Ruth E. Ley, Ph.D. - Publications

2001 University of Colorado, Boulder, Boulder, CO, United States 
Microbial ecology, Mycorrhizae

89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 de la Cuesta-Zuluaga J, Spector TD, Youngblut ND, Ley RE. Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut. Msystems. 6. PMID 33563787 DOI: 10.1128/mSystems.00939-20  0.309
2020 Johnson EL, Heaver SL, Waters JL, Kim BI, Bretin A, Goodman AL, Gewirtz AT, Worgall TS, Ley RE. Sphingolipids produced by gut bacteria enter host metabolic pathways impacting ceramide levels. Nature Communications. 11: 2471. PMID 32424203 DOI: 10.1038/S41467-020-16274-W  0.336
2020 Ruaud A, Esquivel-Elizondo S, de la Cuesta-Zuluaga J, Waters JL, Angenent LT, Youngblut ND, Ley RE. Syntrophy via Interspecies H Transfer between and Underlies Their Global Cooccurrence in the Human Gut. Mbio. 11. PMID 32019803 DOI: 10.1128/Mbio.03235-19  0.328
2019 Tran HQ, Ley RE, Gewirtz AT, Chassaing B. Flagellin-elicited adaptive immunity suppresses flagellated microbiota and vaccinates against chronic inflammatory diseases. Nature Communications. 10: 5650. PMID 31827095 DOI: 10.1038/S41467-019-13538-Y  0.304
2019 de la Cuesta-Zuluaga J, Ley RE, Youngblut ND. Struo: a pipeline for building custom databases for common metagenome profilers. Bioinformatics (Oxford, England). PMID 31778148 DOI: 10.1093/Bioinformatics/Btz899  0.364
2019 Waters JL, Ley RE. The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health. Bmc Biology. 17: 83. PMID 31660948 DOI: 10.1186/S12915-019-0699-4  0.351
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Ley R, et al. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31399723 DOI: 10.1038/S41587-019-0252-6  0.61
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Ley R, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31341288 DOI: 10.1038/S41587-019-0209-9  0.604
2019 Youngblut ND, Reischer GH, Walters W, Schuster N, Walzer C, Stalder G, Ley RE, Farnleitner AH. Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades. Nature Communications. 10: 2200. PMID 31097702 DOI: 10.1038/S41467-019-10191-3  0.397
2019 Poole AC, Goodrich JK, Youngblut ND, Luque GG, Ruaud A, Sutter JL, Waters JL, Shi Q, El-Hadidi M, Johnson LM, Bar HY, Huson DH, Booth JG, Ley RE. Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes. Cell Host & Microbe. 25: 553-564.e7. PMID 30974084 DOI: 10.1016/J.Chom.2019.03.001  0.357
2019 Moreno-Gallego JL, Chou SP, Di Rienzi SC, Goodrich JK, Spector TD, Bell JT, Youngblut ND, Hewson I, Reyes A, Ley RE. Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins. Cell Host & Microbe. 25: 261-272.e5. PMID 30763537 DOI: 10.1016/J.Chom.2019.01.019  0.314
2018 Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, et al. Publisher Correction: Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. PMID 29440750 DOI: 10.1038/S41564-018-0114-X  0.323
2018 Heaver SL, Johnson EL, Ley RE. Sphingolipids in host-microbial interactions. Current Opinion in Microbiology. 43: 92-99. PMID 29328957 DOI: 10.1016/J.Mib.2017.12.011  0.348
2018 Costea PI, Hildebrand F, Manimozhiyan A, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, et al. Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. 3: 8-16. PMID 29255284 DOI: 10.1038/S41564-017-0072-8  0.354
2017 Goodrich JK, Davenport ER, Clark AG, Ley RE. The Relationship Between the Human Genome and Microbiome Comes into View. Annual Review of Genetics. PMID 28934590 DOI: 10.1146/Annurev-Genet-110711-155532  0.373
2016 Johnson EL, Heaver SL, Walters WA, Ley RE. Microbiome and metabolic disease: revisiting the bacterial phylum Bacteroidetes. Journal of Molecular Medicine (Berlin, Germany). PMID 27900395 DOI: 10.1007/S00109-016-1492-2  0.369
