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Benjamin Downs Hall - Publications

Affiliations: 
1958-1963 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
 1963-2019 University of Washington, Seattle, Seattle, WA 
Area:
Genome Sciences
Website:
http://www.gs.washington.edu/faculty/hall.htm
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88 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Soza VL, Lindsley D, Waalkes A, Ramage E, Patwardhan RP, Burton JN, Adey A, Kumar A, Qiu R, Shendure J, Hall B. The Rhododendron genome and chromosomal organization provide insight into shared whole genome duplications across the heath family (Ericaceae). Genome Biology and Evolution. PMID 31702783 DOI: 10.1093/Gbe/Evz245  0.314
2011 Craven LA, Danet F, Veldkamp JF, Goetsch LA, Hall BD. Vireya Rhododendrons: their monophyly and classification (Ericaceae, Rhododendron section Schistanthe) Blumea. 56: 153-158. DOI: 10.3767/000651911X590805  0.376
2011 Goetsch LA, Craven LA, Hall BD. Major speciation accompanied the dispersal of Vireya Rhododendrons (Ericaceae, Rhododendron sect. Schistanthe ) through the Malayan archipelago: Evidence from nuclear gene sequences Taxon. 60: 1015-1028. DOI: 10.1002/Tax.604006  0.375
2008 Eckert AJ, Tearse BR, Hall BD. A phylogeographical analysis of the range disjunction for foxtail pine (Pinus balfouriana, Pinaceae): The role of Pleistocene glaciation Molecular Ecology. 17: 1983-1997. PMID 18346123 DOI: 10.1111/J.1365-294X.2008.03722.X  0.325
2008 Craven LA, Goetsch LA, Hall BD, Brown GK. classification of the Vireya group of rhododendron (ericaceae) Blumea. 53: 435-442. DOI: 10.3767/000651908X608070  0.311
2007 Luo J, Yoshikawa N, Hodson MC, Hall BD. Duplication and paralog sorting of RPB2 and RPB1 genes in core eudicots. Molecular Phylogenetics and Evolution. 44: 850-62. PMID 17208015 DOI: 10.1016/J.Ympev.2006.11.020  0.366
2007 Luo J, Hall BD. A multistep process gave rise to RNA polymerase IV of land plants Journal of Molecular Evolution. 64: 101-112. PMID 17160640 DOI: 10.1007/S00239-006-0093-Z  0.406
2006 Liu YJ, Hodson MC, Hall BD. Loss of the flagellum happened only once in the fungal lineage: phylogenetic structure of kingdom Fungi inferred from RNA polymerase II subunit genes. Bmc Evolutionary Biology. 6: 74. PMID 17010206 DOI: 10.1186/1471-2148-6-74  0.387
2006 Eckert AJ, Hall BD. Phylogeny, historical biogeography, and patterns of diversification for Pinus (Pinaceae): Phylogenetic tests of fossil-based hypotheses Molecular Phylogenetics and Evolution. 40: 166-182. PMID 16621612 DOI: 10.1016/J.Ympev.2006.03.009  0.371
2006 Spiegelman S, Hall BD, Storck R. THE OCCURRENCE OF NATURAL DNA-RNA COMPLEXES IN E. COLI INFECTED WITH T2. Proceedings of the National Academy of Sciences of the United States of America. 47: 1135-41. PMID 16590863 DOI: 10.1073/Pnas.47.8.1135  0.347
2005 Goetsch L, Eckert AJ, Hall BD. The Molecular Systematics of Rhododendron (Ericaceae): A Phylogeny Based Upon RPB2 Gene Sequences Systematic Botany. 30: 616-626. DOI: 10.1600/0363644054782170  0.378
2004 Oxelman B, Yoshikawa N, McConaughy BL, Luo J, Denton AL, Hall BD. RPB2 gene phylogeny in flowering plants, with particular emphasis on asterids. Molecular Phylogenetics and Evolution. 32: 462-79. PMID 15223030 DOI: 10.1016/J.Ympev.2004.01.014  0.389
