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Xuefeng Zhou, Ph.D. - Publications

Affiliations: 
2012 Computer Science Washington University, Saint Louis, St. Louis, MO 
Area:
Computer Science, Bioinformatics Biology
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Zhang W, Zhou X, Zhou X, Xia J. Identification of MicroRNAs and Natural Antisense Transcript-Originated Endogenous siRNAs from Small-RNA Deep Sequencing Data. Methods in Molecular Biology (Clifton, N.J.). 2170: 125-131. PMID 32797455 DOI: 10.1007/978-1-0716-0743-5_9  0.354
2016 Li SJ, Huang J, Zhou XD, Zhang WB, Lai YT, Che GW. Clinicopathological and prognostic significance of Oct-4 expression in patients with non-small cell lung cancer: a systematic review and meta-analysis. Journal of Thoracic Disease. 8: 1587-600. PMID 27499947 DOI: 10.21037/jtd.2016.06.01  0.31
2016 Cui W, Zheng S, Li X, Ma Y, Sang W, Liu M, Zhang W, Zhou X. PIK3CD promoted proliferation in diffuse large B cell lymphoma through upregulation of c-myc. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 27448819 DOI: 10.1007/s13277-016-5225-5  0.33
2016 Liu YF, Wang BY, Zhang WN, Huang JY, Li BS, Zhang M, Jiang L, Li JF, Wang MJ, Dai YJ, Zhang ZG, Wang Q, Kong J, Chen B, Zhu YM, ... ... Zhou X, et al. Genomic Profiling of Adult and Pediatric B-cell Acute Lymphoblastic Leukemia. Ebiomedicine. 8: 173-183. PMID 27428428 DOI: 10.1016/J.Ebiom.2016.04.038  0.317
2016 Liu D, Liu H, Li BZ, Qi H, Jia B, Zhou X, Du HX, Zhang W, Yuan YJ. Multigene Pathway Engineering with Regulatory Linkers (M-PERL). Acs Synthetic Biology. PMID 27389125 DOI: 10.1021/acssynbio.6b00123  0.35
2016 Hu T, Phiwpan K, Guo J, Zhang W, Guo J, Zhang Z, Zou M, Zhang X, Zhang J, Zhou X. MicroRNA-142-3p Negatively Regulates Canonical Wnt Signaling Pathway. Plos One. 11: e0158432. PMID 27348426 DOI: 10.1371/journal.pone.0158432  0.318
2016 Zhou X, Liu Z, Xu S, Zhang W, Wu J. An Automated Comparative Observation System for Sun-Induced Chlorophyll Fluorescence of Vegetation Canopies. Sensors (Basel, Switzerland). 16. PMID 27240371 DOI: 10.3390/s16060775  0.301
2016 Phillips LM, Zhou X, Cogdell DE, Chua CY, Huisinga A, Hess KR, Fuller GN, Zhang W. Glioma progression is mediated by an addiction to aberrant IGFBP2 expression and can be blocked using anti-IGFBP2 strategies. The Journal of Pathology. PMID 27125842 DOI: 10.1002/path.4734  0.321
2016 Yu M, Liang H, Fu Z, Wang X, Liao Z, Zhou Y, Liu Y, Wang Y, Hong Y, Zhou X, Yan X, Yu M, Ma M, Zhang W, Guo B, et al. BAP1 suppresses lung cancer progression and is inhibited by miR-31. Oncotarget. PMID 26885612 DOI: 10.18632/Oncotarget.7328  0.356
2016 Gong C, Zhang W, Zhou X, Wang H, Sun G, Xiao J, Pan Y, Yan S, Wang Y. Novel Virophages Discovered in a Freshwater Lake in China. Frontiers in Microbiology. 7: 5. PMID 26834726 DOI: 10.3389/fmicb.2016.00005  0.328
2015 Fan H, Wu Y, Zhou X, Xia J, Zhang W, Song Y, Liu F, Chen Y, Zhang L, Gao X, Gao H, Li J. Pathway-Based Genome-Wide Association Studies for Two Meat Production Traits in Simmental Cattle. Scientific Reports. 5: 18389. PMID 26672757 DOI: 10.1038/srep18389  0.305
2015 Dai Y, Zhang W, Zhou X, Shi J. Activation of the Protein Kinase B (Akt) Reduces Nur77-induced Apoptosis During Early Brain Injury after Experimental Subarachnoid Hemorrhage in Rat. Annals of Clinical and Laboratory Science. 45: 615-622. PMID 26663789  0.307
2015 Ren Z, Cui T, Zeng J, Chen L, Zhang W, Xu X, Cheng L, Li M, Li J, Zhou X, Li Y. Molecule Targeting Glucosyltransferase Inhibits Streptococcus mutans Biofilm Formation and Virulence. Antimicrobial Agents and Chemotherapy. PMID 26482298 DOI: 10.1128/AAC.00919-15  0.304
2015 Xu ZW, Chen X, Jin XH, Meng XY, Zhou X, Fan FX, Mao SY, Wang Y, Zhang WC, Shan NN, Li YM, Xu RC. SILAC-based proteomic analysis reveals that salidroside antagonizes cobalt chloride-induced hypoxic effects by restoring the tricarboxylic acid cycle in cardiomyocytes. Journal of Proteomics. PMID 26435418 DOI: 10.1016/j.jprot.2015.09.028  0.336
