Tim Y. James, PhD - Publications

Ecology and Evolutionary Biology University of Michigan, Ann Arbor, Ann Arbor, MI 
Fungal evolution

102 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Simmons DR, Bonds AE, Castillo BT, Clemons RA, Glasco AD, Myers JM, Thapa N, Letcher PM, Powell MJ, Longcore JE, James TY. The Collection of Zoosporic Eufungi at the University of Michigan (CZEUM): introducing a new repository of barcoded and cultures. Ima Fungus. 11: 20. PMID 33062585 DOI: 10.1186/s43008-020-00041-z  0.48
2020 James TY, Stajich JE, Hittinger CT, Rokas A. Toward a Fully Resolved Fungal Tree of Life. Annual Review of Microbiology. PMID 32660385 DOI: 10.1146/Annurev-Micro-022020-051835  0.4
2020 Longcore JE, Qin S, Simmons DR, James TY. is a new species of parasitic chytrid of the commercially grown alga, . Mycologia. 1-10. PMID 32271133 DOI: 10.1080/00275514.2020.1730136  0.48
2019 Boyce GR, Gluck-Thaler E, Slot JC, Stajich JE, Davis WJ, James TY, Cooley JR, Panaccione DG, Eilenberg J, De Fine Licht HH, Macias AM, Berger MC, Wickert KL, Stauder CM, Spahr EJ, et al. Psychoactive plant- and mushroom-associated alkaloids from two behavior modifying cicada pathogens. Fungal Ecology. 41: 147-164. PMID 31768192 DOI: 10.1016/J.Funeco.2019.06.002  0.4
2019 Amses KR, Davis WJ, James TY. SCGid, a consensus approach to contig filtering and genome prediction from single cell sequencing libraries of uncultured eukaryotes. Bioinformatics (Oxford, England). PMID 31764940 DOI: 10.1093/Bioinformatics/Btz866  0.36
2019 Davis WJ, Amses KR, James ES, James TY. A new 18S rRNA phylogeny of uncultured predacious fungi (Zoopagales). Mycologia. 1-8. PMID 30856068 DOI: 10.1080/00275514.2018.1546066  0.36
2019 Bewick AJ, Hofmeister BT, Powers RA, Mondo SJ, Grigoriev IV, James TY, Stajich JE, Schmitz RJ. Diversity of cytosine methylation across the fungal tree of life. Nature Ecology & Evolution. PMID 30778188 DOI: 10.1038/S41559-019-0810-9  0.4
2019 Davis WJ, Amses KR, Benny GL, Carter-House D, Chang Y, Grigoriev I, Smith ME, Spatafora JW, Stajich JE, James TY. Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi). Molecular Phylogenetics and Evolution. PMID 30639767 DOI: 10.1016/J.Ympev.2019.01.006  0.72
2018 Hibbett DS, Blackwell M, James TY, Spatafora JW, Taylor JW, Vilgalys R. Phylogenetic taxon definitions for and . Ima Fungus. 9: 291-298. PMID 30622884 DOI: 10.5598/imafungus.2018.09.02.05  1
2018 Ahrendt SR, Quandt CA, Ciobanu D, Clum A, Salamov A, Andreopoulos B, Cheng JF, Woyke T, Pelin A, Henrissat B, Reynolds NK, Benny GL, Smith ME, James TY, Grigoriev IV. Leveraging single-cell genomics to expand the fungal tree of life. Nature Microbiology. PMID 30297742 DOI: 10.1038/S41564-018-0261-0  0.4
2018 Fisher MC, Ghosh P, Shelton JMG, Bates K, Brookes L, Wierzbicki C, Rosa GM, Farrer RA, Aanensen DM, Alvarado-Rybak M, Bataille A, Berger L, Böll S, Bosch J, Clare FC, ... James TY, et al. Development and worldwide use of non-lethal, and minimal population-level impact, protocols for the isolation of amphibian chytrid fungi. Scientific Reports. 8: 7772. PMID 29773857 DOI: 10.1038/S41598-018-24472-2  0.48
2017 Quandt CA, Beaudet D, Corsaro D, Walochnik J, Michel R, Corradi N, James TY. The genome of an intranuclear parasite, Paramicrosporidium saccamoebae, reveals alternative adaptations to obligate intracellular parasitism. Elife. 6. PMID 29171834 DOI: 10.7554/Elife.29594  0.4