2004 Liu YJ, Hall BD. Body plan evolution of ascomycetes, as inferred from an RNA polymerase II phylogeny Proceedings of the National Academy of Sciences of the United States of America. 101: 4507-4512. PMID 15070748 DOI: 10.1073/Pnas.0400938101  0.326
2003 Kurjan J, Hall BD. Mutations at the Saccharomyces cerevisiae SUP4 tRNA(Tyr) locus: isolation, genetic fine-structure mapping, and correlation with physical structure. Molecular and Cellular Biology. 2: 1501-13. PMID 14582192 DOI: 10.1128/Mcb.2.12.1501  0.303
2002 Matheny PB, Liu YJ, Ammirati JF, Hall BD. Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales). American Journal of Botany. 89: 688-98. PMID 21665669 DOI: 10.3732/Ajb.89.4.688  0.397
2002 Stiller JW, Hall BD. Evolution of the RNA polymerase II C-terminal domain. Proceedings of the National Academy of Sciences of the United States of America. 99: 6091-6. PMID 11972039 DOI: 10.1073/Pnas.082646199  0.434
2001 Stiller JW, Riley J, Hall BD. Are red algae plants? A critical evaluation of three key molecular data sets Journal of Molecular Evolution. 52: 527-539. PMID 11443356 DOI: 10.1007/S002390010183  0.38
2000 Stiller JW, Mcconaughy BL, Hall BD. Evolutionary complementation for polymerase II CTD function Yeast. 16: 57-64. PMID 10620775 DOI: 10.1002/(Sici)1097-0061(20000115)16:1<57::Aid-Yea509>3.0.Co;2-E  0.382
2000 Stiller J, Riley JL, Hall B. THE EVOLUTION OF RNA POLYMERASE II IN RED ALGAE Journal of Phycology. 36: 64-64. DOI: 10.1046/J.1529-8817.1999.00001-191.X  0.398
1999 Stiller JW, Hall BD. Long-branch attraction and the rDNA model of early eukaryotic evolution Molecular Biology and Evolution. 16: 1270-1279. PMID 10939894 DOI: 10.1093/Oxfordjournals.Molbev.A026217  0.388
1999 Liu YJ, Whelen S, Hall BD. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Molecular Biology and Evolution. 16: 1799-808. PMID 10605121 DOI: 10.1093/Oxfordjournals.Molbev.A026092  0.436
1999 Bobkova EV, Habib N, Alexander G, Hall BD. Mutational analysis of the hydrolytic activity of yeast RNA polymerase III. The Journal of Biological Chemistry. 274: 21342-8. PMID 10409694 DOI: 10.1074/Jbc.274.30.21342  0.432
1998 Stiller JW, Duffield EC, Hall BD. Amitochondriate amoebae and the evolution of DNA-dependent RNA polymerase II. Proceedings of the National Academy of Sciences of the United States of America. 95: 11769-74. PMID 9751740 DOI: 10.1073/Pnas.95.20.11769  0.481
1998 Denton AL, McConaughy BL, Hall BD. Usefulness of RNA polymerase II coding sequences for estimation of green plant phylogeny [1] Molecular Biology and Evolution. 15: 1082-1085. PMID 9718735 DOI: 10.1093/Oxfordjournals.Molbev.A026007  0.365
1998 Stiller JW, Hall BD. Sequences of the largest subunit of RNA polymerase II from two red algae and their implications for rhodophyte evolution Journal of Phycology. 34: 857-864. DOI: 10.1046/J.1529-8817.1998.340857.X  0.444
1997 Bobkova EV, Hall BD. Substrate specificity of the RNase activity of yeast RNA polymerase III Journal of Biological Chemistry. 272: 22832-22839. PMID 9278445 DOI: 10.1074/Jbc.272.36.22832  0.444
1997 Stiller JW, Hall BD. The origin of red algae: Implications for plastid evolution Proceedings of the National Academy of Sciences of the United States of America. 94: 4520-4525. PMID 9114022 DOI: 10.1073/Pnas.94.9.4520  0.352
