: 1781-90. PMID 24149845 DOI: 10.1261/Rna.042317.113 |
0.405 |
|
2013 |
Xie T, Peng W, Yan C, Wu J, Gong X, Shi Y. Structural insights into RIP3-mediated necroptotic signaling. Cell Reports. 5: 70-8. PMID 24095729 DOI: 10.1016/J.Celrep.2013.08.044 |
0.364 |
|
2013 |
Huang W, Jiang T, Choi W, Qi S, Pang Y, Hu Q, Xu Y, Gong X, Jeffrey PD, Wang J, Shi Y. Mechanistic insights into CED-4-mediated activation of CED-3. Genes & Development. 27: 2039-48. PMID 24065769 DOI: 10.1101/Gad.224428.113 |
0.815 |
|
2013 |
Shi Y. Common folds and transport mechanisms of secondary active transporters. Annual Review of Biophysics. 42: 51-72. PMID 23654302 DOI: 10.1146/Annurev-Biophys-083012-130429 |
0.318 |
|
2013 |
Liu J, Mei Z, Li N, Qi Y, Xu Y, Shi Y, Wang F, Lei J, Gao N. Structural dynamics of the MecA-ClpC complex: a type II AAA+ protein unfolding machine. The Journal of Biological Chemistry. 288: 17597-608. PMID 23595989 DOI: 10.1074/Jbc.M113.458752 |
0.377 |
|
2013 |
Ma D, Lu P, Shi Y. Substrate selectivity of the acid-activated glutamate/γ-aminobutyric acid (GABA) antiporter GadC from Escherichia coli. The Journal of Biological Chemistry. 288: 15148-53. PMID 23589309 DOI: 10.1074/Jbc.M113.474502 |
0.666 |
|
2013 |
Yan H, Huang W, Yan C, Gong X, Jiang S, Zhao Y, Wang J, Shi Y. Structure and mechanism of a nitrate transporter. Cell Reports. 3: 716-23. PMID 23523348 DOI: 10.1016/J.Celrep.2013.03.007 |
0.349 |
|
2013 |
Xie T, Peng W, Liu Y, Yan C, Maki J, Degterev A, Yuan J, Shi Y. Structural basis of RIP1 inhibition by necrostatins. Structure (London, England : 1993). 21: 493-9. PMID 23473668 DOI: 10.1016/J.Str.2013.01.016 |
0.426 |
|
2013 |
Lu P, Ma D, Chen Y, Guo Y, Chen GQ, Deng H, Shi Y. L-glutamine provides acid resistance for Escherichia coli through enzymatic release of ammonia. Cell Research. 23: 635-44. PMID 23337585 DOI: 10.1038/Cr.2013.13 |
0.673 |
|
2013 |
Li X, Dang S, Yan C, Gong X, Wang J, Shi Y. Structure of a presenilin family intramembrane aspartate protease. Nature. 493: 56-61. PMID 23254940 DOI: 10.1038/Nature11801 |
0.518 |
|
2012 |
Yao C, Biesinger J, Wan J, Weng L, Xing Y, Xie X, Shi Y. Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation. Proceedings of the National Academy of Sciences of the United States of America. 109: 18773-8. PMID 23112178 DOI: 10.1073/Pnas.1211101109 |
0.432 |
|
2012 |
Yin P, Deng D, Yan C, Pan X, Xi JJ, Yan N, Shi Y. Specific DNA-RNA hybrid recognition by TAL effectors. Cell Reports. 2: 707-13. PMID 23022487 DOI: 10.1016/J.Celrep.2012.09.001 |
0.779 |
|
2012 |
Deng D, Yin P, Yan C, Pan X, Gong X, Qi S, Xie T, Mahfouz M, Zhu JK, Yan N, Shi Y. Recognition of methylated DNA by TAL effectors. Cell Research. 22: 1502-4. PMID 22945353 DOI: 10.1038/Cr.2012.127 |
0.749 |
|
2012 |
Wong AH, Yan C, Shi Y. Crystal structure of the yeast metacaspase Yca1. The Journal of Biological Chemistry. 287: 29251-9. PMID 22761449 DOI: 10.1074/Jbc.M112.381806 |
0.443 |
|
2012 |
Ma D, Lu P, Yan C, Fan C, Yin P, Wang J, Shi Y. Structure and mechanism of a glutamate-GABA antiporter. Nature. 483: 632-6. PMID 22407317 DOI: 10.1038/Nature10917 |
0.733 |
|
2012 |
Wu D, Hu Q, Yan Z, Chen W, Yan C, Huang X, Zhang J, Yang P, Deng H, Wang J, Deng X, Shi Y. Structural basis of ultraviolet-B perception by UVR8. Nature. 484: 214-9. PMID 22388820 DOI: 10.1038/Nature10931 |
0.318 |
|
2012 |
Huang W, Choi W, Hu W, Mi N, Guo Q, Ma M, Liu M, Tian Y, Lu P, Wang FL, Deng H, Liu L, Gao N, Yu L, Shi Y. Crystal structure and biochemical analyses reveal Beclin 1 as a novel membrane binding protein. Cell Research. 22: 473-89. PMID 22310240 DOI: 10.1038/Cr.2012.24 |
0.731 |
|
2012 |
Deng D, Yan C, Pan X, Mahfouz M, Wang J, Zhu JK, Shi Y, Yan N. Structural basis for sequence-specific recognition of DNA by TAL effectors. Science (New York, N.Y.). 335: 720-3. PMID 22223738 DOI: 10.1126/Science.1215670 |
0.794 |
|
2011 |
Yu JW, Jeffrey PD, Ha JY, Yang X, Shi Y. Crystal structure of the mucosa-associated lymphoid tissue lymphoma translocation 1 (MALT1) paracaspase region. Proceedings of the National Academy of Sciences of the United States of America. 108: 21004-9. PMID 22158899 DOI: 10.1073/Pnas.1111708108 |
0.436 |
|
2011 |
Li X, Wang J, Shi Y. Structural mechanisms of DIAP1 auto-inhibition and DIAP1-mediated inhibition of drICE. Nature Communications. 2: 408. PMID 21811237 DOI: 10.1038/Ncomms1418 |
0.601 |
|
2011 |
Shi Y, Yang S, Troup S, Lu X, Callaghan S, Park DS, Xing Y, Yang X. Resveratrol induces apoptosis in breast cancer cells by E2F1-mediated up-regulation of ASPP1. Oncology Reports. 25: 1713-9. PMID 21479363 DOI: 10.3892/or.2011.1248 |
