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Micah Dunthorn, Ph.D. - Publications

Affiliations: 
2009 Organismic & Evolutionary Biology University of Massachusetts, Amherst, Amherst, MA 
Area:
Microbiology Biology, Virology Biology
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52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ewers I, Rajter L, Czech L, Mahé F, Stamatakis A, Dunthorn M. Interpreting phylogenetic placements for taxonomic assignment of environmental DNA. The Journal of Eukaryotic Microbiology. e12990. PMID 37448139 DOI: 10.1111/jeu.12990  0.333
2020 Singer D, Seppey CVW, Lentendu G, Dunthorn M, Bass D, Belbahri L, Blandenier Q, Debroas D, de Groot GA, de Vargas C, Domaizon I, Duckert C, Izaguirre I, Koenig I, Mataloni G, et al. Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems. Environment International. 146: 106262. PMID 33221595 DOI: 10.1016/j.envint.2020.106262  0.302
2020 Ritter CD, Dunthorn M, Anslan S, de Lima VX, Tedersoo L, Nilsson RH, Antonelli A. Advancing biodiversity assessments with environmental DNA: Long-read technologies help reveal the drivers of Amazonian fungal diversity. Ecology and Evolution. 10: 7509-7524. PMID 32760545 DOI: 10.1002/Ece3.6477  0.409
2020 Santoferrara L, Burki F, Filker S, Logares R, Dunthorn M, McManus GB. Perspectives from Ten Years of Protist Studies by High-Throughput Metabarcoding. The Journal of Eukaryotic Microbiology. PMID 32498124 DOI: 10.1111/Jeu.12813  0.341
2019 Kraus D, Chi J, Boenigk J, Beisser D, Graupner N, Dunthorn M. Putatively asexual chrysophytes have meiotic genes: evidence from transcriptomic data. Peerj. 6: e5894. PMID 30671284 DOI: 10.7717/Peerj.5894  0.347
2018 Piredda R, Claverie JM, Decelle J, de Vargas C, Dunthorn M, Edvardsen B, Eikrem W, Forster D, Kooistra WHCF, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, et al. Diatom diversity through HTS-metabarcoding in coastal European seas. Scientific Reports. 8: 18059. PMID 30584235 DOI: 10.1038/S41598-018-36345-9  0.393
2018 Lentendu G, Buosi PRB, Cabral AF, Trevizan Segóvia B, Ramos Meira B, Lansac-Tôha FM, Velho LFM, Ritter CD, Dunthorn M. Protist Biodiversity and Biogeography in Lakes From Four Brazilian River-Floodplain Systems. The Journal of Eukaryotic Microbiology. PMID 30474198 DOI: 10.1111/Jeu.12703  0.344
2018 Decelle J, Carradec Q, Pochon X, Henry N, Romac S, Mahé F, Dunthorn M, Kourlaiev A, Voolstra CR, Wincker P, de Vargas C. Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean. Current Biology : Cb. PMID 30416058 DOI: 10.1016/J.Cub.2018.09.024  0.347
2018 Gurdebeke PR, Mertens KN, Takano Y, Yamaguchi A, Bogus K, Dunthorn M, Matsuoka K, Vrielinck H, Louwye S. The affiliation of Hexasterias problematica and Halodinium verrucatum sp. nov. to ciliate cysts based on molecular phylogeny and cyst wall composition. European Journal of Protistology. 66: 115-135. PMID 30261410 DOI: 10.1016/J.Ejop.2018.09.002  0.369
2018 Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M, et al. Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. The Journal of Eukaryotic Microbiology. PMID 30257078 DOI: 10.1111/Jeu.12691  0.435
2018 Lentendu G, Mahé F, Bass D, Rueckert S, Stoeck T, Dunthorn M. Consistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists. Molecular Ecology. PMID 29851187 DOI: 10.1111/Mec.14731  0.339
2018 Bass D, Czech L, Williams B, Berney C, Dunthorn M, Mahé F, Torruella G, Stentiford GD, Williams TA. Clarifying the Relationships between Microsporidia and Cryptomycota. The Journal of Eukaryotic Microbiology. PMID 29603494 DOI: 10.1111/Jeu.12519  0.455