2017 Stajich JE. Fungal Genomes and Insights into the Evolution of the Kingdom. Microbiology Spectrum. 5. PMID 28820125 DOI: 10.1128/Microbiolspec.Funk-0055-2016  0.48
2017 Karpov SA, Mamanazarova KS, Popova OV, Aleoshin VV, James TY, Mamkaeva MA, Tcvetkova VS, Vishnyakov AE, Longcore JE. Monoblepharidomycetes diversity includes new parasitic and saprotrophic species with highly intronized rDNA. Fungal Biology. 121: 729-741. PMID 28705399 DOI: 10.1016/J.Funbio.2017.05.002  0.48
2017 Berbee ML, James TY, Strullu-Derrien C. Early Diverging Fungi: Diversity and Impact at the Dawn of Terrestrial Life. Annual Review of Microbiology. PMID 28525299 DOI: 10.1146/Annurev-Micro-030117-020324  0.4
2017 Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, ... ... James TY, et al. Widespread adenine N6-methylation of active genes in fungi. Nature Genetics. PMID 28481340 DOI: 10.1038/Ng.3859  0.72
2017 Farrer RA, Martel A, Verbrugghe E, Abouelleil A, Ducatelle R, Longcore JE, James TY, Pasmans F, Fisher MC, Cuomo CA. Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi. Nature Communications. 8: 14742. PMID 28322291 DOI: 10.1038/Ncomms14742  0.48
2017 Letcher PM, Longcore JE, Quandt CA, Leite DD, James TY, Powell MJ. Morphological, molecular, and ultrastructural characterization of Rozella rhizoclosmatii, a new species in Cryptomycota. Fungal Biology. 121: 1-10. PMID 28007212 DOI: 10.1016/J.Funbio.2016.08.008  0.48
2016 Spatafora JW, Chang Y, Benny GL, Lazarus K, Smith ME, Berbee ML, Bonito G, Corradi N, Grigoriev I, Gryganskyi A, James TY, O'Donnell K, Roberson RW, Taylor TN, Uehling J, et al. A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data. Mycologia. 108: 1028-1046. PMID 27738200 DOI: 10.3852/16-042  1
2016 Jenkinson TS, Betancourt Román CM, Lambertini C, Valencia-Aguilar A, Rodriguez D, Nunes-de-Almeida CH, Ruggeri J, Belasen AM, da Silva Leite D, Zamudio KR, Longcore JE, Toledo LF, James TY. Amphibian-killing chytrid in Brazil comprises both locally endemic and globally expanding populations. Molecular Ecology. PMID 26939017 DOI: 10.1111/Mec.13599  1
2016 Lambertini C, Becker CG, Jenkinson TS, Rodriguez D, da Silva Leite D, James TY, Zamudio KR, Toledo LF. Local phenotypic variation in amphibian-killing fungus predicts infection dynamics Fungal Ecology. 20: 15-21. DOI: 10.1016/J.Funeco.2015.09.014  1
2015 James TY, Marino JA, Perfecto I, Vandermeer J. Identification of putative coffee rust mycoparasites using single molecule DNA sequencing of infected pustules. Applied and Environmental Microbiology. PMID 26567299 DOI: 10.1128/Aem.02639-15  1
2015 James TY, Toledo LF, Rödder D, da Silva Leite D, Belasen AM, Betancourt-Román CM, Jenkinson TS, Soto-Azat C, Lambertini C, Longo AV, Ruggeri J, Collins JP, Burrowes PA, Lips KR, Zamudio KR, et al. Disentangling host, pathogen, and environmental determinants of a recently emerged wildlife disease: lessons from the first 15 years of amphibian chytridiomycosis research. Ecology and Evolution. 5: 4079-97. PMID 26445660 DOI: 10.1002/Ece3.1672  1
2015 Baranova MA, Logacheva MD, Penin AA, Seplyarskiy VB, Safonova YY, Naumenko SA, Klepikova AV, Gerasimov ES, Bazykin GA, James TY, Kondrashov AS. Extraordinary Genetic Diversity in a Wood Decay Mushroom. Molecular Biology and Evolution. 32: 2775-83. PMID 26163667 DOI: 10.1093/Molbev/Msv153  1