0.456 |
|
2011 |
Wang F, Mei Z, Qi Y, Yan C, Hu Q, Wang J, Shi Y. Structure and mechanism of the hexameric MecA-ClpC molecular machine. Nature. 471: 331-5. PMID 21368759 DOI: 10.1038/Nature09780 |
0.409 |
|
2010 |
Zhang P, Wang J, Shi Y. Structure and mechanism of the S component of a bacterial ECF transporter. Nature. 468: 717-20. PMID 20972419 DOI: 10.1038/Nature09488 |
0.337 |
|
2010 |
Qi S, Pang Y, Hu Q, Liu Q, Li H, Zhou Y, He T, Liang Q, Liu Y, Yuan X, Luo G, Li H, Wang J, Yan N, Shi Y. Crystal structure of the Caenorhabditis elegans apoptosome reveals an octameric assembly of CED-4. Cell. 141: 446-57. PMID 20434985 DOI: 10.1016/J.Cell.2010.03.017 |
0.792 |
|
2010 |
Mei Y, Yong J, Liu H, Shi Y, Meinkoth J, Dreyfuss G, Yang X. tRNA binds to cytochrome c and inhibits caspase activation. Molecular Cell. 37: 668-78. PMID 20227371 DOI: 10.1016/J.Molcel.2010.01.023 |
0.407 |
|
2010 |
Gao X, Zhou L, Jiao X, Lu F, Yan C, Zeng X, Wang J, Shi Y. Mechanism of substrate recognition and transport by an amino acid antiporter. Nature. 463: 828-32. PMID 20090677 DOI: 10.1038/Nature08741 |
0.366 |
|
2009 |
Wang Y, Huang Y, Wang J, Cheng C, Huang W, Lu P, Xu YN, Wang P, Yan N, Shi Y. Structure of the formate transporter FocA reveals a pentameric aquaporin-like channel. Nature. 462: 467-72. PMID 19940917 DOI: 10.1038/Nature08610 |
0.778 |
|
2009 |
Huhn J, Jeffrey PD, Larsen K, Rundberget T, Rise F, Cox NR, Arcus V, Shi Y, Miles CO. A structural basis for the reduced toxicity of dinophysistoxin-2. Chemical Research in Toxicology. 22: 1782-6. PMID 19916524 DOI: 10.1021/Tx9001622 |
0.694 |
|
2009 |
Shi Y. Serine/threonine phosphatases: mechanism through structure. Cell. 139: 468-84. PMID 19879837 DOI: 10.1016/J.Cell.2009.10.006 |
0.37 |
|
2009 |
Wang F, Mei Z, Qi Y, Yan C, Xiang S, Zhou Z, Hu Q, Wang J, Shi Y. Crystal structure of the MecA degradation tag. The Journal of Biological Chemistry. 284: 34376-81. PMID 19801546 DOI: 10.1074/Jbc.M109.053033 |
0.436 |
|
2009 |
Mei Z, Wang F, Qi Y, Zhou Z, Hu Q, Li H, Wu J, Shi Y. Molecular determinants of MecA as a degradation tag for the ClpCP protease. The Journal of Biological Chemistry. 284: 34366-75. PMID 19767395 DOI: 10.1074/Jbc.M109.053017 |
0.569 |
|
2009 |
Gell DA, Feng L, Zhou S, Jeffrey PD, Bendak K, Gow A, Weiss MJ, Shi Y, Mackay JP. A cis-proline in alpha-hemoglobin stabilizing protein directs the structural reorganization of alpha-hemoglobin. The Journal of Biological Chemistry. 284: 29462-9. PMID 19706593 DOI: 10.1074/Jbc.M109.027045 |
0.343 |
|
2009 |
Li X, Wang B, Feng L, Kang H, Qi Y, Wang J, Shi Y. Cleavage of RseA by RseP requires a carboxyl-terminal hydrophobic amino acid following DegS cleavage. Proceedings of the National Academy of Sciences of the United States of America. 106: 14837-42. PMID 19706448 DOI: 10.1073/Pnas.0903289106 |
0.541 |
|
2009 |
Geng X, Zhou QH, Kage-Nakadai E, Shi Y, Yan N, Mitani S, Xue D. Caenorhabditis elegans caspase homolog CSP-2 inhibits CED-3 autoactivation and apoptosis in germ cells. Cell Death and Differentiation. 16: 1385-94. PMID 19575016 DOI: 10.1038/Cdd.2009.88 |
0.666 |
|
2009 |
Zhang F, Wu Z, Zhang P, Tian G, Finley D, Shi Y. Mechanism of substrate unfolding and translocation by the regulatory particle of the proteasome from Methanocaldococcus jannaschii. Molecular Cell. 34: 485-96. PMID 19481528 DOI: 10.1016/J.Molcel.2009.04.022 |
0.382 |
|
2009 |
Zhang F, Hu M, Tian G, Zhang P, Finley D, Jeffrey PD, Shi Y. Structural insights into the regulatory particle of the proteasome from Methanocaldococcus jannaschii. Molecular Cell. 34: 473-84. PMID 19481527 DOI: 10.1016/J.Molcel.2009.04.021 |
0.401 |
|
2009 |
Gao X, Lu F, Zhou L, Dang S, Sun L, Li X, Wang J, Shi Y. Structure and mechanism of an amino acid antiporter. Science (New York, N.Y.). 324: 1565-8. PMID 19478139 DOI: 10.1126/Science.1173654 |
0.445 |
|
2009 |
Yu JW, Jeffrey PD, Shi Y. Mechanism of procaspase-8 activation by c-FLIPL. Proceedings of the National Academy of Sciences of the United States of America. 106: 8169-74. PMID 19416807 DOI: 10.1073/Pnas.0812453106 |
0.382 |
|
2009 |
Roelofs J, Park S, Haas W, Tian G, McAllister FE, Huo Y, Lee BH, Zhang F, Shi Y, Gygi SP, Finley D. Chaperone-mediated pathway of proteasome regulatory particle assembly. Nature. 459: 861-5. PMID 19412159 DOI: 10.1038/Nature08063 |
0.359 |
|
2009 |
Shi Y. Assembly and structure of protein phosphatase 2A. Science in China. Series C, Life Sciences / Chinese Academy of Sciences. 52: 135-46. PMID 19277525 DOI: 10.1007/S11427-009-0018-3 |