1996 Shaaban SA, Bobkova EV, Chudzik DM, Hall BD. In vitro analysis of elongation and termination by mutant RNA polymerases with altered termination behavior. Molecular and Cellular Biology. 16: 6468-76. PMID 8887675 DOI: 10.1128/Mcb.16.11.6468  0.429
1996 Zecherle GN, Whelen S, Hall BD. Purines are required at the 5' ends of newly initiated RNAs for optimal RNA polymerase III gene expression Molecular and Cellular Biology. 16: 5801-5810. PMID 8816494 DOI: 10.1128/Mcb.16.10.5801  0.469
1995 Shaaban SA, Krupp BM, Hall BD. Termination-altering mutations in the second-largest subunit of yeast RNA polymerase III Molecular and Cellular Biology. 15: 1467-1478. PMID 7862140 DOI: 10.1128/Mcb.15.3.1467  0.448
1994 Furter-Graves EM, Hall BD, Furter R. Role of a small RNA pol II subunit in TATA to transcription start site spacing. Nucleic Acids Research. 22: 4932-6. PMID 7800482 DOI: 10.1093/Nar/22.23.4932  0.412
1993 Aldrich TL, Di Segni G, McConaughy BL, Keen NJ, Whelen S, Hall BD. Structure of the yeast TAP1 protein: dependence of transcription activation on the DNA context of the target gene. Molecular and Cellular Biology. 13: 3434-44. PMID 8497260 DOI: 10.1128/mcb.13.6.3434-3444.1993  0.458
1993 Di Segni G, McConaughy BL, Shapiro RA, Aldrich TL, Hall BD. TAP1, a yeast gene that activates the expression of a tRNA gene with a defective internal promoter. Molecular and Cellular Biology. 13: 3424-33. PMID 8497259 DOI: 10.1128/mcb.13.6.3424-3433.1993  0.437
1992 James P, Hall BD, Whelen S, Craig EA. Multiple protein tyrosine phosphatase-encoding genes in the yeast Saccharomyces cerevisiae Gene. 122: 101-110. PMID 1452018 DOI: 10.1016/0378-1119(92)90037-P  0.392
1992 Furter R, Snaith M, Gillespie DE, Hall BD. Endonucleolytic cleavage of a long 3'-trailer sequence in a nuclear yeast suppressor tRNA. Biochemistry. 31: 10817-24. PMID 1384700 DOI: 10.1021/Bi00159A024  0.383
1991 Furter R, Hall BD. Substances in nuclear wheat germ extracts which interfere with polymerase III transcriptional activity in vitro Plant Molecular Biology. 17: 773-785. PMID 1912498 DOI: 10.1007/Bf00037060  0.323
1991 Furter-Graves EM, Furter R, Hall BD. SHI, a new yeast gene affecting the spacing between TATA and transcription initiation sites. Molecular and Cellular Biology. 11: 4121-7. PMID 1712902 DOI: 10.1128/mcb.11.8.4121-4127.1991  0.394
1990 Furter-Graves EM, Hall BD. DNA sequence elements required for transcription initiation of the Schizosaccharomyces pombe ADH gene in Saccharomyces cerevisiae Mgg Molecular &Amp; General Genetics. 223: 407-416. PMID 2270081 DOI: 10.1007/Bf00264447  0.39
1989 Furter R, Hall BD. Specific transcription and reinitiation of class III genes in wheat embryo nuclei and chromatin Plant Molecular Biology. 12: 567-577. DOI: 10.1007/Bf00036970  0.345
1987 Baker RE, Camier S, Sentenac A, Hall BD. Gene size differentially affects the binding of yeast transcription factor tau to two intragenic regions Proceedings of the National Academy of Sciences of the United States of America. 84: 8768-8772. PMID 2827154 DOI: 10.1073/Pnas.84.24.8768  0.34
1985 Nagasu T, Hall BD. Nucleotide sequence of the GDH gene coding for the NADP-specific glutamate dehydrogenase of Saccharomyces cerevisiae Gene. 37: 247-253. PMID 2932370 DOI: 10.1016/0378-1119(85)90279-3  0.416
