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Tao Huan - Publications

Affiliations: 
2018- Chemistry University of British Columbia, Vancouver, Vancouver, BC, Canada 
Area:
Metabolomics, Mass Spectrometry
Website:
https://huan.chem.ubc.ca/
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61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Wang Y, Tang Z, Zhao T, Yang J, Zhang W, Li X, Huan T. BreathXplorer: Processing Online Breathomics Data Generated from Direct Analysis Using High-Resolution Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 39052287 DOI: 10.1021/jasms.4c00152  0.461
2024 Mohanty I, Mannochio-Russo H, Schweer JV, El Abiead Y, Bittremieux W, Xing S, Schmid R, Zuffa S, Vasquez F, Muti VB, Zemlin J, Tovar-Herrera OE, Moraïs S, Desai D, Amin S, ... ... Huan T, et al. The underappreciated diversity of bile acid modifications. Cell. PMID 38471500 DOI: 10.1016/j.cell.2024.02.019  0.451
2024 Zhang Z, Yu H, Wong-Ma E, Dokouhaki P, Mostafa A, Shavadia JS, Wu F, Huan T. Reducing Quantitative Uncertainty Caused by Data Processing in Untargeted Metabolomics. Analytical Chemistry. 96: 3727-3732. PMID 38395621 DOI: 10.1021/acs.analchem.3c04046  0.306
2023 Bittremieux W, Avalon NE, Thomas SP, Kakhkhorov SA, Aksenov AA, Gomes PWP, Aceves CM, Caraballo-Rodríguez AM, Gauglitz JM, Gerwick WH, Huan T, Jarmusch AK, Kaddurah-Daouk RF, Kang KB, Kim HW, et al. Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nature Communications. 14: 8488. PMID 38123557 DOI: 10.1038/s41467-023-44035-y  0.451
2023 Chen H, Fu Y, Han M, Han X, Hao L, Huan T, Huang L, Huang M, Ji Q, Jiang T, Jiang Y, Li L, Li L, Liang X, Lih M, et al. Meeting Report on the 3rd Chinese American Society for Mass Spectrometry Conference-Advancing Biological and Pharmaceutical Mass Spectrometry. Biomedical Chromatography : Bmc. e5795. PMID 38071756 DOI: 10.1002/bmc.5795  0.44
2023 Zhao T, Xing S, Yu H, Huan T. Cleaning of Chimeric MS/MS Spectra for LC-MS/MS-Based Metabolomics. Analytical Chemistry. 95: 13018-13028. PMID 37603462 DOI: 10.1021/acs.analchem.3c00736  0.446
2023 Ross DH, Guo J, Bilbao A, Huan T, Smith RD, Zheng X. Evaluating Software Tools for Lipid Identification from Ion Mobility Spectrometry-Mass Spectrometry Lipidomics Data. Molecules (Basel, Switzerland). 28. PMID 37110719 DOI: 10.3390/molecules28083483  0.445
2023 Chen Y, Ge Y, Han X, Hao L, Huan T, Li L, Li L, Li W, Liang X, Lin Y, Liu X, Liu Y, Ma S, Peng J, Shou W, et al. Meeting Report on the 2 Chinese American Society for Mass Spectrometry (CASMS) Conference Advancing Biological and Pharmaceutical Mass Spectrometry. Molecular & Cellular Proteomics : McP. 100559. PMID 37105363 DOI: 10.1016/j.mcpro.2023.100559  0.351
2023 Xing S, Shen S, Xu B, Li X, Huan T. BUDDY: molecular formula discovery via bottom-up MS/MS interrogation. Nature Methods. PMID 37055660 DOI: 10.1038/s41592-023-01850-x  0.468
2023 Guo J, Huan T. Mechanistic Understanding of the Discrepancies between Common Peak Picking Algorithms in Liquid Chromatography-Mass Spectrometry-Based Metabolomics. Analytical Chemistry. PMID 36972195 DOI: 10.1021/acs.analchem.2c04887  0.39
2022 Guo J, Yu H, Xing S, Huan T. Addressing big data challenges in mass spectrometry-based metabolomics. Chemical Communications (Cambridge, England). PMID 35997016 DOI: 10.1039/d2cc03598g  0.442