2015 Zhang W, Xu Q, Wu J, Zhou X, Weng J, Xu J, Wang W, Huang Q, Guo X. Role of Src in Vascular Hyperpermeability Induced by Advanced Glycation End Products. Scientific Reports. 5: 14090. PMID 26381822 DOI: 10.1038/srep14090  0.3
2015 Zhao J, Chen C, Xiao JR, Wei HF, Zhou XH, Mao XX, Zhang WD, Qian R, Chen XL, He MQ, Yu XW, Zhao J. An Up-regulation of IRF-1 After a Spinal Cord Injury: Implications for Neuronal Apoptosis. Journal of Molecular Neuroscience : Mn. PMID 26342280 DOI: 10.1007/s12031-015-0642-2  0.308
2015 Sun E, Zhang W, Wang L, Wang A, Ma C, Lei M, Zhou X, Sun Y, Lu B, Liu L, Han R. Down-regulation of Sphk2 suppresses bladder cancer progression. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 26224479 DOI: 10.1007/s13277-015-3818-z  0.322
2015 Yang W, Zhang Y, Zhou X, Zhang W, Xu X, Chen R, Meng Q, Yuan J, Yang P, Yao B. Production of a Highly Protease-Resistant Fungal α-Galactosidase in Transgenic Maize Seeds for Simplified Feed Processing. Plos One. 10: e0129294. PMID 26053048 DOI: 10.1371/journal.pone.0129294  0.316
2015 Phiwpan K, Guo J, Zhang W, Hu T, Boruah BM, Zhang J, Zhou X. A Novel Transgenic Mouse Line for Tracing MicroRNA-155-5p Activity In Vivo. Plos One. 10: e0128198. PMID 26030404 DOI: 10.1371/journal.pone.0128198  0.32
2012 Zhang W, Zhou X, Xia J, Zhou X. Identification of microRNAs and natural antisense transcript-originated endogenous siRNAs from small-RNA deep sequencing data. Methods in Molecular Biology (Clifton, N.J.). 883: 221-7. PMID 22589137 DOI: 10.1007/978-1-61779-839-9_17  0.43
2012 Zhang X, Xia J, Lii YE, Barrera-Figueroa BE, Zhou X, Gao S, Lu L, Niu D, Chen Z, Leung C, Wong T, Zhang H, Guo J, Li Y, Liu R, et al. Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function. Genome Biology. 13: R20. PMID 22439910 DOI: 10.1186/Gb-2012-13-3-R20  0.426
2011 Zhang W, Gao S, Zhou X, Chellappan P, Chen Z, Zhou X, Zhang X, Fromuth N, Coutino G, Coffey M, Jin H. Bacteria-responsive microRNAs regulate plant innate immunity by modulating plant hormone networks. Plant Molecular Biology. 75: 93-105. PMID 21153682 DOI: 10.1007/S11103-010-9710-8  0.452
2011 Zhang W, Gao S, Zhou X, Chellappan P, Chen Z, Zhou X, Zhang X, Fromuth N, Coutino G, Coffey M, Jin H. Erratum to: Bacteria-responsive microRNAs regulate plant innate immunity by modulating plant hormone networks Plant Molecular Biology. 76: 205-206. DOI: 10.1007/S11103-011-9760-6  0.389
2010 Zhang W, Gao S, Zhou X, Xia J, Chellappan P, Zhou X, Zhang X, Jin H. Multiple distinct small RNAs originate from the same microRNA precursors. Genome Biology. 11: R81. PMID 20696037 DOI: 10.1186/Gb-2010-11-8-R81  0.456
2010 Chellappan P, Xia J, Zhou X, Gao S, Zhang X, Coutino G, Vazquez F, Zhang W, Jin H. siRNAs from miRNA sites mediate DNA methylation of target genes. Nucleic Acids Research. 38: 6883-94. PMID 20621980 DOI: 10.1093/Nar/Gkq590  0.453
2009 Zhou X, Sunkar R, Jin H, Zhu JK, Zhang W. Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa. Genome Research. 19: 70-8. PMID 18971307 DOI: 10.1101/Gr.084806.108  0.435
2008 Xu Y, Zhou X, Zhang W. MicroRNA prediction with a novel ranking algorithm based on random walks. Bioinformatics (Oxford, England). 24: i50-8. PMID 18586744 DOI: 10.1093/bioinformatics/btn175  0.347
2008 Zhou X, Wang G, Sutoh K, Zhu JK, Zhang W. Identification of cold-inducible microRNAs in plants by transcriptome analysis. Biochimica Et Biophysica Acta. 1779: 780-8. PMID 18471443 DOI: 10.1016/J.Bbagrm.2008.04.005  0.469
2008 Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK. Identification of novel and candidate miRNAs in rice by high throughput sequencing. Bmc Plant Biology. 8: 25. PMID 18312648 DOI: 10.1186/1471-2229-8-25  0.46
2007 Zhou X, Wang G, Zhang W. UV-B responsive microRNA genes in Arabidopsis thaliana. Molecular Systems Biology. 3: 103. PMID 17437028 DOI: 10.1038/Msb4100143  0.458
2007 Zhou X, Ruan J, Wang G, Zhang W. Characterization and identification of microRNA core promoters in four model species. Plos Computational Biology. 3: e37. PMID 17352530 DOI: 10.1371/Journal.Pcbi.0030037  0.579
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