0.349 |
|
2009 |
Zhang X, Wang J, Fan C, Li H, Sun H, Gong S, Chen YH, Shi Y. Crystal structure of TIPE2 provides insights into immune homeostasis. Nature Structural & Molecular Biology. 16: 89-90. PMID 19079267 DOI: 10.1038/Nsmb.1522 |
0.402 |
|
2009 |
Shi Y. Structure and mechanism of Site-2 Protease Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.1949 |
0.327 |
|
2008 |
Yu JW, Shi Y. FLIP and the death effector domain family Oncogene. 27: 6216-6227. PMID 18931689 DOI: 10.1038/Onc.2008.299 |
0.413 |
|
2008 |
Xu Y, Chen Y, Zhang P, Jeffrey PD, Shi Y. Structure of a protein phosphatase 2A holoenzyme: insights into B55-mediated Tau dephosphorylation. Molecular Cell. 31: 873-85. PMID 18922469 DOI: 10.1016/J.Molcel.2008.08.006 |
0.678 |
|
2008 |
Geng X, Shi Y, Nakagawa A, Yoshina S, Mitani S, Shi Y, Xue D. Inhibition of CED-3 zymogen activation and apoptosis in Caenorhabditis elegans by caspase homolog CSP-3. Nature Structural & Molecular Biology. 15: 1094-101. PMID 18776901 DOI: 10.1038/Nsmb.1488 |
0.42 |
|
2008 |
Shi Y. Apoptosome assembly. Methods in Enzymology. 442: 141-56. PMID 18662568 DOI: 10.1016/S0076-6879(08)01407-9 |
0.306 |
|
2008 |
Urban S, Shi Y. Core principles of intramembrane proteolysis: comparison of rhomboid and site-2 family proteases. Current Opinion in Structural Biology. 18: 432-41. PMID 18440799 DOI: 10.1016/J.Sbi.2008.03.005 |
0.332 |
|
2008 |
Du YF, Shi Y, Xing YF, Xing YF, Zeng FQ, Zeng FQ. Establishment of CXCR4-small interfering RNA retrovirus vector driven by human prostate-specific antigen promoter and its biological effects on prostate cancer in vitro and in vivo. Journal of Cancer Research and Clinical Oncology. 134: 1255-64. PMID 18431597 DOI: 10.1007/s00432-008-0394-2 |
0.362 |
|
2008 |
Fang C, Tang W, Tang RQ, Wang L, Zhou GQ, Huang K, Li XW, Feng GY, He M, Du LZ, Zhu SM, Xing YL, Sang H, He L, Shi YY. Family-based association studies of CAPON and schizophrenia in the Chinese Han population. Progress in Neuro-Psychopharmacology & Biological Psychiatry. 32: 1210-3. PMID 18430503 DOI: 10.1016/j.pnpbp.2008.03.007 |
0.362 |
|
2008 |
Xing Y, Li Z, Chen Y, Stock JB, Jeffrey PD, Shi Y. Structural mechanism of demethylation and inactivation of protein phosphatase 2A. Cell. 133: 154-63. PMID 18394995 DOI: 10.1016/J.Cell.2008.02.041 |
0.609 |
|
2008 |
Shi Y. Deubiquitination of Lys63-linkage by a CYLD UBP. Structure (London, England : 1993). 16: 338-40. PMID 18334208 DOI: 10.1016/J.Str.2008.02.001 |
0.316 |
|
2007 |
Feng L, Yan H, Wu Z, Yan N, Wang Z, Jeffrey PD, Shi Y. Structure of a site-2 protease family intramembrane metalloprotease. Science (New York, N.Y.). 318: 1608-12. PMID 18063795 DOI: 10.1126/Science.1150755 |
0.67 |
|
2007 |
Yan N, Shi Y. Allosteric activation of a bacterial stress sensor. Cell. 131: 441-3. PMID 17981109 DOI: 10.1016/J.Cell.2007.10.021 |
0.625 |
|
2007 |
Chen G, Jeffrey PD, Fuqua C, Shi Y, Chen L. Structural basis for antiactivation in bacterial quorum sensing. Proceedings of the National Academy of Sciences of the United States of America. 104: 16474-9. PMID 17921255 DOI: 10.1073/Pnas.0704843104 |
0.388 |
|
2007 |
Luo W, Lu Y, Giesy JP, Wang T, Shi Y, Wang G, Xing Y. Effects of land use on concentrations of metals in surface soils and ecological risk around Guanting Reservoir, China. Environmental Geochemistry and Health. 29: 459-71. PMID 17805979 DOI: 10.1007/S10653-007-9115-Z |
0.348 |
|
2007 |
Xing Y, Lü YL, Shi YJ, Wang TY, Luo W, Wang G, Ma H, Sun YM. [Assessment on PCBs wastes treatment technologies including incineration, cement kiln and secure landfill]. Huan Jing Ke Xue= Huanjing Kexue / [Bian Ji, Zhongguo Ke Xue Yuan Huan Jing Ke Xue Wei Yuan Hui "Huan Jing Ke Xue" Bian Ji Wei Yuan Hui.]. 28: 673-8. PMID 17633654 |
0.346 |
|
2007 |
Chen Y, Xu Y, Bao Q, Xing Y, Li Z, Lin Z, Stock JB, Jeffrey PD, Shi Y. Structural and biochemical insights into the regulation of protein phosphatase 2A by small t antigen of SV40. Nature Structural & Molecular Biology. 14: 527-34. PMID 17529992 DOI: 10.1038/Nsmb1254 |
0.79 |
|
2007 |
Baker RP, Young K, Feng L, Shi Y, Urban S. Enzymatic analysis of a rhomboid intramembrane protease implicates transmembrane helix 5 as the lateral substrate gate. Proceedings of the National Academy of Sciences of the United States of America. 104: 8257-62. PMID 17463085 DOI: 10.1073/Pnas.0700814104 |
0.374 |
|
2007 |
Wang X, Wang J, Gengyo-Ando K, Gu L, Sun CL, Yang C, Shi Y, Kobayashi T, Shi Y, Mitani S, Xie XS, Xue D. C. elegans mitochondrial factor WAH-1 promotes phosphatidylserine externalization in apoptotic cells through phospholipid scramblase SCRM-1. Nature Cell Biology. 9: 541-9. PMID 17401362 DOI: 10.1038/Ncb1574 |