2018 Geisen S, Mitchell EAD, Adl S, Bonkowski M, Dunthorn M, Ekelund F, Fernández LD, Jousset A, Krashevska V, Singer D, Spiegel FW, Walochnik J, Lara E. Soil protists: a fertile frontier in soil biology research. Fems Microbiology Reviews. PMID 29447350 DOI: 10.1093/Femsre/Fuy006  0.336
2017 Dunthorn M, Zufall RA, Chi J, Paszkiewicz K, Moore K, Mahé F. Meiotic Genes in Colpodean Ciliates Support Secretive Sexuality. Genome Biology and Evolution. 9: 1781-1787. PMID 28854634 DOI: 10.1093/Gbe/Evx125  0.315
2017 Mahé F, de Vargas C, Bass D, Czech L, Stamatakis A, Lara E, Singer D, Mayor J, Bunge J, Sernaker S, Siemensmeyer T, Trautmann I, Romac S, Berney C, Kozlov A, ... ... Dunthorn M, et al. Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests. Nature Ecology & Evolution. 1: 91. PMID 28812652 DOI: 10.1038/S41559-017-0091  0.374
2017 Dunthorn M, Kauserud H, Bass D, Mayor J, Mahé F. Yeasts dominate soil fungal communities in three lowland Neotropical rainforests. Environmental Microbiology Reports. PMID 28799713 DOI: 10.1111/1758-2229.12575  0.394
2017 Warren A, Patterson DJ, Dunthorn M, Clamp JC, Achilles-Day UE, Aescht E, Al-Farraj SA, Al-Quraishy S, Al-Rasheid K, Carr M, Day JG, Dellinger M, El-Serehy HA, Fan Y, Gao F, et al. Beyond the "Code": A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora). The Journal of Eukaryotic Microbiology. PMID 28061024 DOI: 10.1111/Jeu.12391  0.31
2017 Geisen S, Mitchell EA, Wilkinson DM, Adl S, Bonkowski M, Brown MW, Fiore-Donno AM, Heger TJ, Jassey VE, Krashevska V, Lahr DJ, Marcisz K, Mulot M, Payne R, Singer D, ... ... Dunthorn M, et al. Soil protistology rebooted: 30 fundamental questions to start with Soil Biology and Biochemistry. 111: 94-103. DOI: 10.1016/J.Soilbio.2017.04.001  0.646
2016 Forster D, Dunthorn M, Mahé F, Dolan JR, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Edvardsen B, Egge E, Eikrem W, Gobet A, et al. Benthic protists: the under-charted majority. Fems Microbiology Ecology. PMID 27267932 DOI: 10.1093/Femsec/Fiw120  0.371
2016 Forster D, Dunthorn M, Stoeck T, Mahé F. Comparison of three clustering approaches for detecting novel environmental microbial diversity. Peerj. 4: e1692. PMID 26966652 DOI: 10.7717/Peerj.1692  0.381
2015 Richards TA, Leonard G, Mahé F, Del Campo J, Romac S, Jones MD, Maguire F, Dunthorn M, De Vargas C, Massana R, Chambouvet A. Molecular diversity and distribution of marine fungi across 130 European environmental samples. Proceedings. Biological Sciences / the Royal Society. 282. PMID 26582030 DOI: 10.1098/Rspb.2015.2243  0.422
2015 Massana R, Gobet A, Audic S, Bass D, Bittner L, Boutte C, Chambouvet A, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Forn I, Forster D, et al. Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing. Environmental Microbiology. 17: 4035-49. PMID 26119494 DOI: 10.1111/1462-2920.12955  0.346
2015 de Vargas C, Audic S, Henry N, Decelle J, Mahé F, Logares R, Lara E, Berney C, Le Bescot N, Probert I, Carmichael M, Poulain J, Romac S, Colin S, Aury JM, ... ... Dunthorn M, et al. Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean. Science (New York, N.Y.). 348: 1261605. PMID 25999516 DOI: 10.1126/Science.1261605  0.391
2015 Forster D, Bittner L, Karkar S, Dunthorn M, Romac S, Audic S, Lopez P, Stoeck T, Bapteste E. Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms. Bmc Biology. 13: 16. PMID 25762112 DOI: 10.1186/S12915-015-0125-5  0.421
2015 Filker S, Gimmler A, Dunthorn M, Mahé F, Stoeck T. Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds. Extremophiles : Life Under Extreme Conditions. 19: 283-95. PMID 25472012 DOI: 10.1007/S00792-014-0713-2  0.402