2015 Duffy MA, James TY, Longworth A. Ecology, virulence, and phylogeny of Blastulidium paedophthorum, a widespread brood parasite of Daphnia. Applied and Environmental Microbiology. PMID 26048938 DOI: 10.1128/Aem.01369-15  1
2015 de Jesus AL, Marano AV, de Souza JI, James TY, Jerônimo GH, Rocha SCO, Gonçalves DR, Boro MC, Pires-Zottarelli CLA. Achlya catenulata sp. nov., a new Saprolegniales (Oomycetes, Straminipila) from Brazilian mangrove swamp Phytotaxa. 212: 221-228. DOI: 10.11646/phytotaxa.212.3.4  1
2015 Haag KL, James TY, Pombert JF, Larsson R, Schaer TMM, Refardt D, Ebert D. Correction: Evolution of a morphological novelty occurred before genome compaction in a lineage of extreme parasites (Proceedings of the National Academy of Sciences of the United States of America (2014) 111, 43, (15480-15485) DOI: 10.1073/pnas.1410442111) Proceedings of the National Academy of Sciences of the United States of America. 112: E1162. DOI: 10.1073/Pnas.1502848112  1
2015 Grossart HP, Wurzbacher C, James TY, Kagami M. Discovery of dark matter fungi in aquatic ecosystems demands a reappraisal of the phylogeny and ecology of zoosporic fungi Fungal Ecology. DOI: 10.1016/J.Funeco.2015.06.004  1
2015 Lazarus KL, James TY. Surveying the biodiversity of the Cryptomycota using a targeted PCR approach Fungal Ecology. 14: 62-70. DOI: 10.1016/J.Funeco.2014.11.004  1
2015 James TY. Why mushrooms have evolved to be so promiscuous: Insights from evolutionary and ecological patterns Fungal Biology Reviews. 29: 167-178. DOI: 10.1016/J.Fbr.2015.10.002  1
2014 Menkis A, Urbina H, James TY, Rosling A. Archaeorhizomyces borealis sp. nov. and a sequence-based classification of related soil fungal species. Fungal Biology. 118: 943-55. PMID 25457942 DOI: 10.1016/J.Funbio.2014.08.005  1
2014 Haag KL, James TY, Pombert JF, Larsson R, Schaer TM, Refardt D, Ebert D. Evolution of a morphological novelty occurred before genome compaction in a lineage of extreme parasites. Proceedings of the National Academy of Sciences of the United States of America. 111: 15480-5. PMID 25313038 DOI: 10.1073/Pnas.1410442111  1
2014 Seplyarskiy VB, Logacheva MD, Penin AA, Baranova MA, Leushkin EV, Demidenko NV, Klepikova AV, Kondrashov FA, Kondrashov AS, James TY. Crossing-over in a hypervariable species preferentially occurs in regions of high local similarity. Molecular Biology and Evolution. 31: 3016-25. PMID 25135947 DOI: 10.1093/Molbev/Msu242  1
2014 Shaw SD, Berger L, Bell S, Dodd S, James TY, Skerratt LF, Bishop PJ, Speare R. Baseline cutaneous bacteria of free-living New Zealand native frogs (Leiopelma archeyi and Leiopelma hochstetteri) and implications for their role in defense against the amphibian chytrid (Batrachochytrium dendrobatidis). Journal of Wildlife Diseases. 50: 723-32. PMID 25121401 DOI: 10.7589/2013-07-186  1
2014 Molloy DP, Glockling SL, Siegfried CA, Beakes GW, James TY, Mastitsky SE, Wurdak E, Giamberini L, Gaylo MJ, Nemeth MJ. Aquastella gen. nov.: a new genus of saprolegniaceous oomycete rotifer parasites related to Aphanomyces, with unique sporangial outgrowths. Fungal Biology. 118: 544-58. PMID 25088070 DOI: 10.1016/J.Funbio.2014.01.007  1
2014 Beakes GW, Glockling SL, James TY. A new oomycete species parasitic in nematodes, Chlamydomyzium dictyuchoides sp. nov.: developmental biology and phylogenetic studies. Fungal Biology. 118: 527-43. PMID 25088069 DOI: 10.1016/J.Funbio.2014.04.005  1