0.344 |
|
2007 |
Oberstein A, Jeffrey PD, Shi Y. Crystal structure of the Bcl-XL-Beclin 1 peptide complex: Beclin 1 is a novel BH3-only protein. The Journal of Biological Chemistry. 282: 13123-32. PMID 17337444 DOI: 10.1074/Jbc.M700492200 |
0.743 |
|
2007 |
Wist AD, Gu L, Riedl SJ, Shi Y, McLendon GL. Structure-activity based study of the Smac-binding pocket within the BIR3 domain of XIAP Bioorganic and Medicinal Chemistry. 15: 2935-2943. PMID 17336535 DOI: 10.1016/J.Bmc.2007.02.010 |
0.368 |
|
2007 |
Bao Q, Lu W, Rabinowitz JD, Shi Y. Calcium blocks formation of apoptosome by preventing nucleotide exchange in Apaf-1. Molecular Cell. 25: 181-92. PMID 17244527 DOI: 10.1016/J.Molcel.2006.12.013 |
0.56 |
|
2007 |
Zhao X, Tang R, Gao B, Shi Y, Zhou J, Guo S, Zhang J, Wang Y, Tang W, Meng J, Li S, Wang H, Ma G, Lin C, Xiao Y, et al. Functional variants in the promoter region of Chitinase 3-like 1 (CHI3L1) and susceptibility to schizophrenia. American Journal of Human Genetics. 80: 12-8. PMID 17160890 DOI: 10.1086/510438 |
0.377 |
|
2007 |
Luo W, Wang T, Lu Y, Giesy JP, Shi Y, Zheng Y, Xing Y, Wu G. Landscape ecology of the Guanting Reservoir, Beijing, China: multivariate and geostatistical analyses of metals in soils. Environmental Pollution (Barking, Essex : 1987). 146: 567-76. PMID 17010487 DOI: 10.1016/J.Envpol.2006.08.001 |
0.342 |
|
2007 |
Bao Q, Shi Y. Apoptosome: a platform for the activation of initiator caspases. Cell Death and Differentiation. 14: 56-65. PMID 16977332 DOI: 10.1038/Sj.Cdd.4402028 |
0.614 |
|
2006 |
Xu Y, Xing Y, Chen Y, Chao Y, Lin Z, Fan E, Yu JW, Strack S, Jeffrey PD, Shi Y. Structure of the protein phosphatase 2A holoenzyme. Cell. 127: 1239-51. PMID 17174897 DOI: 10.1016/J.Cell.2006.11.033 |
0.719 |
|
2006 |
Wu Z, Yan N, Feng L, Oberstein A, Yan H, Baker RP, Gu L, Jeffrey PD, Urban S, Shi Y. Structural analysis of a rhomboid family intramembrane protease reveals a gating mechanism for substrate entry. Nature Structural & Molecular Biology. 13: 1084-91. PMID 17099694 DOI: 10.1038/Nsmb1179 |
0.798 |
|
2006 |
Xing Y, Xu Y, Chen Y, Jeffrey PD, Chao Y, Lin Z, Li Z, Strack S, Stock JB, Shi Y. Structure of protein phosphatase 2A core enzyme bound to tumor-inducing toxins. Cell. 127: 341-53. PMID 17055435 DOI: 10.1016/J.Cell.2006.09.025 |
0.738 |
|
2006 |
Shi Y. Mechanical aspects of apoptosome assembly. Current Opinion in Cell Biology. 18: 677-84. PMID 17046227 DOI: 10.1016/J.Ceb.2006.09.006 |
0.409 |
|
2006 |
Chao Y, Xing Y, Chen Y, Xu Y, Lin Z, Li Z, Jeffrey PD, Stock JB, Shi Y. Structure and mechanism of the phosphotyrosyl phosphatase activator. Molecular Cell. 23: 535-46. PMID 16916641 DOI: 10.1016/J.Molcel.2006.07.027 |
0.766 |
|
2006 |
Lin X, Duan X, Liang YY, Su Y, Wrighton KH, Long J, Hu M, Davis CM, Wang J, Brunicardi FC, Shi Y, Chen YG, Meng A, Feng XH. PPM1A functions as a Smad phosphatase to terminate TGFbeta signaling. Cell. 125: 915-28. PMID 16751101 DOI: 10.1016/J.Cell.2006.03.044 |
0.304 |
|
2006 |
Xing Y, Lü YL, Liu WB, Shi YJ, Luo W, Ren HC. [Assessment of PCB pollution in spatial distribution and analysis of the PCB sources in sediments in China]. Huan Jing Ke Xue= Huanjing Kexue / [Bian Ji, Zhongguo Ke Xue Yuan Huan Jing Ke Xue Wei Yuan Hui "Huan Jing Ke Xue" Bian Ji Wei Yuan Hui.]. 27: 228-34. PMID 16686180 |
0.355 |
|
2006 |
Wang TY, Lu YL, Dawson RW, Shi YJ, Zhang H, Xing Y. Effects of environmental factors on organochlorine pesticide residues in soils of the Guanting Reservoir area, China. Journal of Environmental Science and Health. Part. B, Pesticides, Food Contaminants, and Agricultural Wastes. 41: 309-21. PMID 16484090 DOI: 10.1080/03601230500357538 |
0.355 |
|
2006 |
Yang C, Yan N, Parish J, Wang X, Shi Y, Xue D. RNA aptamers targeting the cell death inhibitor CED-9 induce cell killing in Caenorhabditis elegans. The Journal of Biological Chemistry. 281: 9137-44. PMID 16467303 DOI: 10.1074/Jbc.M511742200 |
0.67 |
|
2006 |
Tang W, Shi Y, Feng G, Yan L, Xing Y, Zhu S, Liu J, Zhao X, Tang R, Du J, Zhang J, He G, Liang P, He L. Family-based association studies of the TCP1 gene and schizophrenia in the Chinese Han population. Journal of Neural Transmission (Vienna, Austria : 1996). 113: 1537-43. PMID 16465465 DOI: 10.1007/s00702-005-0419-9 |
0.348 |
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2006 |