2016 Davenport ER, Goodrich JK, Bell JT, Spector TD, Ley RE, Clark AG. ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins. Bmc Genomics. 17: 941. PMID 27871240 DOI: 10.1186/S12864-016-3290-1  0.329
2016 Beaumont M, Goodrich JK, Jackson MA, Yet I, Davenport ER, Vieira-Silva S, Debelius J, Pallister T, Mangino M, Raes J, Knight R, Clark AG, Ley RE, Spector TD, Bell JT. Heritable components of the human fecal microbiome are associated with visceral fat. Genome Biology. 17: 189. PMID 27666579 DOI: 10.1186/S13059-016-1052-7  0.302
2016 Ley RE, Gewirtz AT. Corralling Colonic Flagellated Microbiota. The New England Journal of Medicine. 375: 85-7. PMID 27406353 DOI: 10.1056/Nejmcibr1604801  0.304
2016 Goodrich JK, Davenport ER, Beaumont M, Jackson MA, Knight R, Ober C, Spector TD, Bell JT, Clark AG, Ley RE. Genetic Determinants of the Gut Microbiome in UK Twins. Cell Host & Microbe. 19: 731-43. PMID 27173935 DOI: 10.1016/J.Chom.2016.04.017  0.353
2016 Goodrich JK, Davenport ER, Waters JL, Clark AG, Ley RE. Cross-species comparisons of host genetic associations with the microbiome. Science (New York, N.Y.). 352: 532-5. PMID 27126034 DOI: 10.1126/Science.Aad9379  0.384
2016 Jackson MA, Jeffery IB, Beaumont M, Bell JT, Clark AG, Ley RE, O'Toole PW, Spector TD, Steves CJ. Erratum to: signatures of early frailty in the gut microbiota. Genome Medicine. 8: 21. PMID 26888550 DOI: 10.1186/S13073-016-0275-2  0.303
2016 Ley RE. Gut microbiota in 2015: Prevotella in the gut: choose carefully. Nature Reviews. Gastroenterology & Hepatology. 13: 69-70. PMID 26828918 DOI: 10.1038/Nrgastro.2016.4  0.369
2015 Friedman ES, McPhillips LE, Werner JJ, Poole AC, Ley RE, Walter MT, Angenent LT. Methane Emission in a Specific Riparian-Zone Sediment Decreased with Bioelectrochemical Manipulation and Corresponded to the Microbial Community Dynamics. Frontiers in Microbiology. 6: 1523. PMID 26793170 DOI: 10.3389/Fmicb.2015.01523  0.325
2015 Jin Z, Di Rienzi SC, Janzon A, Werner JJ, Angenent LT, Dangl JL, Fowler DM, Ley RE. Novel rhizosphere soil alleles for the enzyme ACC deaminase queried functionally with an in-vivo competition assay. Applied and Environmental Microbiology. PMID 26637602 DOI: 10.1128/Aem.03074-15  0.357
2015 Vierheilig J, Savio D, Ley RE, Mach RL, Farnleitner AH, Reischer GH. Potential applications of next generation DNA sequencing of 16S rRNA gene amplicons in microbial water quality monitoring. Water Science and Technology : a Journal of the International Association On Water Pollution Research. 72: 1962-72. PMID 26606090 DOI: 10.2166/Wst.2015.407  0.325
2015 Blekhman R, Goodrich JK, Huang K, Sun Q, Bukowski R, Bell JT, Spector TD, Keinan A, Ley RE, Gevers D, Clark AG. Host genetic variation impacts microbiome composition across human body sites. Genome Biology. 16: 191. PMID 26374288 DOI: 10.1186/S13059-015-0759-1  0.378
2015 Hacquard S, Garrido-Oter R, González A, Spaepen S, Ackermann G, Lebeis S, McHardy AC, Dangl JL, Knight R, Ley R, Schulze-Lefert P. Microbiota and Host Nutrition across Plant and Animal Kingdoms. Cell Host & Microbe. 17: 603-616. PMID 25974302 DOI: 10.1016/J.Chom.2015.04.009  0.373
2015 Chassaing B, Koren O, Goodrich JK, Poole AC, Srinivasan S, Ley RE, Gewirtz AT. Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome. Nature. 519: 92-6. PMID 25731162 DOI: 10.1038/Nature14232  0.35
2015 Panke-Buisse K, Poole AC, Goodrich JK, Ley RE, Kao-Kniffin J. Selection on soil microbiomes reveals reproducible impacts on plant function. The Isme Journal. 9: 980-9. PMID 25350154 DOI: 10.1038/Ismej.2014.196  0.342