2022 Yu H, Huan T. MAFFIN: Metabolomics Sample Normalization Using Maximal Density Fold Change with High-Quality Metabolic Features and Corrected Signal Intensities. Bioinformatics (Oxford, England). PMID 35639662 DOI: 10.1093/bioinformatics/btac355  0.382
2022 Treen DGC, Wang M, Xing S, Louie KB, Huan T, Dorrestein PC, Northen TR, Bowen BP. SIMILE enables alignment of tandem mass spectra with statistical significance. Nature Communications. 13: 2510. PMID 35523965 DOI: 10.1038/s41467-022-30118-9  0.32
2022 Guo J, Shen S, Liu M, Wang C, Low B, Chen Y, Hu Y, Xing S, Yu H, Gao Y, Fang M, Huan T. JPA: Joint Metabolic Feature Extraction Increases the Depth of Chemical Coverage for LC-MS-Based Metabolomics and Exposomics. Metabolites. 12. PMID 35323655 DOI: 10.3390/metabo12030212  0.46
2022 Xing S, Huan T. Radical fragment ions in collision-induced dissociation-based tandem mass spectrometry. Analytica Chimica Acta. 1200: 339613. PMID 35256147 DOI: 10.1016/j.aca.2022.339613  0.326
2022 Yu H, Huan T. Comprehensive assessment of the diminished statistical power caused by nonlinear electrospray ionization responses in mass spectrometry-based metabolomics. Analytica Chimica Acta. 1200: 339614. PMID 35256134 DOI: 10.1016/j.aca.2022.339614  0.358
2022 Guo J, Shen S, Huan T. Paramounter: Direct Measurement of Universal Parameters To Process Metabolomics Data in a "White Box". Analytical Chemistry. 94: 4260-4268. PMID 35245044 DOI: 10.1021/acs.analchem.1c04758  0.388
2021 Guo J, Shen S, Xing S, Chen Y, Chen F, Porter EM, Yu H, Huan T. EVA: Evaluation of Metabolic Feature Fidelity Using a Deep Learning Model Trained With Over 25000 Extracted Ion Chromatograms. Analytical Chemistry. PMID 34455775 DOI: 10.1021/acs.analchem.1c01309  0.427
2021 Guo J, Shen S, Xing S, Yu H, Huan T. ISFrag: De Novo Recognition of In-Source Fragments for Liquid Chromatography-Mass Spectrometry Data. Analytical Chemistry. 93: 10243-10250. PMID 34270210 DOI: 10.1021/acs.analchem.1c01644  0.437
2021 Yu H, Chen Y, Huan T. Computational Variation: An Underinvestigated Quantitative Variability Caused by Automated Data Processing in Untargeted Metabolomics. Analytical Chemistry. PMID 34132520 DOI: 10.1021/acs.analchem.0c03381  0.339
2021 Chen Y, Guo J, Xing S, Yu H, Huan T. Global-Scale Metabolomic Profiling of Human Hair for Simultaneous Monitoring of Endogenous Metabolome, Short- and Long-Term Exposome. Frontiers in Chemistry. 9: 674265. PMID 34055742 DOI: 10.3389/fchem.2021.674265  0.351
2021 Huang W, Wang X, Chen D, Xu EG, Luo X, Zeng J, Huan T, Li L, Wang Y. Toxicity mechanisms of polystyrene microplastics in marine mussels revealed by high-coverage quantitative metabolomics using chemical isotope labeling liquid chromatography mass spectrometry. Journal of Hazardous Materials. 417: 126003. PMID 33992921 DOI: 10.1016/j.jhazmat.2021.126003  0.469
2021 Xing S, Jiao Y, Salehzadeh M, Soma KK, Huan T. SteroidXtract: Deep Learning-Based Pattern Recognition Enables Comprehensive and Rapid Extraction of Steroid-Like Metabolic Features for Automated Biology-Driven Metabolomics. Analytical Chemistry. 93: 5735-5743. PMID 33784068 DOI: 10.1021/acs.analchem.0c04834  0.52
2021 Xing S, Yu H, Liu M, Jia Q, Sun Z, Fang M, Huan T. Recognizing Contamination Fragment Ions in Liquid Chromatography-Tandem Mass Spectrometry Data. Journal of the American Society For Mass Spectrometry. PMID 33739814 DOI: 10.1021/jasms.0c00478  0.414
2021 Guo J, Shen S, Xing S, Huan T. DaDIA: Hybridizing Data-Dependent and Data-Independent Acquisition Modes for Generating High-Quality Metabolomic Data. Analytical Chemistry. PMID 33465307 DOI: 10.1021/acs.analchem.0c05022  0.501
