| Year |
Citation |
Score |
| 2023 |
Hadjeras L, Heiniger B, Maaß S, Scheuer R, Gelhausen R, Azarderakhsh S, Barth-Weber S, Backofen R, Becher D, Ahrens CH, Sharma CM, Evguenieva-Hackenberg E. Unraveling the small proteome of the plant symbiont by ribosome profiling and proteogenomics. Microlife. 4: uqad012. PMID 37223733 DOI: 10.1093/femsml/uqad012 |
0.374 |
|
| 2021 |
Ahrens CH, Wade JT, Champion MM, Langer JD. A Practical Guide to Small Protein Discovery and Characterization Using Mass Spectrometry. Journal of Bacteriology. 204: e0035321. PMID 34748388 DOI: 10.1128/JB.00353-21 |
0.343 |
|
| 2021 |
Fuchs S, Kucklick M, Lehmann E, Beckmann A, Wilkens M, Kolte B, Mustafayeva A, Ludwig T, Diwo M, Wissing J, Jänsch L, Ahrens CH, Ignatova Z, Engelmann S. Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach. Plos Genetics. 17: e1009585. PMID 34061833 DOI: 10.1371/journal.pgen.1009585 |
0.304 |
|
| 2020 |
Bartel J, Varadarajan AR, Sura T, Ahrens CH, Maaß S, Becher D. Optimized Proteomics Workflow for the Detection of Small Proteins. Journal of Proteome Research. 19: 4004-4018. PMID 32812434 DOI: 10.1021/acs.jproteome.0c00286 |
0.32 |
|
| 2017 |
Omasits U, Varadarajan AR, Schmid M, Goetze S, Melidis D, Bourqui M, Nikolayeva O, Québatte M, Patrignani A, Dehio C, Frey JE, Robinson MD, Wollscheid B, Ahrens CH. An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics. Genome Research. PMID 29141959 DOI: 10.1101/gr.218255.116 |
0.314 |
|
| 2014 |
Qeli E, Omasits U, Goetze S, Stekhoven DJ, Frey JE, Basler K, Wollscheid B, Brunner E, Ahrens CH. Improved prediction of peptide detectability for targeted proteomics using a rank-based algorithm and organism-specific data. Journal of Proteomics. 108: 269-83. PMID 24878426 DOI: 10.1016/j.jprot.2014.05.011 |
0.352 |
|
| 2013 |
Handke B, Poernbacher I, Goetze S, Ahrens CH, Omasits U, Marty F, Simigdala N, Meyer I, Wollscheid B, Brunner E, Hafen E, Lehner CF. The hemolymph proteome of fed and starved Drosophila larvae. Plos One. 8: e67208. PMID 23840627 DOI: 10.1371/Journal.Pone.0067208 |
0.32 |
|
| 2012 |
Jones AM, Aebersold R, Ahrens CH, Apweiler R, Baerenfaller K, Baker M, Bendixen E, Briggs S, Brownridge P, Brunner E, Daube M, Deutsch EW, Grossniklaus U, Heazlewood J, Hengartner MO, et al. The HUPO initiative on Model Organism Proteomes, iMOP. Proteomics. 12: 340-5. PMID 22290800 DOI: 10.1002/Pmic.201290014 |
0.402 |
|
| 2010 |
Ahrens CH, Brunner E, Qeli E, Basler K, Aebersold R. Generating and navigating proteome maps using mass spectrometry. Nature Reviews. Molecular Cell Biology. 11: 789-801. PMID 20944666 DOI: 10.1038/Nrm2973 |
0.33 |
|
| 2010 |
Ahrens CH, Schrimpf SP, Brunner E, Aebersold R. Model organism proteomics. Journal of Proteomics. 73: 2051-3. PMID 20832510 DOI: 10.1016/J.Jprot.2010.09.001 |
0.408 |
|
| 2010 |
Gerster S, Qeli E, Ahrens CH, Bühlmann P. Protein and gene model inference based on statistical modeling in k-partite graphs. Proceedings of the National Academy of Sciences of the United States of America. 107: 12101-6. PMID 20562346 DOI: 10.1073/pnas.0907654107 |
0.328 |
|
| 2009 |
Grobei MA, Qeli E, Brunner E, Rehrauer H, Zhang R, Roschitzki B, Basler K, Ahrens CH, Grossniklaus U. Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function. Genome Research. 19: 1786-800. PMID 19546170 DOI: 10.1101/Gr.089060.108 |
0.305 |
|
| 2009 |
Schrimpf SP, Weiss M, Reiter L, Ahrens CH, Jovanovic M, Malmström J, Brunner E, Mohanty S, Lercher MJ, Hunziker PE, Aebersold R, von Mering C, Hengartner MO. Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes. Plos Biology. 7: e48. PMID 19260763 DOI: 10.1371/journal.pbio.1000048 |
0.31 |
|
| 2007 |
Ahrens CH, Brunner E, Hafen E, Aebersold R, Basler K. A proteome catalog of Drosophila melanogaster: an essential resource for targeted quantitative proteomics. Fly. 1: 182-6. PMID 18820430 DOI: 10.4161/Fly.4532 |
0.379 |
|
| 2007 |
Potthast F, Gerrits B, Häkkinen J, Rutishauser D, Ahrens CH, Roschitzki B, Baerenfaller K, Munton RP, Walther P, Gehrig P, Seif P, Seeberger PH, Schlapbach R. The Mass Distance Fingerprint: a statistical framework for de novo detection of predominant modifications using high-accuracy mass spectrometry. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 854: 173-82. PMID 17513179 DOI: 10.1016/J.Jchromb.2007.04.020 |
0.403 |
|
| 2007 |
Brunner E, Ahrens CH, Mohanty S, Baetschmann H, Loevenich S, Potthast F, Deutsch EW, Panse C, de Lichtenberg U, Rinner O, Lee H, Pedrioli PG, Malmstrom J, Koehler K, Schrimpf S, et al. A high-quality catalog of the Drosophila melanogaster proteome. Nature Biotechnology. 25: 576-83. PMID 17450130 DOI: 10.1038/Nbt1300 |
0.399 |
|
| 2004 |
Kristensen DB, Brønd JC, Nielsen PA, Andersen JR, Sørensen OT, Jørgensen V, Budin K, Matthiesen J, Venø P, Jespersen HM, Ahrens CH, Schandorff S, Ruhoff PT, Wisniewski JR, Bennett KL, et al. Experimental Peptide Identification Repository (EPIR): an integrated peptide-centric platform for validation and mining of tandem mass spectrometry data. Molecular & Cellular Proteomics : McP. 3: 1023-38. PMID 15284337 DOI: 10.1074/mcp.T400004-MCP200 |
0.335 |
|
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