2015 Mahé F, Mayor J, Bunge J, Chi J, Siemensmeyer T, Stoeck T, Wahl B, Paprotka T, Filker S, Dunthorn M. Comparing High-throughput Platforms for Sequencing the V4 Region of SSU-rDNA in Environmental Microbial Eukaryotic Diversity Surveys. The Journal of Eukaryotic Microbiology. 62: 338-45. PMID 25312509 DOI: 10.1111/Jeu.12187  0.394
2015 Dunthorn M, Lipps JH, Dolan JR, Saab MAA, Aescht E, Bachy C, de Cao MSB, Berger H, Bourland WA, Choi JK, Clamp J, Doherty M, Gao F, Gentekaki E, Gong J, et al. Ciliates - Protists with complex morphologies and ambiguous early fossil record Marine Micropaleontology. 119: 1-6. DOI: 10.1016/J.Marmicro.2015.05.004  0.354
2014 Chi J, Parrow MW, Dunthorn M. Cryptic sex in Symbiodinium (Alveolata, Dinoflagellata) is supported by an inventory of meiotic genes. The Journal of Eukaryotic Microbiology. 61: 322-7. PMID 24904932 DOI: 10.1111/Jeu.12110  0.335
2014 Dunthorn M, Stoeck T, Clamp J, Warren A, Mahé F. Ciliates and the rare biosphere: a review. The Journal of Eukaryotic Microbiology. 61: 404-9. PMID 24801645 DOI: 10.1111/Jeu.12121  0.354
2014 Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Gobet A, Kooistra WH, Mahé F, Not F, et al. Patterns of rare and abundant marine microbial eukaryotes. Current Biology : Cb. 24: 813-21. PMID 24704080 DOI: 10.1016/J.Cub.2014.02.050  0.346
2014 Filker S, Kaiser M, Rosselló-Móra R, Dunthorn M, Lax G, Stoeck T. "Candidatus Haloectosymbiotes riaformosensis" (Halobacteriaceae), an archaeal ectosymbiont of the hypersaline ciliate Platynematum salinarum. Systematic and Applied Microbiology. 37: 244-51. PMID 24629416 DOI: 10.1016/J.Syapm.2014.01.001  0.397
2014 Vďačný P, Breiner HW, Yashchenko V, Dunthorn M, Stoeck T, Foissner W. The chaos prevails: molecular phylogeny of the Haptoria (Ciliophora, Litostomatea). Protist. 165: 93-111. PMID 24524973 DOI: 10.1016/J.Protis.2013.11.001  0.415
2014 Dunthorn M, Otto J, Berger SA, Stamatakis A, Mahé F, Romac S, de Vargas C, Audic S, Stock A, Kauff F, Stoeck T. Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context. Molecular Biology and Evolution. 31: 993-1009. PMID 24473288 DOI: 10.1093/Molbev/Msu055  0.364
2014 Foissner W, Bourland WA, Wolf KW, Stoeck T, Dunthorn M. New SSU-rDNA sequences for eleven colpodeans (Ciliophora, Colpodea) and description of Apocyrtolophosis nov. gen. European Journal of Protistology. 50: 40-6. PMID 24210999 DOI: 10.1016/J.Ejop.2013.09.003  0.414
2014 Stoeck T, Przybos E, Dunthorn M. The D1-D2 region of the large subunit ribosomal DNA as barcode for ciliates Molecular Ecology Resources. 14: 458-468. PMID 24165195 DOI: 10.1111/1755-0998.12195  0.325
2014 Dunthorn M, Hall M, Foissner W, Stoeck T, Katz LA. Broad Taxon Sampling of Ciliates Using Mitochondrial Small Subunit Ribosomal DNA Acta Protozoologica. 53: 207-213. DOI: 10.4467/16890027Ap.14.017.1598  0.53
2013 Guillou L, Bachar D, Audic S, Bass D, Berney C, Bittner L, Boutte C, Burgaud G, de Vargas C, Decelle J, Del Campo J, Dolan JR, Dunthorn M, Edvardsen B, Holzmann M, et al. The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy. Nucleic Acids Research. 41: D597-604. PMID 23193267 DOI: 10.1093/Nar/Gks1160  0.368
2013 Zhan Z, Xu K, Dunthorn M. Evaluating molecular support for and against the monophyly of the Peritrichia and phylogenetic relationships within the Mobilida (Ciliophora, Oligohymenophorea) Zoologica Scripta. 42: 213-226. DOI: 10.1111/J.1463-6409.2012.00568.X  0.368