2021 Yu H, Huan T. Patterned Signal Ratio Biases in Mass Spectrometry-Based Quantitative Metabolomics. Analytical Chemistry. 93: 2254-2262. PMID 33400486 DOI: 10.1021/acs.analchem.0c04113  0.413
2021 Chen Y, Guo J, Xing S, Yu H, Huan T. Global-Scale Metabolomic Profiling of Human Hair for Simultaneous Monitoring of Endogenous Metabolome, Short- and Long-Term Exposome Frontiers in Chemistry. 9. DOI: 10.3389/fchem.2021.674265  0.351
2020 Palermo A, Huan T, Rinehart D, Rinschen MM, Li S, O'Donnell VB, Fahy E, Xue J, Subramaniam S, Benton HP, Siuzdak G. Cloud-based archived metabolomics data: A resource for in-source fragmentation/annotation, meta-analysis and systems biology. Analytical Science Advances. 1: 70-80. PMID 35190800 DOI: 10.1002/ansa.202000042  0.612
2020 Guo J, Huan T. Evaluation of significant features discovered from different data acquisition modes in mass spectrometry-based untargeted metabolomics. Analytica Chimica Acta. 1137: 37-46. PMID 33153607 DOI: 10.1016/J.Aca.2020.08.065  0.445
2020 Xing S, Hu Y, Yin Z, Liu M, Tang X, Fang M, Huan T. Retrieving and Utilizing Hypothetical Neutral Losses from Tandem Mass Spectra for Spectral Similarity Analysis and Unknown Metabolite Annotation. Analytical Chemistry. PMID 33076659 DOI: 10.1021/acs.analchem.0c02521  0.481
2020 Guo J, Huan T. Comparison of Full-Scan, Data-Dependent, and Data-Independent Acquisition Modes in Liquid Chromatography-Mass Spectrometry Based Untargeted Metabolomics. Analytical Chemistry. 92: 8072-8080. PMID 32401506 DOI: 10.1021/Acs.Analchem.9B05135  0.503
2020 Yu H, Xing S, Nierves L, Lange PF, Huan T. Implementing quality control-based signal calibration in mass spectrometry-based metabolomics to overcome fold-change compression caused by nonlinear ESI responses. Analytical Chemistry. PMID 32319750 DOI: 10.1021/Acs.Analchem.0C00246  0.501
2020 Yang JJ, Han Y, Mah CH, Wanjaya E, Peng B, Xu TF, Liu M, Huan T, Fang ML. Streamlined MRM method transfer between instruments assisted with HRMS matching and retention-time prediction. Analytica Chimica Acta. 1100: 88-96. PMID 31987156 DOI: 10.1016/J.Aca.2019.12.002  0.533
2020 Li L, Zheng X, Zhou Q, Villanueva N, Nian W, Liu X, Huan T. Metabolomics-Based Discovery of Molecular Signatures for Triple Negative Breast Cancer in Asian Female Population. Scientific Reports. 10: 370. PMID 31941951 DOI: 10.1038/S41598-019-57068-5  0.442
2019 Hu Y, Cai B, Huan T. Enhancing metabolome coverage in data-dependent LC-MS/MS analysis through an integrated feature extraction strategy. Analytical Chemistry. PMID 31626534 DOI: 10.1021/Acs.Analchem.9B02980  0.558
2019 Jia S, Xu T, Huan T, Chong M, Liu M, Fang W, Fang M. Chemical Isotope Labeling Exposome (CIL-EXPOSOME): One High-throughput Platform for Human Urinary Global Exposome Characterization. Environmental Science & Technology. PMID 30943026 DOI: 10.1021/Acs.Est.9B00285  0.511
2018 Lee CC, Hsieh YJ, Chen SW, Fu SH, Hsu CW, Wu CC, Han W, Li Y, Huan T, Chang YS, Yu JS, Li L, Chang CH, Chen YT. Bretschneider solution-induced alterations in the urine metabolome in cardiac surgery patients. Scientific Reports. 8: 17774. PMID 30538262 DOI: 10.1038/S41598-018-35631-W  0.581