2014 Kumar H, Lund R, Laiho A, Lundelin K, Ley RE, Isolauri E, Salminen S. Gut microbiota as an epigenetic regulator: pilot study based on whole-genome methylation analysis. Mbio. 5. PMID 25516615 DOI: 10.1128/Mbio.02113-14  0.346
2014 Goodrich JK, Waters JL, Poole AC, Sutter JL, Koren O, Blekhman R, Beaumont M, Van Treuren W, Knight R, Bell JT, Spector TD, Clark AG, Ley RE. Human genetics shape the gut microbiome. Cell. 159: 789-99. PMID 25417156 DOI: 10.1016/J.Cell.2014.09.053  0.361
2014 Huttenhower C, Knight R, Brown CT, Caporaso JG, Clemente JC, Gevers D, Franzosa EA, Kelley ST, Knights D, Ley RE, Mahurkar A, Ravel J, White O. Advancing the microbiome research community. Cell. 159: 227-30. PMID 25303518 DOI: 10.1016/J.Cell.2014.09.022  0.307
2014 Leifer CA, McConkey C, Li S, Chassaing B, Gewirtz AT, Ley RE. Linking genetic variation in human Toll-like receptor 5 genes to the gut microbiome's potential to cause inflammation. Immunology Letters. 162: 3-9. PMID 25284610 DOI: 10.1016/J.Imlet.2014.07.017  0.334
2014 Perez-Muñoz ME, Bergstrom K, Peng V, Schmaltz R, Jimenez-Cardona R, Marsteller N, McGee S, Clavel T, Ley R, Fu J, Xia L, Peterson DA. Discordance between changes in the gut microbiota and pathogenicity in a mouse model of spontaneous colitis. Gut Microbes. 5: 286-95. PMID 24662098 DOI: 10.4161/Gmic.28622  0.316
2014 Ley RE. Harnessing microbiota to kill a pathogen: the sweet tooth of Clostridium difficile. Nature Medicine. 20: 248-9. PMID 24603797 DOI: 10.1038/Nm.3494  0.326
2014 Chassaing B, Koren O, Carvalho FA, Ley RE, Gewirtz AT. AIEC pathobiont instigates chronic colitis in susceptible hosts by altering microbiota composition. Gut. 63: 1069-80. PMID 23896971 DOI: 10.1136/Gutjnl-2013-304909  0.322
2013 Petschow B, Doré J, Hibberd P, Dinan T, Reid G, Blaser M, Cani PD, Degnan FH, Foster J, Gibson G, Hutton J, Klaenhammer TR, Ley R, Nieuwdorp M, Pot B, et al. Probiotics, prebiotics, and the host microbiome: the science of translation. Annals of the New York Academy of Sciences. 1306: 1-17. PMID 24266656 DOI: 10.1111/Nyas.12303  0.318
2013 Peiffer JA, Ley RE. Exploring the maize rhizosphere microbiome in the field: A glimpse into a highly complex system. Communicative & Integrative Biology. 6: e25177. PMID 24265851 DOI: 10.4161/Cib.25177  0.343
2013 Cullender TC, Chassaing B, Janzon A, Kumar K, Muller CE, Werner JJ, Angenent LT, Bell ME, Hay AG, Peterson DA, Walter J, Vijay-Kumar M, Gewirtz AT, Ley RE. Innate and adaptive immunity interact to quench microbiome flagellar motility in the gut. Cell Host & Microbe. 14: 571-81. PMID 24237702 DOI: 10.1016/J.Chom.2013.10.009  0.336
2013 Di Rienzi SC, Sharon I, Wrighton KC, Koren O, Hug LA, Thomas BC, Goodrich JK, Bell JT, Spector TD, Banfield JF, Ley RE. The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria. Elife. 2: e01102. PMID 24137540 DOI: 10.7554/Elife.01102  0.346
2013 Peiffer JA, Spor A, Koren O, Jin Z, Tringe SG, Dangl JL, Buckler ES, Ley RE. Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proceedings of the National Academy of Sciences of the United States of America. 110: 6548-53. PMID 23576752 DOI: 10.1073/Pnas.1302837110  0.346
2013 Ley RE. Nutrition: When guests turn hostile. Nature. 494: 437-8. PMID 23446414 DOI: 10.1038/494437A  0.327
2013 Koren O, Knights D, Gonzalez A, Waldron L, Segata N, Knight R, Huttenhower C, Ley RE. A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets. Plos Computational Biology. 9: e1002863. PMID 23326225 DOI: 10.1371/Journal.Pcbi.1002863  0.348