2014 Toome M, Ohm RA, Riley RW, James TY, Lazarus KL, Henrissat B, Albu S, Boyd A, Chow J, Clum A, Heller G, Lipzen A, Nolan M, Sandor L, Zvenigorodsky N, et al. Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae. The New Phytologist. 202: 554-64. PMID 24372469 DOI: 10.1111/Nph.12653  1
2014 Diez JM, Ibáñez I, Silander JA, Primack R, Higuchi H, Kobori H, Sen A, James TY. Beyond seasonal climate: Statistical estimation of phenological responses to weather Ecological Applications. 24: 1793-1802.  1
2013 James TY, Pelin A, Bonen L, Ahrendt S, Sain D, Corradi N, Stajich JE. Shared signatures of parasitism and phylogenomics unite Cryptomycota and microsporidia. Current Biology : Cb. 23: 1548-53. PMID 23932404 DOI: 10.1016/J.Cub.2013.06.057  1
2013 James TY, Sun S, Li W, Heitman J, Kuo HC, Lee YH, Asiegbu FO, Olson A. Polyporales genomes reveal the genetic architecture underlying tetrapolar and bipolar mating systems. Mycologia. 105: 1374-90. PMID 23928418 DOI: 10.3852/13-162  1
2013 van Diepen LT, Olson A, Ihrmark K, Stenlid J, James TY. Extensive trans-specific polymorphism at the mating type locus of the root decay fungus Heterobasidion. Molecular Biology and Evolution. 30: 2286-301. PMID 23864721 DOI: 10.1093/Molbev/Mst126  1
2013 Diez JM, James TY, McMunn M, Ibáñez I. Predicting species-specific responses of fungi to climatic variation using historical records. Global Change Biology. 19: 3145-54. PMID 23744587 DOI: 10.1111/Gcb.12278  1
2013 Rosenblum EB, James TY, Zamudio KR, Poorten TJ, Ilut D, Rodriguez D, Eastman JM, Richards-Hrdlicka K, Joneson S, Jenkinson TS, Longcore JE, Parra Olea G, Toledo LF, Arellano ML, Medina EM, et al. Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data. Proceedings of the National Academy of Sciences of the United States of America. 110: 9385-90. PMID 23650365 DOI: 10.1073/Pnas.1300130110  1
2013 Malloure BD, James TY. Inbreeding depression in urban environments of the bird's nest fungus Cyathus stercoreus (Nidulariaceae: Basidiomycota). Heredity. 110: 355-62. PMID 23169564 DOI: 10.1038/hdy.2012.95  1
2013 Heitman J, Sun S, James TY. Evolution of fungal sexual reproduction. Mycologia. 105: 1-27. PMID 23099518 DOI: 10.3852/12-253  1
2012 Schloegel LM, Toledo LF, Longcore JE, Greenspan SE, Vieira CA, Lee M, Zhao S, Wangen C, Ferreira CM, Hipolito M, Davies AJ, Cuomo CA, Daszak P, James TY. Novel, panzootic and hybrid genotypes of amphibian chytridiomycosis associated with the bullfrog trade. Molecular Ecology. 21: 5162-77. PMID 22857789 DOI: 10.1111/J.1365-294X.2012.05710.X  1
2012 Olson A, Aerts A, Asiegbu F, Belbahri L, Bouzid O, Broberg A, Canbäck B, Coutinho PM, Cullen D, Dalman K, Deflorio G, van Diepen LT, Dunand C, Duplessis S, Durling M, ... ... James TY, et al. Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. The New Phytologist. 194: 1001-13. PMID 22463738 DOI: 10.1111/J.1469-8137.2012.04128.X  1
2012 Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences of the United States of America. 109: 6241-6. PMID 22454494 DOI: 10.1073/Pnas.1117018109  1
2012 Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Watanabe T, et al. Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis. Proceedings of the National Academy of Sciences of the United States of America. 109: 5458-63. PMID 22434909 DOI: 10.1073/Pnas.1119912109  1
