Migun Shakya

Dartmouth College, Hanover, NH, United States 
microbe, evolution
"Migun Shakya"


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Mircea Podar grad student
Christopher W. Schadt grad student 2013
 (Coadvisee with Mircea Podar)
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Xiaoli L, Hagey JV, Park DJ, et al. (2022) Benchmark datasets for SARS-CoV-2 surveillance bioinformatics. Peerj. 10: e13821
Shakya M, Ahmed SA, Davenport KW, et al. (2020) Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life. Scientific Reports. 10: 1723
Shakya M, Lo CC, Chain PSG. (2019) Advances and Challenges in Metatranscriptomic Analysis. Frontiers in Genetics. 10: 904
Kogay R, Neely TB, Birnbaum DP, et al. (2019) Machine-learning classification suggests that many alphaproteobacterial prophages may instead be gene transfer agents. Genome Biology and Evolution
Domman D, Ruis C, Dorman MJ, et al. (2019) Novel Insights Into the Spread of Enteric Pathogens Using Genomics. The Journal of Infectious Diseases
Connor R, Brister R, Buchmann JP, et al. (2019) NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements. Genes. 10
Shakya M, Soucy SM, Zhaxybayeva O. (2017) Insights into origin and evolution of α-proteobacterial gene transfer agents. Virus Evolution. 3: vex036
Hynes AP, Shakya M, Mercer RG, et al. (2016) Functional and evolutionary characterization of a gene transfer agent's multi-locus "genome". Molecular Biology and Evolution
D'Amore R, Ijaz UZ, Schirmer M, et al. (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. Bmc Genomics. 17: 55
Shakya M, Gottel N, Castro H, et al. (2013) A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees. Plos One. 8: e76382
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