2013 Rienzi SCD, Sharon I, Wrighton KC, Koren O, Hug LA, Thomas BC, Goodrich JK, Bell JT, Spector TD, Banfield JF, Ley RE. Author response: The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria Elife. DOI: 10.7554/Elife.01102.024  0.304
2012 Carvalho FA, Koren O, Goodrich JK, Johansson ME, Nalbantoglu I, Aitken JD, Su Y, Chassaing B, Walters WA, González A, Clemente JC, Cullender TC, Barnich N, Darfeuille-Michaud A, Vijay-Kumar M, ... ... Ley RE, et al. Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice. Cell Host & Microbe. 12: 139-52. PMID 22863420 DOI: 10.1016/J.Chom.2012.07.004  0.334
2012 Koren O, Goodrich JK, Cullender TC, Spor A, Laitinen K, Bäckhed HK, Gonzalez A, Werner JJ, Angenent LT, Knight R, Bäckhed F, Isolauri E, Salminen S, Ley RE. Host remodeling of the gut microbiome and metabolic changes during pregnancy. Cell. 150: 470-80. PMID 22863002 DOI: 10.1016/J.Cell.2012.07.008  0.303
2012 Lundberg DS, Lebeis SL, Paredes SH, Yourstone S, Gehring J, Malfatti S, Tremblay J, Engelbrektson A, Kunin V, del Rio TG, Edgar RC, Eickhorst T, Ley RE, Hugenholtz P, Tringe SG, et al. Defining the core Arabidopsis thaliana root microbiome. Nature. 488: 86-90. PMID 22859206 DOI: 10.1038/Nature11237  0.374
2012 Larsson E, Tremaroli V, Lee YS, Koren O, Nookaew I, Fricker A, Nielsen J, Ley RE, Bäckhed F. Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88. Gut. 61: 1124-31. PMID 22115825 DOI: 10.1136/Gutjnl-2011-301104  0.373
2012 Werner JJ, Koren O, Hugenholtz P, DeSantis TZ, Walters WA, Caporaso JG, Angenent LT, Knight R, Ley RE. Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. The Isme Journal. 6: 94-103. PMID 21716311 DOI: 10.1038/Ismej.2011.82  0.372
2012 Ravussin Y, Koren O, Spor A, LeDuc C, Gutman R, Stombaugh J, Knight R, Ley RE, Leibel RL. Responses of gut microbiota to diet composition and weight loss in lean and obese mice. Obesity (Silver Spring, Md.). 20: 738-47. PMID 21593810 DOI: 10.1038/Oby.2011.111  0.304
2011 Vaishnava S, Yamamoto M, Severson KM, Ruhn KA, Yu X, Koren O, Ley R, Wakeland EK, Hooper LV. The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine. Science (New York, N.Y.). 334: 255-8. PMID 21998396 DOI: 10.1126/Science.1209791  0.341
2011 Walter J, Ley R. The human gut microbiome: ecology and recent evolutionary changes. Annual Review of Microbiology. 65: 411-29. PMID 21682646 DOI: 10.1146/Annurev-Micro-090110-102830  0.379
2011 Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Ley RE, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/Nbt.1823  0.737
2011 Dominguez-Bello MG, Blaser MJ, Ley RE, Knight R. Development of the human gastrointestinal microbiota and insights from high-throughput sequencing. Gastroenterology. 140: 1713-9. PMID 21530737 DOI: 10.1053/J.Gastro.2011.02.011  0.374
2011 Spor A, Koren O, Ley R. Unravelling the effects of the environment and host genotype on the gut microbiome. Nature Reviews. Microbiology. 9: 279-90. PMID 21407244 DOI: 10.1038/Nrmicro2540  0.356
2011 Koren O, Spor A, Felin J, Fåk F, Stombaugh J, Tremaroli V, Behre CJ, Knight R, Fagerberg B, Ley RE, Bäckhed F. Human oral, gut, and plaque microbiota in patients with atherosclerosis. Proceedings of the National Academy of Sciences of the United States of America. 108: 4592-8. PMID 20937873 DOI: 10.1073/Pnas.1011383107  0.339
2011 Koenig JE, Spor A, Scalfone N, Fricker AD, Stombaugh J, Knight R, Angenent LT, Ley RE. Succession of microbial consortia in the developing infant gut microbiome. Proceedings of the National Academy of Sciences of the United States of America. 108: 4578-85. PMID 20668239 DOI: 10.1073/Pnas.1000081107  0.338