Yan N, Huh JR, Schirf V, Demeler B, Hay BA, Shi Y. Structure and activation mechanism of the Drosophila initiator caspase Dronc. The Journal of Biological Chemistry. 281: 8667-74. PMID 16446367 DOI: 10.1074/Jbc.M513232200 |
0.69 |
|
2006 |
Hu M, Gu L, Li M, Jeffrey PD, Gu W, Shi Y. Structural basis of competitive recognition of p53 and MDM2 by HAUSP/USP7: implications for the regulation of the p53-MDM2 pathway. Plos Biology. 4: e27. PMID 16402859 DOI: 10.1371/Journal.Pbio.0040027 |
0.358 |
|
2006 |
Tang RQ, Zhao XZ, Shi YY, Tang W, Gu NF, Feng GY, Xing YL, Zhu SM, Sang H, Liang PJ, He L. Family-based association study of Epsin 4 and Schizophrenia. Molecular Psychiatry. 11: 395-9. PMID 16402136 DOI: 10.1038/sj.mp.4001780 |
0.36 |
|
2006 |
Zhao X, Tang R, Xiao Z, Shi Y, Feng G, Gu N, Shi J, Xing Y, Yan L, Sang H, Zhu S, Liu H, Chen W, Liu J, Tang W, et al. An investigation of the dihydropyrimidinase-like 2 (DPYSL2) gene in schizophrenia: genetic association study and expression analysis. The International Journal of Neuropsychopharmacology / Official Scientific Journal of the Collegium Internationale Neuropsychopharmacologicum (Cinp). 9: 705-12. PMID 16321170 DOI: 10.1017/S1461145705006267 |
0.354 |
|
2006 |
Li FY, Jeffrey PD, Yu JW, Shi Y. Crystal structure of a viral FLIP: insights into FLIP-mediated inhibition of death receptor signaling. The Journal of Biological Chemistry. 281: 2960-8. PMID 16317000 DOI: 10.1074/Jbc.M511074200 |
0.418 |
|
2006 |
Yan N, Xu Y, Shi Y. 2:1 Stoichiometry of the CED-4-CED-9 complex and the tetrameric CED-4: insights into the regulation of CED-3 activation. Cell Cycle (Georgetown, Tex.). 5: 31-4. PMID 16294007 DOI: 10.4161/Cc.5.1.2263 |
0.799 |
|
2005 |
Weiss MJ, Zhou S, Feng L, Gell DA, Mackay JP, Shi Y, Gow AJ. Role of alpha-hemoglobin-stabilizing protein in normal erythropoiesis and beta-thalassemia. Annals of the New York Academy of Sciences. 1054: 103-17. PMID 16339656 DOI: 10.1196/Annals.1345.013 |
0.314 |
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2005 |
Shi YJ, Lu YL, Zhang H, Wang TY, Xing Y. Persistent organic pollutants control strategy in China. Journal of Environmental Sciences (China). 17: 309-14. PMID 16295912 |
0.352 |
|
2005 |
Yu X, Acehan D, Ménétret JF, Booth CR, Ludtke SJ, Riedl SJ, Shi Y, Wang X, Akey CW. A structure of the human apoptosome at 12.8 A resolution provides insights into this cell death platform. Structure (London, England : 1993). 13: 1725-35. PMID 16271896 DOI: 10.1016/J.Str.2005.09.006 |
0.425 |
|
2005 |
Yan N, Shi Y. Mechanisms of apoptosis through structural biology. Annual Review of Cell and Developmental Biology. 21: 35-56. PMID 16212486 DOI: 10.1146/Annurev.Cellbio.21.012704.131040 |
0.683 |
|
2005 |
Hu M, Li P, Song L, Jeffrey PD, Chenova TA, Wilkinson KD, Cohen RE, Shi Y. Structure and mechanisms of the proteasome-associated deubiquitinating enzyme USP14. The Embo Journal. 24: 3747-56. PMID 16211010 DOI: 10.1038/Sj.Emboj.7600832 |
0.433 |
|
2005 |
Yan N, Chai J, Lee ES, Gu L, Liu Q, He J, Wu JW, Kokel D, Li H, Hao Q, Xue D, Shi Y. Structure of the CED-4-CED-9 complex provides insights into programmed cell death in Caenorhabditis elegans. Nature. 437: 831-7. PMID 16208361 DOI: 10.1038/Nature04002 |
0.782 |
|
2005 |
Bao Q, Riedl SJ, Shi Y. Structure of Apaf-1 in the auto-inhibited form: a critical role for ADP. Cell Cycle (Georgetown, Tex.). 4: 1001-3. PMID 15970665 DOI: 10.4161/Cc.4.8.1849 |
0.649 |
|
2005 |
Xing Y, Lu Y, Dawson RW, Shi Y, Zhang H, Wang T, Liu W, Ren H. A spatial temporal assessment of pollution from PCBs in China. Chemosphere. 60: 731-9. PMID 15964056 DOI: 10.1016/j.chemosphere.2005.05.001 |
0.354 |
|
2005 |
Chao Y, Shiozaki EN, Srinivasula SM, Rigotti DJ, Fairman R, Shi Y. Engineering a dimeric caspase-9: a re-evaluation of the induced proximity model for caspase activation. Plos Biology. 3: e183. PMID 15941357 DOI: 10.1371/Journal.Pbio.0030183 |
0.809 |
|
2005 |
Feng L, Zhou S, Gu L, Gell DA, Mackay JP, Weiss MJ, Gow AJ, Shi Y. Structure of oxidized alpha-haemoglobin bound to AHSP reveals a protective mechanism for haem. Nature. 435: 697-701. PMID 15931225 DOI: 10.1038/Nature03609 |
0.322 |
|
2005 |
Riedl SJ, Li W, Chao Y, Schwarzenbacher R, Shi Y. Structure of the apoptotic protease-activating factor 1 bound to ADP. Nature. 434: 926-33. PMID 15829969 DOI: 10.1038/Nature03465 |
0.483 |
|
2004 |
Tibbetts MD, Shiozaki EN, Gu L, McDonald ER, El-Deiry WS, Shi Y. Crystal structure of a FYVE-type zinc finger domain from the caspase regulator CARP2. Structure (London, England : 1993). 12: 2257-63. PMID 15576038 DOI: 10.1016/J.Str.2004.10.007 |
0.806 |
|
2004 |