2018 Sapkota S, Huan T, Tran T, Zheng J, Camicioli R, Li L, Dixon RA. Alzheimer's Biomarkers From Multiple Modalities Selectively Discriminate Clinical Status: Relative Importance of Salivary Metabolomics Panels, Genetic, Lifestyle, Cognitive, Functional Health and Demographic Risk Markers. Frontiers in Aging Neuroscience. 10: 296. PMID 30333744 DOI: 10.3389/Fnagi.2018.00296  0.357
2018 Huan T, Tran T, Zheng J, Sapkota S, MacDonald SW, Camicioli R, Dixon RA, Li L. Metabolomics Analyses of Saliva Detect Novel Biomarkers of Alzheimer's Disease. Journal of Alzheimer's Disease : Jad. PMID 30175979 DOI: 10.3233/Jad-180711  0.4
2018 Huan T, Palermo A, Ivanisevic J, Rinehart D, Edler D, Phommavongsay T, Benton HP, Guijas C, Domingo-Almenara X, Warth B, Siuzdak G. Autonomous Multimodal Metabolomics Data Integration for Comprehensive Pathway Analysis and Systems Biology. Analytical Chemistry. 90: 8396-8403. PMID 29893550 DOI: 10.1021/Acs.Analchem.8B00875  0.777
2018 Forsberg EM, Huan T, Rinehart D, Benton HP, Warth B, Hilmers B, Siuzdak G. Data processing, multi-omic pathway mapping, and metabolite activity analysis using XCMS Online. Nature Protocols. 13: 633-651. PMID 29494574 DOI: 10.1038/Nprot.2017.151  0.681
2018 Guijas C, Montenegro-Burke JR, Domingo-Almenara X, Palermo A, Warth B, Hermann G, Koellensperger G, Huan T, Uritboonthai W, Aisporna AE, Wolan DW, Spilker ME, Benton HP, Siuzdak G. METLIN: A Technology Platform for Identifying Knowns and Unknowns. Analytical Chemistry. PMID 29381867 DOI: 10.1021/Acs.Analchem.7B04424  0.763
2018 Warth B, Raffeiner P, Granados A, Huan T, Fang M, Forsberg EM, Benton HP, Goetz L, Johnson CH, Siuzdak G. Metabolomics Reveals that Dietary Xenoestrogens Alter Cellular Metabolism Induced by Palbociclib/Letrozole Combination Cancer Therapy. Cell Chemical Biology. PMID 29337187 DOI: 10.1016/J.Chembiol.2017.12.010  0.574
2017 Warth B, Spangler S, Fang M, Johnson CH, Forsberg EM, Granados A, Martin RL, Domingo-Almenara X, Huan T, Rinehart D, Montenegro-Burke JR, Hilmers B, Aisporna AE, Hoang LT, Uritboonthai W, et al. Exposome-Scale Investigations Guided by Global Metabolomics, Pathway Analysis, and Cognitive Computing. Analytical Chemistry. PMID 28945073 DOI: 10.1021/Acs.Analchem.7B02759  0.549
2017 Huan T, Forsberg EM, Rinehart D, Johnson CH, Ivanisevic J, Benton HP, Fang M, Aisporna A, Hilmers B, Poole FL, Thorgersen MP, Adams MWW, Krantz G, Fields MW, Robbins PD, et al. Systems biology guided by XCMS Online metabolomics. Nature Methods. 14: 461-462. PMID 28448069 DOI: 10.1038/Nmeth.4260  0.515
2016 Montenegro-Burke JR, Aisporna AE, Benton HP, Rinehart D, Fang M, Huan T, Warth B, Forsberg EM, Abe BT, Ivanisevic J, Teyton L, Lairson LL, Siuzdak G. Data Streaming for Metabolomics: Accelerating Data Processing and Analysis from Days to Minutes. Analytical Chemistry. PMID 27983788 DOI: 10.1021/Acs.Analchem.6B03890  0.585
2016 Huan T, Xian JW, Leung WN, Li L, Chan CW. Cerebrospinal Fluid Metabolomics After Natural Product Treatment in an Experimental Model of Cerebral Ischemia. Omics : a Journal of Integrative Biology. PMID 27732148 DOI: 10.1089/Omi.2016.0112  0.53
2016 Huan T, Troyer DA, Li L. Metabolite Analysis and Histology on the Exact Same Tissue: Comprehensive Metabolomic Profiling and Metabolic Classification of Prostate Cancer. Scientific Reports. 6: 32272. PMID 27578275 DOI: 10.1038/Srep32272  0.563
2016 Montenegro Burke JR, Phommavongsay T, Aisporna AE, Huan T, Rinehart D, Forsberg EM, Poole FL, Thorgersen MP, Adams MW, Krantz G, Fields MW, Robbins PD, Niedernhofer LJ, Lairson LL, Benton HP, et al. Smartphone Analytics: Expanding the Lab into the Cloud. Analytical Chemistry. PMID 27560777 DOI: 10.1021/Acs.Analchem.6B02676  0.604