2010 Gilbert JA, Meyer F, Jansson J, Gordon J, Pace N, Tiedje J, Ley R, Fierer N, Field D, Kyrpides N, Glöckner FO, Klenk HP, Wommack KE, Glass E, Docherty K, et al. The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. Standards in Genomic Sciences. 3: 249-53. PMID 21304728 DOI: 10.4056/Aigs.1443528  0.316
2010 Kuczynski J, Costello EK, Nemergut DR, Zaneveld J, Lauber CL, Knights D, Koren O, Fierer N, Kelley ST, Ley RE, Gordon JI, Knight R. Direct sequencing of the human microbiome readily reveals community differences. Genome Biology. 11: 210. PMID 20441597 DOI: 10.1186/Gb-2010-11-5-210  0.745
2010 Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, et al. QIIME allows analysis of high-throughput community sequencing data. Nature Methods. 7: 335-6. PMID 20383131 DOI: 10.1038/Nmeth.F.303  0.663
2010 Ley RE. Obesity and the human microbiome. Current Opinion in Gastroenterology. 26: 5-11. PMID 19901833 DOI: 10.1097/Mog.0B013E328333D751  0.312
2010 Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Ley RE, et al. The “Minimum Information about an ENvironmental Sequence” (MIENS) specification Nature Precedings. 5: 1-1. DOI: 10.1038/Npre.2010.5252.1  0.664
2010 Goodrich-Blair H, Ané JM, Bever JD, Bordenstein SR, Bright M, Chaston JM, Clay K, Currie CR, Douglas AE, Gerardo N, Harrison MJ, Ley RE, McFall-Ngai M, Mukherjee A, Rader B, et al. Symbiosis research, technology, and education: Proceedings of the 6th International Symbiosis Society Congress held in Madison Wisconsin, USA, August 2009 Symbiosis. 51: 1-12. DOI: 10.1007/S13199-010-0076-0  0.313
2009 Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI. A core gut microbiome in obese and lean twins. Nature. 457: 480-4. PMID 19043404 DOI: 10.1038/Nature07540  0.41
2008 Wen L, Ley RE, Volchkov PY, Stranges PB, Avanesyan L, Stonebraker AC, Hu C, Wong FS, Szot GL, Bluestone JA, Gordon JI, Chervonsky AV. Innate immunity and intestinal microbiota in the development of Type 1 diabetes. Nature. 455: 1109-13. PMID 18806780 DOI: 10.1038/Nature07336  0.336
2008 Ley RE, Lozupone CA, Hamady M, Knight R, Gordon JI. Worlds within worlds: evolution of the vertebrate gut microbiota. Nature Reviews. Microbiology. 6: 776-88. PMID 18794915 DOI: 10.1038/Nrmicro1978  0.417
2008 Godoy-Vitorino F, Ley RE, Gao Z, Pei Z, Ortiz-Zuazaga H, Pericchi LR, Garcia-Amado MA, Michelangeli F, Blaser MJ, Gordon JI, Domínguez-Bello MG. Bacterial community in the crop of the hoatzin, a neotropical folivorous flying bird. Applied and Environmental Microbiology. 74: 5905-12. PMID 18689523 DOI: 10.1128/Aem.00574-08  0.369
2008 Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, Bircher JS, Schlegel ML, Tucker TA, Schrenzel MD, Knight R, Gordon JI. Evolution of mammals and their gut microbes. Science (New York, N.Y.). 320: 1647-51. PMID 18497261 DOI: 10.1126/Science.1155725  0.421
2008 Zaneveld J, Turnbaugh PJ, Lozupone C, Ley RE, Hamady M, Gordon JI, Knight R. Host-bacterial coevolution and the search for new drug targets. Current Opinion in Chemical Biology. 12: 109-14. PMID 18280814 DOI: 10.1016/J.Cbpa.2008.01.015  0.359
2008 Feazel LM, Spear JR, Berger AB, Harris JK, Frank DN, Ley RE, Pace NR. Eucaryotic diversity in a hypersaline microbial mat. Applied and Environmental Microbiology. 74: 329-32. PMID 17993566 DOI: 10.1128/Aem.01448-07  0.356
2007 Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. The human microbiome project. Nature. 449: 804-10. PMID 17943116 DOI: 10.1038/Nature06244  0.314
2007 Xu J, Mahowald MA, Ley RE, Lozupone CA, Hamady M, Martens EC, Henrissat B, Coutinho PM, Minx P, Latreille P, Cordum H, Van Brunt A, Kim K, Fulton RS, Fulton LA, et al. Evolution of symbiotic bacteria in the distal human intestine. Plos Biology. 5: e156. PMID 17579514 DOI: 10.1371/Journal.Pbio.0050156  0.411