Feng L, Gell DA, Zhou S, Gu L, Kong Y, Li J, Hu M, Yan N, Lee C, Rich AM, Armstrong RS, Lay PA, Gow AJ, Weiss MJ, Mackay JP, ... Shi Y, et al. Molecular mechanism of AHSP-mediated stabilization of alpha-hemoglobin. Cell. 119: 629-40. PMID 15550245 DOI: 10.1016/J.Cell.2004.11.025 |
0.607 |
|
2004 |
Riedl SJ, Shi Y. Molecular mechanisms of caspase regulation during apoptosis. Nature Reviews. Molecular Cell Biology. 5: 897-907. PMID 15520809 DOI: 10.1038/Nrm1496 |
0.406 |
|
2004 |
Yan N, Gu L, Kokel D, Chai J, Li W, Han A, Chen L, Xue D, Shi Y. Structural, biochemical, and functional analyses of CED-9 recognition by the proapoptotic proteins EGL-1 and CED-4. Molecular Cell. 15: 999-1006. PMID 15383288 DOI: 10.1016/J.Molcel.2004.08.022 |
0.743 |
|
2004 |
Shiozaki EN, Shi Y. Caspases, IAPs and Smac/DIABLO: mechanisms from structural biology. Trends in Biochemical Sciences. 29: 486-94. PMID 15337122 DOI: 10.1016/J.Tibs.2004.07.003 |
0.811 |
|
2004 |
La P, Silva AC, Hou Z, Wang H, Schnepp RW, Yan N, Shi Y, Hua X. Direct binding of DNA by tumor suppressor menin. The Journal of Biological Chemistry. 279: 49045-54. PMID 15331604 DOI: 10.1074/Jbc.M409358200 |
0.653 |
|
2004 |
Shi Y. Caspase activation, inhibition, and reactivation: a mechanistic view. Protein Science : a Publication of the Protein Society. 13: 1979-87. PMID 15273300 DOI: 10.1110/Ps.04789804 |
0.438 |
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2004 |
Shi Y. Caspase activation: revisiting the induced proximity model. Cell. 117: 855-8. PMID 15210107 DOI: 10.1016/J.Cell.2004.06.007 |
0.397 |
|
2004 |
Shiozaki EN, Gu L, Yan N, Shi Y. Structure of the BRCT repeats of BRCA1 bound to a BACH1 phosphopeptide: implications for signaling. Molecular Cell. 14: 405-12. PMID 15125843 DOI: 10.1016/S1097-2765(04)00238-2 |
0.791 |
|
2004 |
Yan N, Wu JW, Chai J, Li W, Shi Y. Molecular mechanisms of DrICE inhibition by DIAP1 and removal of inhibition by Reaper, Hid and Grim. Nature Structural & Molecular Biology. 11: 420-8. PMID 15107838 DOI: 10.1038/Nsmb764 |
0.784 |
|
2004 |
Huh JR, Vernooy SY, Yu H, Yan N, Shi Y, Guo M, Hay BA. Multiple apoptotic caspase cascades are required in nonapoptotic roles for Drosophila spermatid individualization. Plos Biology. 2: E15. PMID 14737191 DOI: 10.1371/Journal.Pbio.0020015 |
0.676 |
|
2004 |
Zhao X, Shi Y, Tang J, Tang R, Yu L, Gu N, Feng G, Zhu S, Liu H, Xing Y, Zhao S, Sang H, Guan Y, St Clair D, He L. A case control and family based association study of the neuregulin1 gene and schizophrenia. Journal of Medical Genetics. 41: 31-4. PMID 14729827 DOI: 10.1136/jmg.2003.014977 |
0.354 |
|
2003 |
Yan N, Shi Y. Histone H1.2 as a trigger for apoptosis. Nature Structural Biology. 10: 983-5. PMID 14634629 DOI: 10.1038/Nsb1203-983 |
0.626 |
|
2003 |
Chai J, Yan N, Huh JR, Wu JW, Li W, Hay BA, Shi Y. Molecular mechanism of Reaper-Grim-Hid-mediated suppression of DIAP1-dependent Dronc ubiquitination. Nature Structural Biology. 10: 892-8. PMID 14517550 DOI: 10.1038/Nsb989 |
0.787 |
|
2003 |
Glover CJ, Hite K, DeLosh R, Scudiero DA, Fivash MJ, Smith LR, Fisher RJ, Wu JW, Shi Y, Kipp RA, McLendon GL, Sausville EA, Shoemaker RH. A high-throughput screen for identification of molecular mimics of Smac/DIABLO utilizing a fluorescence polarization assay. Analytical Biochemistry. 320: 157-69. PMID 12927820 DOI: 10.1016/S0003-2697(03)00389-0 |
0.362 |
|
2003 |
Tang JX, Zhou J, Fan JB, Li XW, Shi YY, Gu NF, Feng GY, Xing YL, Shi JG, He L. Family-based association study of DTNBP1 in 6p22.3 and schizophrenia. Molecular Psychiatry. 8: 717-8. PMID 12888799 DOI: 10.1038/sj.mp.4001287 |
0.354 |
|
2003 |
Shi Y, Massagué J. Mechanisms of TGF-beta signaling from cell membrane to the nucleus. Cell. 113: 685-700. PMID 12809600 DOI: 10.1016/S0092-8674(03)00432-X |
0.304 |
|
2003 |
Chai J, Wu JW, Yan N, Massagué J, Pavletich NP, Shi Y. Features of a Smad3 MH1-DNA complex: Roles of water and zinc in DNA binding Journal of Biological Chemistry. 278: 20327-20331. PMID 12686552 DOI: 10.1074/Jbc.C300134200 |
0.798 |
|
2003 |
Shiozaki EN, Chai J, Rigotti DJ, Riedl SJ, Li P, Srinivasula SM, Alnemri ES, Fairman R, Shi Y. Mechanism of XIAP-mediated inhibition of caspase-9. Molecular Cell. 11: 519-27. PMID 12620238 DOI: 10.1016/S1097-2765(03)00054-6 |
0.819 |
|
2002 |
Hu M, Li P, Li M, Li W, Yao T, Wu JW, Gu W, Cohen RE, Shi Y. Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde. Cell. 111: 1041-54. PMID 12507430 DOI: 10.1016/S0092-8674(02)01199-6 |
0.589 |
|
2002 |