2012 Adl SM, Simpson AG, Lane CE, Lukeš J, Bass D, Bowser SS, Brown MW, Burki F, Dunthorn M, Hampl V, Heiss A, Hoppenrath M, Lara E, Le Gall L, Lynn DH, et al. The revised classification of eukaryotes. The Journal of Eukaryotic Microbiology. 59: 429-93. PMID 23020233 DOI: 10.1111/J.1550-7408.2012.00644.X  0.368
2012 Huang J, Dunthorn M, Song W. Expanding character sampling for the molecular phylogeny of euplotid ciliates (Protozoa, Ciliophora) using three markers, with a focus on the family Uronychiidae. Molecular Phylogenetics and Evolution. 63: 598-605. PMID 22387189 DOI: 10.1016/J.Ympev.2012.02.007  0.434
2012 Dunthorn M, Katz LA, Stoeck T, Foissner W. Congruence and indifference between two molecular markers for understanding oral evolution in the Marynidae sensu lato (Ciliophora, Colpodea). European Journal of Protistology. 48: 297-304. PMID 22356924 DOI: 10.1016/J.Ejop.2012.01.007  0.572
2012 Dunthorn M, Klier J, Bunge J, Stoeck T. Comparing the hyper-variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity. The Journal of Eukaryotic Microbiology. 59: 185-7. PMID 22236102 DOI: 10.1111/J.1550-7408.2011.00602.X  0.336
2012 Dunthorn M, Stoeck T, Wolf K, Breiner HW, Foissner W. Diversity and endemism of ciliates inhabiting Neotropical phytotelmata Systematics and Biodiversity. 10: 195-205. DOI: 10.1080/14772000.2012.685195  0.445
2011 Nebel M, Pfabel C, Stock A, Dunthorn M, Stoeck T. Delimiting operational taxonomic units for assessing ciliate environmental diversity using small-subunit rRNA gene sequences. Environmental Microbiology Reports. 3: 154-8. PMID 23761246 DOI: 10.1111/J.1758-2229.2010.00200.X  0.426
2011 Katz LA, DeBerardinis J, Hall MS, Kovner AM, Dunthorn M, Muse SV. Heterogeneous rates of molecular evolution among cryptic species of the ciliate morphospecies Chilodonella uncinata. Journal of Molecular Evolution. 73: 266-72. PMID 22258433 DOI: 10.1007/S00239-011-9468-X  0.571
2011 Foissner W, Stoeck T, Agatha S, Dunthorn M. Intraclass evolution and classification of the Colpodea (Ciliophora). The Journal of Eukaryotic Microbiology. 58: 397-415. PMID 21762424 DOI: 10.1111/J.1550-7408.2011.00566.X  0.386
2011 Dunthorn M, Foissner W, Katz LA. Expanding character sampling for ciliate phylogenetic inference using mitochondrial SSU-rDNA as a molecular marker. Protist. 162: 85-99. PMID 20708960 DOI: 10.1016/J.Protis.2010.06.003  0.57
2010 Yi Z, Dunthorn M, Song W, Stoeck T. Increasing taxon sampling using both unidentified environmental sequences and identified cultures improves phylogenetic inference in the Prorodontida (Ciliophora, Prostomatea). Molecular Phylogenetics and Evolution. 57: 937-41. PMID 20705144 DOI: 10.1016/J.Ympev.2010.08.001  0.378
2010 Dunthorn M, Katz LA. Secretive ciliates and putative asexuality in microbial eukaryotes. Trends in Microbiology. 18: 183-8. PMID 20299224 DOI: 10.1016/J.Tim.2010.02.005  0.498
2009 Dunthorn M, Eppinger M, Schwarz MV, Schweikert M, Boenigk J, Katz LA, Stoeck T. Phylogenetic placement of the Cyrtolophosididae Stokes, 1888 (Ciliophora; Colpodea) and neotypification of Aristerostoma marinum Kahl, 1931. International Journal of Systematic and Evolutionary Microbiology. 59: 167-80. PMID 19126743 DOI: 10.1099/Ijs.0.000935-0  0.548
2008 Dunthorn M, Foissner W, Katz LA. Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling. Molecular Phylogenetics and Evolution. 46: 316-27. PMID 17920937 DOI: 10.1016/J.Ympev.2007.08.006  0.574
2006 Parfrey LW, Barbero E, Lasser E, Dunthorn M, Bhattacharya D, Patterson DJ, Katz LA. Evaluating support for the current classification of eukaryotic diversity. Plos Genetics. 2: e220. PMID 17194223 DOI: 10.1371/Journal.Pgen.0020220  0.508
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