2012 Padamsee M, Kumar TK, Riley R, Binder M, Boyd A, Calvo AM, Furukawa K, Hesse C, Hohmann S, James TY, LaButti K, Lapidus A, Lindquist E, Lucas S, Miller K, et al. The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction. Fungal Genetics and Biology : Fg & B. 49: 217-26. PMID 22326418 DOI: 10.1016/J.Fgb.2012.01.007  1
2012 James TY, Berbee ML. No jacket required--new fungal lineage defies dress code: recently described zoosporic fungi lack a cell wall during trophic phase. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 34: 94-102. PMID 22131166 DOI: 10.1002/Bies.201100110  1
2012 Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Ryu JS, et al. Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis (Proceedings of the National Academy of Sciences (2012) 109 (5458-5463) DOI: 10.1073/pnas. 1119912109) Proceedings of the National Academy of Sciences of the United States of America. 109: 8352. DOI: 10.1073/Pnas.1206295109  1
2011 Garland S, James TY, Blair D, Berger L, Skerratt LF. Polymorphic repetitive loci of the amphibian pathogen Batrachochytrium dendrobatidis. Diseases of Aquatic Organisms. 97: 1-9. PMID 22235589 DOI: 10.3354/Dao02396  1
2011 Rosling A, Cox F, Cruz-Martinez K, Ihrmark K, Grelet GA, Lindahl BD, Menkis A, James TY. Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi. Science (New York, N.Y.). 333: 876-9. PMID 21836015 DOI: 10.1126/Science.1206958  1
2011 van Peer AF, Park SY, Shin PG, Jang KY, Yoo YB, Park YJ, Lee BM, Sung GH, James TY, Kong WS. Comparative genomics of the mating-type loci of the mushroom Flammulina velutipes reveals widespread synteny and recent inversions. Plos One. 6: e22249. PMID 21799803 DOI: 10.1371/Journal.Pone.0022249  1
2011 Porter TM, Martin W, James TY, Longcore JE, Gleason FH, Adler PH, Letcher PM, Vilgalys R. Molecular phylogeny of the Blastocladiomycota (Fungi) based on nuclear ribosomal DNA. Fungal Biology. 115: 381-92. PMID 21530920 DOI: 10.1016/J.Funbio.2011.02.004  1
2011 James TY, Lee M, van Diepen LT. A single mating-type locus composed of homeodomain genes promotes nuclear migration and heterokaryosis in the white-rot fungus Phanerochaete chrysosporium. Eukaryotic Cell. 10: 249-61. PMID 21131435 DOI: 10.1128/Ec.00212-10  1
2011 Longcore JE, Letcher PM, James TY. Homolaphlyctis polyrhiza gen. et sp. nov., a species in the Rhizophydiales (Chytridiomycetes) with multiple rhizoidal axes Mycotaxon. 118: 433-440. DOI: 10.5248/118.433  1
2011 James TY, Hoffman Y, Zarka A, Boussiba S. Paraphysoderma sedebokerense, gen. et sp. Nov., an aplanosporic relative of Physoderma (Blastocladiomycota) Mycotaxon. 118: 177-180. DOI: 10.5248/118.177  1
2011 Yun HY, Kim YH, James TY. First report of false rust caused by synchytrium minutum on kudzu in Korea Plant Disease. 95: 358. DOI: 10.1094/PDIS-09-10-0697  1
2010 Rosenblum EB, Fisher MC, James TY, Stajich JE, Longcore JE, Gentry LR, Poorten TJ. A molecular perspective: biology of the emerging pathogen Batrachochytrium dendrobatidis. Diseases of Aquatic Organisms. 92: 131-47. PMID 21268975 DOI: 10.3354/Dao02179  1
2010 Strandberg R, Nygren K, Menkis A, James TY, Wik L, Stajich JE, Johannesson H. Conflict between reproductive gene trees and species phylogeny among heterothallic and pseudohomothallic members of the filamentous ascomycete genus Neurospora. Fungal Genetics and Biology : Fg & B. 47: 869-78. PMID 20601044 DOI: 10.1016/J.Fgb.2010.06.008  1