Wang X, Yang C, Chai J, Shi Y, Xue D. Mechanisms of AIF-mediated apoptotic DNA degradation in Caenorhabditis elegans. Science (New York, N.Y.). 298: 1587-92. PMID 12446902 DOI: 10.1126/Science.1076194 |
0.568 |
|
2002 |
Wu JW, Krawitz AR, Chai J, Li W, Zhang F, Luo K, Shi Y. Structural mechanism of Smad4 recognition by the nuclear oncoprotein Ski: insights on Ski-mediated repression of TGF-beta signaling. Cell. 111: 357-67. PMID 12419246 DOI: 10.1016/S0092-8674(02)01006-1 |
0.561 |
|
2002 |
Kipp RA, Case MA, Wist AD, Cresson CM, Carrell M, Griner E, Wiita A, Albiniak PA, Chai J, Shi Y, Semmelhack MF, McLendon GL. Molecular targeting of inhibitor of apoptosis proteins based on small molecule mimics of natural binding partners Biochemistry. 41: 7344-7349. PMID 12044166 DOI: 10.1021/Bi0121454 |
0.54 |
|
2002 |
Shi Y. Apoptosome: the cellular engine for the activation of caspase-9. Structure (London, England : 1993). 10: 285-8. PMID 12005427 DOI: 10.1016/S0969-2126(02)00732-3 |
0.414 |
|
2002 |
Li W, Srinivasula SM, Chai J, Li P, Wu JW, Zhang Z, Alnemri ES, Shi Y. Structural insights into the pro-apoptotic function of mitochondrial serine protease HtrA2/Omi. Nature Structural Biology. 9: 436-41. PMID 11967569 DOI: 10.1038/Nsb795 |
0.706 |
|
2002 |
Shi Y. Mechanisms of caspase activation and inhibition during apoptosis. Molecular Cell. 9: 459-70. PMID 11931755 DOI: 10.1016/S1097-2765(02)00482-3 |
0.403 |
|
2002 |
Shiozaki EN, Chai J, Shi Y. Oligomerization and activation of caspase-9, induced by Apaf-1 CARD. Proceedings of the National Academy of Sciences of the United States of America. 99: 4197-202. PMID 11904389 DOI: 10.1073/Pnas.072544399 |
0.81 |
|
2002 |
Shi Y. A conserved tetrapeptide motif: potentiating apoptosis through IAP-binding. Cell Death and Differentiation. 9: 93-5. PMID 11840157 DOI: 10.1038/Sj.Cdd.4400957 |
0.385 |
|
2002 |
Srinivasula SM, Datta P, Kobayashi M, Wu JW, Fujioka M, Hegde R, Zhang Z, Mukattash R, Fernandes-Alnemri T, Shi Y, Jaynes JB, Alnemri ES. sickle, a novel Drosophila death gene in the reaper/hid/grim region, encodes an IAP-inhibitory protein. Current Biology : Cb. 12: 125-30. PMID 11818063 DOI: 10.1016/S0960-9822(01)00657-1 |
0.452 |
|
2001 |
Wu JW, Hu M, Chai J, Seoane J, Huse M, Li C, Rigotti DJ, Kyin S, Muir TW, Fairman R, Massagué J, Shi Y. Crystal structure of a phosphorylated Smad2. Recognition of phosphoserine by the MH2 domain and insights on Smad function in TGF-beta signaling. Molecular Cell. 8: 1277-89. PMID 11779503 DOI: 10.1016/S1097-2765(01)00421-X |
0.535 |
|
2001 |
Fesik SW, Shi Y. Structural biology. Controlling the caspases. Science (New York, N.Y.). 294: 1477-8. PMID 11711663 DOI: 10.1126/Science.1062236 |
0.412 |
|
2001 |
Chai J, Wu Q, Shiozaki E, Srinivasula SM, Alnemri ES, Shi Y. Crystal structure of a procaspase-7 zymogen: mechanisms of activation and substrate binding. Cell. 107: 399-407. PMID 11701129 DOI: 10.1016/S0092-8674(01)00544-X |
0.825 |
|
2001 |
Wu JW, Cocina AE, Chai J, Hay BA, Shi Y. Structural analysis of a functional DIAP1 fragment bound to grim and hid peptides. Molecular Cell. 8: 95-104. PMID 11511363 DOI: 10.1016/S1097-2765(01)00282-9 |
0.595 |
|
2001 |
Shi Y. A structural view of mitochondria-mediated apoptosis Nature Structural Biology. 8: 394-401. PMID 11323712 DOI: 10.1038/87548 |
0.409 |
|
2001 |
Wu JW, Fairman R, Penry J, Shi Y. Formation of a stable heterodimer between Smad2 and Smad4. The Journal of Biological Chemistry. 276: 20688-94. PMID 11274206 DOI: 10.1074/Jbc.M100174200 |
0.349 |
|
2001 |
Chai J, Shiozaki E, Srinivasula SM, Wu Q, Datta P, Alnemri ES, Shi Y, Dataa P. Structural basis of caspase-7 inhibition by XIAP. Cell. 104: 769-80. PMID 11257230 DOI: 10.1016/S0092-8674(01)00272-0 |
0.824 |
|
2001 |
Srinivasula SM, Hegde R, Saleh A, Datta P, Shiozaki E, Chai J, Lee RA, Robbins PD, Fernandes-Alnemri T, Shi Y, Alnemri ES. A conserved XIAP-interaction motif in caspase-9 and Smac/DIABLO regulates caspase activity and apoptosis. Nature. 410: 112-6. PMID 11242052 DOI: 10.1038/35065125 |
0.812 |
|
2001 |
Srinivasula SM, Hegde R, Saleh A, Datta P, Shiozaki E, Chai J, Lee R, Robbins PD, Fernandes-Alnemri T, Shi Y, Alnemri ES. Erratum: correction: A conserved XIAP-interaction motif in caspase-9 and Smac/DIABLO regulates caspase activity and apoptosis Nature. 411: 1081-1081. DOI: 10.1038/35082622 |
0.801 |
|
2000 |
Wu G, Chai J, Suber TL, Wu JW, Du C, Wang X, Shi Y. Structural basis of IAP recognition by Smac/DIABLO. Nature. 408: 1008-12. PMID 11140638 DOI: 10.1038/35050012 |
0.741 |
|
2000 |
Chai J, Du C, Wu JW, Kyin S, Wang X, Shi Y. Structural and biochemical basis of apoptotic activation by Smac/DIABLO. Nature. 406: 855-62. PMID 10972280 DOI: 10.1038/35022514 |