1983 Allison DS, Han Goh S, Hall BD. The promoter sequence of a yeast tRNAtyr gene Cell. 34: 655-663. PMID 6352054 DOI: 10.1016/0092-8674(83)90398-7  0.386
1982 Hall BD, Clarkson SG, Tocchini-Valentini G. Transcription initiation of eucaryotic transfer RNA genes. Cell. 29: 3-5. PMID 7049399 DOI: 10.1016/0092-8674(82)90083-6  0.434
1982 Valenzuela P, Medina A, Rutter WJ, Ammerer G, Hall BD. Synthesis and assembly of hepatitis B virus surface antigen particles in yeast Nature. 298: 347-350. PMID 7045698 DOI: 10.1038/298347A0  0.363
1982 Bennetzen JL, Hall BD. Codon selection in yeast Journal of Biological Chemistry. 257: 3026-3031. PMID 7037777  0.537
1982 Koski RA, Allison DS, Worthington M, Hall BD. An in vitro RNA polymerase III system from S. cerevisiae: Effects of deletions and point mutations upon SUP4 gene transcription Nucleic Acids Research. 10: 8127-8143. PMID 6298710 DOI: 10.1093/Nar/10.24.8127  0.443
1982 Bennetzen JL, Hall BD. The primary structure of the Saccharomyces cerevisiae gene for alcohol dehydrogenase Journal of Biological Chemistry. 257: 3018-3025. PMID 6277922  0.529
1982 Sentenac A, Hall B. Yeast Nuclear RNA Polymerases and Their Role in Transcription Cold Spring Harbor Monograph Archive. 561-606. DOI: 10.1101/087969180.11B.561  0.434
1981 Astell CR, Ahlstrom-Jonasson L, Smith M, Tatchell K, Nasmyth KA, Hall BD. The sequence of the DNAs coding for the mating-type loci of Saccharomyces cerevisiae. Cell. 27: 15-23. PMID 7034964 DOI: 10.1016/0092-8674(81)90356-1  0.311
1981 Page GS, Hall BD. Characterization of the yeast tRNA2Ser gene family: Genomic organization and DNA sequence Nucleic Acids Research. 9: 921-934. PMID 7015287 DOI: 10.1093/Nar/9.4.921  0.386
1981 Koski RA, Clarkson SG, Kurjan J, Hall BD, Smith M. Mutations of the yeast SUP4 tRNATyr locus: transcription of the mutant genes in vitro. Cell. 22: 415-25. PMID 7004643 DOI: 10.1016/0092-8674(80)90352-9  0.442
1981 Shalit P, Loughney K, Olson MV, Hall BD. Physical analysis of the CYC1-sup4 interval in Saccharomyces cerevisiae. Molecular and Cellular Biology. 1: 228-36. PMID 6765599 DOI: 10.1128/mcb.1.3.228-236.1981  0.37
1981 Tatchell K, Nasmyth KA, Hall BD, Astell C, Smith M. In vitro mutation analysis of the mating-type locus in yeast. Cell. 27: 25-35. PMID 6276023 DOI: 10.1016/0092-8674(81)90357-3  0.318
1981 Faye G, Leung DW, Tatchell K, Hall BD, Smith M. Deletion mapping of sequences essential for in vivo transcription of the iso-1-cytochrome c gene. Proceedings of the National Academy of Sciences of the United States of America. 78: 2258-62. PMID 6264471 DOI: 10.1073/Pnas.78.4.2258  0.464
1981 Olson MV, Page GS, Sentenac A, Piper PW, Worthington M, Weiss RB, Hall BD. Only one of two closely related yeast suppressor tRNA genes contains an intervening sequence. Nature. 291: 464-9. PMID 6262655 DOI: 10.1038/291464A0  0.401
1981 Nasmyth KA, Tatchell K, Hall BD, Astell C, Smith M. A position effect in the control of transcription at yeast mating type loci. Nature. 289: 244-50. PMID 6256656 DOI: 10.1038/289244A0  0.327
1981 Henikoff S, Tatchell K, Hall BD, Nasmyth KA. Isolation of a gene from Drosophila by complementation in yeast. Nature. 289: 33-7. PMID 6256646 DOI: 10.1038/289033A0  0.441