2007 Ley RE, Knight R, Gordon JI. The human microbiome: eliminating the biomedical/environmental dichotomy in microbial ecology. Environmental Microbiology. 9: 3-4. PMID 17227400 DOI: 10.1111/J.1462-2920.2006.01222_3.X  0.349
2006 Rawls JF, Mahowald MA, Ley RE, Gordon JI. Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. Cell. 127: 423-33. PMID 17055441 DOI: 10.1016/J.Cell.2006.08.043  0.382
2006 Ley RE, Harris JK, Wilcox J, Spear JR, Miller SR, Bebout BM, Maresca JA, Bryant DA, Sogin ML, Pace NR. Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat. Applied and Environmental Microbiology. 72: 3685-95. PMID 16672518 DOI: 10.1128/Aem.72.5.3685-3695.2006  0.418
2006 Ley RE, Peterson DA, Gordon JI. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell. 124: 837-48. PMID 16497592 DOI: 10.1016/J.Cell.2006.02.017  0.374
2006 Bäckhed F, Ley RE, Sonnenburg JL, Gordon JI. The human intestinal microbiota and its relationship to energy balance Scandinavian Journal of Food and Nutrition. 50: 121-123. DOI: 10.1080/17482970601066546  0.354
2005 Ley RE, Bäckhed F, Turnbaugh P, Lozupone CA, Knight RD, Gordon JI. Obesity alters gut microbial ecology. Proceedings of the National Academy of Sciences of the United States of America. 102: 11070-5. PMID 16033867 DOI: 10.1073/Pnas.0504978102  0.371
2005 Bäckhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI. Host-bacterial mutualism in the human intestine. Science (New York, N.Y.). 307: 1915-20. PMID 15790844 DOI: 10.1126/Science.1104816  0.395
2004 Cleveland CC, Townsend AR, Constance BC, Ley RE, Schmidt SK. Soil microbial dynamics in Costa Rica: Seasonal and biogeochemical constraints Biotropica. 36: 184-195. DOI: 10.1646/03115-Q1562  0.571
2004 Ley RE, Williams MW, Schmidt SK. Microbial population dynamics in an extreme environment: Controlling factors in talus soils at 3750 m in the Colorado Rocky Mountains Biogeochemistry. 68: 313-335. DOI: 10.1023/B:Biog.0000031032.58611.D0  0.542
2004 Schmidt SK, Lipson DA, Ley RE, Fisk MC, West AE. Impacts of chronic nitrogen additions vary seasonally and by microbial functional group in tundra soils Biogeochemistry. 69: 1-17. DOI: 10.1023/B:Biog.0000031028.53116.9B  0.558
2003 Spear JR, Ley RE, Berger AB, Pace NR. Complexity in natural microbial ecosystems: the Guerrero Negro experience. The Biological Bulletin. 204: 168-73. PMID 12700148 DOI: 10.2307/1543553  0.373
2002 Ley RE, Schmidt SK. Fungal and bacterial responses to phenolic compounds and amino acids in high altitude barren soils Soil Biology and Biochemistry. 34: 989-995. DOI: 10.1016/S0038-0717(02)00032-9  0.546
2001 González G, Ley RE, Schmidt SK, Zou X, Seastedt TR. Soil ecological interactions: comparisons between tropical and subalpine forests. Oecologia. 128: 549-556. PMID 28547400 DOI: 10.1007/S004420100685  0.553
2001 Ley RE, Lipson DA, Schmidt S. Microbial Biomass Levels in Barren and Vegetated High Altitude Talus Soils Soil Science Society of America Journal. 65: 111-117. DOI: 10.2136/Sssaj2001.651111X  0.545
2001 González G, Ley RE, Schmidt SK, Zou X, Seastedt TR. Soil ecological interactions: Comparisons between tropical and subalpine forests Oecologia. 128: 549-556. DOI: 10.1007/s004420100685  0.479
2001 Ley RE, Lipson DA, Schmidt SK. Division S-3 - Soil biology & biochemistry: Microbial biomass levels in barren and vegetated high altitude talus soils Soil Science Society of America Journal. 65: 111-117.  0.491
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