0.622 |
|
2000 |
Shi Y. Survivin structure: Crystal unclear Nature Structural Biology. 7: 620-623. PMID 10932241 DOI: 10.1038/77904 |
0.37 |
|
2000 |
Ha S, Walker D, Shi Y, Walker S. The 1.9 A crystal structure of Escherichia coli MurG, a membrane-associated glycosyltransferase involved in peptidoglycan biosynthesis. Protein Science : a Publication of the Protein Society. 9: 1045-52. PMID 10892798 DOI: 10.1110/Ps.9.6.1045 |
0.399 |
|
1999 |
Song X, Shi Y, Zhu X, Chai J. [The application of chopping method for phacoemulsification of hard nucleus cataract]. [Zhonghua Yan Ke Za Zhi] Chinese Journal of Ophthalmology. 35: 88-90. PMID 11835779 |
0.356 |
|
1999 |
Hua X, Miller ZA, Wu G, Shi Y, Lodish HF. Specificity in transforming growth factor beta-induced transcription of the plasminogen activator inhibitor-1 gene: interactions of promoter DNA, transcription factor muE3, and Smad proteins. Proceedings of the National Academy of Sciences of the United States of America. 96: 13130-5. PMID 10557285 DOI: 10.1073/Pnas.96.23.13130 |
0.303 |
|
1999 |
Lee JO, Yang H, Georgescu MM, Di Cristofano A, Maehama T, Shi Y, Dixon JE, Pandolfi P, Pavletich NP. Crystal structure of the PTEN tumor suppressor: implications for its phosphoinositide phosphatase activity and membrane association. Cell. 99: 323-34. PMID 10555148 DOI: 10.1016/S0092-8674(00)81663-3 |
0.663 |
|
1999 |
Qin H, Srinivasula SM, Wu G, Fernandes-Alnemri T, Alnemri ES, Shi Y. Structural basis of procaspase-9 recruitment by the apoptotic protease-activating factor 1. Nature. 399: 549-57. PMID 10376594 DOI: 10.1038/21124 |
0.673 |
|
1999 |
Yan SD, Shi Y, Zhu A, Fu J, Zhu H, Zhu Y, Gibson L, Stern E, Collison K, Al-Mohanna F, Ogawa S, Roher A, Clarke SG, Stern DM. Role of ERAB/L-3-hydroxyacyl-coenzyme A dehydrogenase type II activity in Abeta-induced cytotoxicity. The Journal of Biological Chemistry. 274: 2145-56. PMID 9890977 DOI: 10.1074/Jbc.274.4.2145 |
0.311 |
|
1998 |
Shi Y, Wang YF, Jayaraman L, Yang H, Massagué J, Pavletich NP. Crystal structure of a Smad MH1 domain bound to DNA: Insights on DNA binding in TGF-β signaling Cell. 94: 585-594. PMID 9741623 DOI: 10.1016/S0092-8674(00)81600-1 |
0.666 |
|
1998 |
Chen YG, Hata A, Lo RS, Wotton D, Shi Y, Pavletich N, Massagué J. Determinants of specificity in TGF-β signal transduction Genes and Development. 12: 2144-2152. PMID 9679059 DOI: 10.1101/Gad.12.14.2144 |
0.64 |
|
1998 |
Lo RS, Chen YG, Shi Y, Pavletich NP, Massagué J. The L3 loop: A structural motif determining specific interactions between SMAD proteins and TGF-β receptors Embo Journal. 17: 996-1005. PMID 9463378 DOI: 10.1093/Emboj/17.4.996 |
0.605 |
|
1997 |
Kim YG, Shi Y, Berg JM, Chandrasegaran S. Site-specific cleavage of DNA-RNA hybrids by zinc finger/FokI cleavage domain fusions. Gene. 203: 43-9. PMID 9426005 DOI: 10.1016/S0378-1119(97)00489-7 |
0.554 |
|
1997 |
Shi Y, Hata A, Lo RS, Massagué J, Pavletich NP. A structural basis for mutational inactivation of the tumour suppressor Smad4 Nature. 388: 87-93. PMID 9214508 DOI: 10.1038/40431 |
0.659 |
|
1996 |
Shi Y, Berg JM. DNA unwinding induced by zinc finger protein binding. Biochemistry. 35: 3845-8. PMID 8620008 DOI: 10.1021/Bi952384P |
0.582 |
|
1996 |
Berg JM, Shi Y. The galvanization of biology: a growing appreciation for the roles of zinc. Science (New York, N.Y.). 271: 1081-5. PMID 8599083 DOI: 10.1126/Science.271.5252.1081 |
0.593 |
|
1995 |
Shi Y, Berg JM. A direct comparison of the properties of natural and designed zinc-finger proteins. Chemistry & Biology. 2: 83-9. PMID 9383408 DOI: 10.1016/1074-5521(95)90280-5 |
0.586 |
|
1995 |
Shi Y, Berg JM. Specific DNA-RNA hybrid binding by zinc finger proteins. Science (New York, N.Y.). 268: 282-4. PMID 7536342 DOI: 10.1126/Science.7536342 |
0.545 |
|
1993 |
Shi Y, Beger RD, Berg JM. Metal binding properties of single amino acid deletion mutants of zinc finger peptides: studies using cobalt(II) as a spectroscopic probe. Biophysical Journal. 64: 749-53. PMID 8471726 DOI: 10.1016/S0006-3495(93)81435-8 |
0.517 |
|
1991 |
Ruppel A, Xing Y, Dell R, Numrich P, Shi YE. Schistosoma mansoni and S. japonicum: decline of antibodies against diagnostic adult worm antigens (Sm31/32) following praziquantel treatment of mice. Tropical Medicine and Parasitology : Official Organ of Deutsche Tropenmedizinische Gesellschaft and of Deutsche Gesellschaft FüR Technische Zusammenarbeit (Gtz). 42: 325-31. PMID 1796226 |
0.353 |
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