2010 Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, Burns C, Canbäck B, Casselton LA, Cheng CK, Deng J, Dietrich FS, Fargo DC, Farman ML, Gathman AC, ... ... James TY, et al. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Proceedings of the National Academy of Sciences of the United States of America. 107: 11889-94. PMID 20547848 DOI: 10.1073/Pnas.1003391107  1
2010 Li M, Liang J, Li Y, Feng B, Yang ZL, James TY, Xu J. Genetic diversity of Dahongjun, the commercially important "Big Red Mushroom" from southern China. Plos One. 5: e10684. PMID 20502696 DOI: 10.1371/Journal.Pone.0010684  1
2010 Skosireva I, James TY, Sun S, Xu J. Mitochondrial inheritance in haploid x non-haploid crosses in Cryptococcus neoformans. Current Genetics. 56: 163-76. PMID 20127336 DOI: 10.1007/S00294-010-0289-Z  1
2010 Schloegel LM, Ferreira CM, James TY, Hipolito M, Longcore JE, Hyatt AD, Yabsley M, Martins AMCRPF, Mazzoni R, Davies AJ, Daszak P. The North American bullfrog as a reservoir for the spread of Batrachochytrium dendrobatidis in Brazil Animal Conservation. 13: 53-61. DOI: 10.1111/J.1469-1795.2009.00307.X  1
2009 Stajich JE, Berbee ML, Blackwell M, Hibbett DS, James TY, Spatafora JW, Taylor JW. The fungi. Current Biology : Cb. 19: R840-5. PMID 19788875 DOI: 10.1016/J.Cub.2009.07.004  1
2009 James TY, Johansson SB, Johannesson H. Trikaryon formation and nuclear selection in pairings between heterokaryons and homokaryons of the root rot pathogen Heterobasidion parviporum. Mycological Research. 113: 583-90. PMID 19640398 DOI: 10.1016/J.Mycres.2009.01.006  1
2009 Parrent JL, James TY, Vasaitis R, Taylor AF. Friend or foe? Evolutionary history of glycoside hydrolase family 32 genes encoding for sucrolytic activity in fungi and its implications for plant-fungal symbioses. Bmc Evolutionary Biology. 9: 148. PMID 19566942 DOI: 10.1186/1471-2148-9-148  1
2009 James TY, Litvintseva AP, Vilgalys R, Morgan JA, Taylor JW, Fisher MC, Berger L, Weldon C, du Preez L, Longcore JE. Rapid global expansion of the fungal disease chytridiomycosis into declining and healthy amphibian populations. Plos Pathogens. 5: e1000458. PMID 19478871 DOI: 10.1371/Journal.Ppat.1000458  1
2009 Simmons DR, James TY, Meyer AF, Longcore JE. Lobulomycetales, a new order in the Chytridiomycota. Mycological Research. 113: 450-60. PMID 19138737 DOI: 10.1016/J.Mycres.2008.11.019  1
2008 Walker SF, Bosch J, James TY, Litvintseva AP, Oliver Valls JA, Piña S, García G, Rosa GA, Cunningham AA, Hole S, Griffiths R, Fisher MC. Invasive pathogens threaten species recovery programs. Current Biology : Cb. 18: R853-4. PMID 18812076 DOI: 10.1016/J.Cub.2008.07.033  1
2008 James TY, Stenlid J, Olson A, Johannesson H. Evolutionary significance of imbalanced nuclear ratios within heterokaryons of the basidiomycete fungus Heterobasidion parviporum. Evolution; International Journal of Organic Evolution. 62: 2279-96. PMID 18637961 DOI: 10.1111/J.1558-5646.2008.00462.X  1
2008 Hoffman Y, Aflalo C, Zarka A, Gutman J, James TY, Boussiba S. Isolation and characterization of a novel chytrid species (phylum Blastocladiomycota), parasitic on the green alga Haematococcus. Mycological Research. 112: 70-81. PMID 18222678 DOI: 10.1016/J.Mycres.2007.09.002  1