2016 Luo X, Zhao S, Huan T, Sun D, Friis RM, Schultz MC, Li L. High-Performance Chemical Isotope Labeling Liquid Chromatography Mass Spectrometry for Profiling the Metabolomic Reprogramming Elicited by Ammonium Limitation in Yeast. Journal of Proteome Research. PMID 26947805 DOI: 10.1021/Acs.Jproteome.6B00070  0.612
2016 Su X, Wang N, Chen D, Li Y, Lu Y, Huan T, Xu W, Li L, Li L. Dansylation isotope labeling liquid chromatography mass spectrometry for parallel profiling of human urinary and fecal submetabolomes. Analytica Chimica Acta. 903: 100-9. PMID 26709303 DOI: 10.1016/J.Aca.2015.11.027  0.599
2015 Huan T, Tang C, Li R, Shi Y, Lin G, Li L. MyCompoundID MS/MS Search: Metabolite Identification Using a Library of Predicted Fragment-Ion-Spectra of 383,830 Possible Human Metabolites. Analytical Chemistry. PMID 26415007 DOI: 10.1021/Acs.Analchem.5B03126  0.618
2015 Huan T, Wu Y, Tang C, Lin G, Li L. DnsID in MyCompoundID for Rapid Identification of Dansylated Amine- and Phenol-Containing Metabolites in LC-MS-Based Metabolomics. Analytical Chemistry. PMID 26327437 DOI: 10.1021/Acs.Analchem.5B02282  0.647
2015 Huan T, Li L. Quantitative Metabolome Analysis Based on Chromatographic Peak Reconstruction in Chemical Isotope Labeling Liquid Chromatography Mass Spectrometry. Analytical Chemistry. 87: 7011-6. PMID 26086729 DOI: 10.1021/Acs.Analchem.5B01434  0.585
2015 Zhou R, Huan T, Li L. Development of versatile isotopic labeling reagents for profiling the amine submetabolome by liquid chromatography-mass spectrometry. Analytica Chimica Acta. 881: 107-16. PMID 26041526 DOI: 10.1016/J.Aca.2015.04.021  0.607
2015 Huan T, Li L. Counting missing values in a metabolite-intensity data set for measuring the analytical performance of a metabolomics platform. Analytical Chemistry. 87: 1306-13. PMID 25496403 DOI: 10.1021/Ac5039994  0.598
2015 Xu W, Chen D, Wang N, Zhang T, Zhou R, Huan T, Lu Y, Su X, Xie Q, Li L, Li L. Development of high-performance chemical isotope labeling LC-MS for profiling the human fecal metabolome. Analytical Chemistry. 87: 829-36. PMID 25486321 DOI: 10.1021/Ac503619Q  0.636
2015 Sapkota S, Tran T, Huan T, Lechelt K, MacDonald S, Camicioli R, Li L, Dixon RA. P3-090: Metabolomics analyses of salivary samples discriminate normal aging, mild cognitive impairment, and Alzheimer's disease groups and produce biomarkers predictive of neurocognitive performance Alzheimer's & Dementia. 11: P654-P654. DOI: 10.1016/J.Jalz.2015.06.957  0.362
2014 Zhou R, Tseng CL, Huan T, Li L. IsoMS: automated processing of LC-MS data generated by a chemical isotope labeling metabolomics platform. Analytical Chemistry. 86: 4675-9. PMID 24766305 DOI: 10.1021/Ac5009089  0.61
2014 Friis RM, Glaves JP, Huan T, Li L, Sykes BD, Schultz MC. Rewiring AMPK and mitochondrial retrograde signaling for metabolic control of aging and histone acetylation in respiratory-defective cells. Cell Reports. 7: 565-74. PMID 24726357 DOI: 10.1016/J.Celrep.2014.03.029  0.408
2013 Li L, Li R, Zhou J, Zuniga A, Stanislaus AE, Wu Y, Huan T, Zheng J, Shi Y, Wishart DS, Lin G. MyCompoundID: using an evidence-based metabolome library for metabolite identification. Analytical Chemistry. 85: 3401-8. PMID 23373753 DOI: 10.1021/Ac400099B  0.685
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