2008 Warwick SI, Légère A, Simard MJ, James T. Do escaped transgenes persist in nature? The case of an herbicide resistance transgene in a weedy Brassica rapa population Molecular Ecology. 17: 1387-1395. PMID 17971090 DOI: 10.1111/j.1365-294X.2007.03567.x  1
2008 Warwick SI, James T, Falk KC. AFLP-based molecular characterization of Brassica rapa and diversity in Canadian spring turnip rape cultivars Plant Genetic Resources: Characterisation and Utilisation. 6: 11-21. DOI: 10.1017/S1479262108923819  1
2007 Ceresini PC, Shew HD, James TY, Vilgalys RJ, Cubeta MA. Phylogeography of the Solanaceae-infecting Basidiomycota fungus Rhizoctonia solani AG-3 based on sequence analysis of two nuclear DNA loci. Bmc Evolutionary Biology. 7: 163. PMID 17854492 DOI: 10.1186/1471-2148-7-163  1
2007 Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James T, Kirk PM, Lücking R, Thorsten Lumbsch H, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, et al. A higher-level phylogenetic classification of the Fungi. Mycological Research. 111: 509-47. PMID 17572334 DOI: 10.1016/J.Mycres.2007.03.004  1
2007 Warwick SI, Gugel RK, Gómez-Campo C, James T. Genetic variation in Eruca vesicaria (L.) Cav Plant Genetic Resources: Characterisation and Utilisation. 5: 142-153. DOI: 10.1017/S1479262107842675  1
2006 White MM, James TY, O'Donnell K, Cafaro MJ, Tanabe Y, Sugiyama J. Phylogeny of the Zygomycota based on nuclear ribosomal sequence data. Mycologia. 98: 872-84. PMID 17486964 DOI: 10.3852/Mycologia.98.6.872  1
2006 James TY, Letcher PM, Longcore JE, Mozley-Standridge SE, Porter D, Powell MJ, Griffith GW, Vilgalys R. A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota). Mycologia. 98: 860-71. PMID 17486963 DOI: 10.3852/Mycologia.98.6.860  1
2006 James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature. 443: 818-22. PMID 17051209 DOI: 10.1038/Nature05110  1
2006 Hoegger PJ, Kilaru S, James TY, Thacker JR, Kües U. Phylogenetic comparison and classification of laccase and related multicopper oxidase protein sequences. The Febs Journal. 273: 2308-26. PMID 16650005 DOI: 10.1111/J.1742-4658.2006.05247.X  1
2006 Henkel TW, James TY, Miller SL, Aime MC, Miller OK. The mycorrhizal status of Pseudotulostoma volvata (Elaphomycetaceae, Eurotiales, Ascomycota). Mycorrhiza. 16: 241-4. PMID 16547736 DOI: 10.1007/S00572-006-0040-2  1
2006 James TY, Srivilai P, Kües U, Vilgalys R. Evolution of the bipolar mating system of the mushroom Coprinellus disseminatus from its tetrapolar ancestors involves loss of mating-type-specific pheromone receptor function. Genetics. 172: 1877-91. PMID 16461425 DOI: 10.1534/Genetics.105.051128  1
2006 Harris RN, James TY, Lauer A, Simon MA, Patel A. Amphibian pathogen Batrachochytrium dendrobatidis is inhibited by the cutaneous bacteria of amphibian species Ecohealth. 3: 53-56. DOI: 10.1007/S10393-005-0009-1  1
2005 Adl SM, Simpson AG, Farmer MA, Andersen RA, Anderson OR, Barta JR, Bowser SS, Brugerolle G, Fensome RA, Fredericq S, James TY, Karpov S, Kugrens P, Krug J, Lane CE, et al. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. The Journal of Eukaryotic Microbiology. 52: 399-451. PMID 16248873 DOI: 10.1111/J.1550-7408.2005.00053.X  1
2004 Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, et al. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany. 91: 1446-80. PMID 21652303 DOI: 10.3732/Ajb.91.10.1446  1
2004 James TY, Liou SR, Vilgalys R. The genetic structure and diversity of the A and B mating-type genes from the tropical oyster mushroom, Pleurotus djamor. Fungal Genetics and Biology : Fg & B. 41: 813-25. PMID 15219565 DOI: 10.1016/J.Fgb.2004.04.005  1
2004 James TY, Kües U, Rehner SA, Vilgalys R. Evolution of the gene encoding mitochondrial intermediate peptidase and its cosegregation with the A mating-type locus of mushroom fungi. Fungal Genetics and Biology : Fg & B. 41: 381-90. PMID 14761798 DOI: 10.1016/J.Fgb.2003.11.008  1
2003 Morehouse EA, James TY, Ganley AR, Vilgalys R, Berger L, Murphy PJ, Longcore JE. Multilocus sequence typing suggests the chytrid pathogen of amphibians is a recently emerged clone. Molecular Ecology. 12: 395-403. PMID 12535090 DOI: 10.1046/J.1365-294X.2003.01732.X  1
2002 Moncalvo JM, Vilgalys R, Redhead SA, Johnson JE, James TY, Catherine Aime M, Hofstetter V, Verduin SJ, Larsson E, Baroni TJ, Greg Thorn R, Jacobsson S, Clémençon H, Miller OK. One hundred and seventeen clades of euagarics. Molecular Phylogenetics and Evolution. 23: 357-400. PMID 12099793 DOI: 10.1016/S1055-7903(02)00027-1  1
2002 James TY, Boulianne RP, Bottoli AP, Granado JD, Aebi M, Kües U. The pab1 gene of Coprinus cinereus encodes a bifunctional protein for para-aminobenzoic acid (PABA) synthesis: implications for the evolution of fused PABA synthases. Journal of Basic Microbiology. 42: 91-103. PMID 11981873 DOI: 10.1002/1521-4028(200205)42:2<91::Aid-Jobm91>3.0.Co;2-8  1
2001 Kües U, James TY, Vilgalys R, Challen MP. The chromosomal region containing pab-1, mip, and the A mating type locus of the secondarily homothallic homobasidiomycete Coprinus bilanatus. Current Genetics. 39: 16-24. PMID 11318102 DOI: 10.1007/S002940000176  1
2001 James TY, Vilgalys R. Abundance and diversity of Schizophyllum commune spore clouds in the Caribbean detected by selective sampling. Molecular Ecology. 10: 471-9. PMID 11298961 DOI: 10.1046/J.1365-294X.2001.01224.X  1
2001 James TY, Moncalvo JM, Li S, Vilgalys R. Polymorphism at the ribosomal DNA spacers and its relation to breeding structure of the widespread mushroom Schizophyllum commune. Genetics. 157: 149-61. PMID 11139499  1
2001 Wagner RP, Crow JF. The other fly room: J. T. Patterson and Texas genetics. Genetics. 157: 1-5. PMID 11139486  1
2001 Miller O.K. J, Henkel TW, James TY, Miller SL. Pseudotulostoma, a remarkable new volvate genus in the Elaphomycetaceae from Guyana Mycological Research. 105: 1268-1272. DOI: 10.1017/S095375620100466X  1
2000 James TY, Porter D, Leander CA, Vilgalys R, Longcore JE. Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics Canadian Journal of Botany. 78: 336-350. DOI: 10.1139/B00-009  1
1999 James TY, Porter D, Hamrick JL, Vilgalys R. EVIDENCE FOR LIMITED INTERCONTINENTAL GENE FLOW IN THE COSMOPOLITAN MUSHROOM, SCHIZOPHYLLUM COMMUNE. Evolution; International Journal of Organic Evolution. 53: 1665-1677. PMID 28565469 DOI: 10.1111/J.1558-5646.1999.Tb04552.X  1
1999 James TY, Porter D, Hamrick JL, Vilgalys R. Evidence for limited intercontinental gene flow in the cosmopolitan mushroom, Schizophyllum commune Evolution. 53: 1665-1677.  1
1998 James T, Vege S, Aldrich P, Hamrick JL. Mating systems of three tropical dry forest tree species Biotropica. 30: 587-594. DOI: 10.1111/J.1744-7429.1998.Tb00098.X  1
Show low-probability matches.