1981 Hitzeman RA, Hagie FE, Levine HL, Goeddel DV, Ammerer G, Hall BD. Expression of a human gene for interferon in yeast. Nature. 293: 717-22. PMID 6169997 DOI: 10.1038/293717A0  0.368
1980 Kurjan J, Hall BD, Gillam S, Smith M. Mutations at the yeast SUP4 tRNA(Tyr) locus: DNA sequence changes in mutants lacking suppressor activity Cell. 20: 701-709. PMID 6998562 DOI: 10.1016/0092-8674(80)90316-5  0.377
1980 Williamson VM, Bennetzen J, Young ET, Nasmyth K, Hall BD. Isolation of the structural gene for alcohol dehydrogenase by genetic complementation in yeast. Nature. 283: 214-6. PMID 6985717 DOI: 10.1038/283214A0  0.555
1980 Montgomery DL, Leung DW, Smith M, Shalit P, Faye G, Hall BD. Isolation and sequence of the gene for iso-2-cytochrome c in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. 77: 541-5. PMID 6244566 DOI: 10.1073/Pnas.77.1.541  0.349
1980 Olson MV, Page GS, Sentenac A, Loughney K, Kurjan J, Benditt J, Hall BD. Yeast Suppressor tRNA Genes Cold Spring Harbor Monograph Archive. 267-279. DOI: 10.1101/087969129.9B.267  0.448
1979 Olson MV, Loughney K, Hall BD. Identification of the yeast DNA sequences that correspond to specific tyrosine-inserting nonsense suppressor loci. Journal of Molecular Biology. 132: 387-410. PMID 533897 DOI: 10.1016/0022-2836(79)90267-5  0.419
1979 Olson MV, Hall BD, Cameron JR, Davis RW. Cloning of the yeast tyrosine transfer RNA genes in bacteriophage lambda. Journal of Molecular Biology. 127: 285-95. PMID 372541 DOI: 10.1016/0022-2836(79)90330-9  0.45
1979 Zitomer RS, Montgomery DL, Nichols DL, Hall BD. Transcriptional regulation of the yeast cytochrome c gene. Proceedings of the National Academy of Sciences of the United States of America. 76: 3627-31. PMID 226972 DOI: 10.1073/Pnas.76.8.3627  0.403
1979 Smith M, Leung DW, Gillam S, Astell CR, Montgomery DL, Hall BD. Sequence of the gene for iso-1-cytochrome c in Saccharomyces cerevisiae. Cell. 16: 753-61. PMID 222467 DOI: 10.1016/0092-8674(79)90091-6  0.4
1978 Newlon MC, Hall BD. Inhibition of yeast sporulation by ethidium bromide Mgg Molecular &Amp; General Genetics. 165: 113-114. PMID 362161 DOI: 10.1007/Bf00270383  0.374
1978 Montgomery DL, Hall BD, Gillam S, Smith M. Identification and isolation of the yeast cytochrome c gene Cell. 14: 673-680. PMID 210956 DOI: 10.1016/0092-8674(78)90250-7  0.37
1977 Goodman HM, Olson MV, Hall BD. Nucleotide sequence of a mutant eukaryotic gene: the yeast tyrosine-inserting ochre suppressor SUP4-o. Proceedings of the National Academy of Sciences of the United States of America. 74: 5453-7. PMID 341157 DOI: 10.1073/Pnas.74.12.5453  0.42
1977 Olson MV, Montgomery DL, Hopper AK, Page GS, Horodyski F, Hall BD. Molecular characterisation of the tyrosine tRNA genes of yeast. Nature. 267: 639-41. PMID 327334 DOI: 10.1038/267639A0  0.651
1976 Schultz LD, Hall BD. Transcription in yeast: α amanitin sensitivity and other properties which distinguish between RNA polymerases I and III Proceedings of the National Academy of Sciences of the United States of America. 73: 1029-1033. PMID 772676 DOI: 10.1073/Pnas.73.4.1029  0.407
1976 Andrew C, Hopper AK, Hall BD. A yeast mutant defective in the processing of 27S r-RNA precursor Mgg Molecular &Amp; General Genetics. 144: 29-37. PMID 772413 DOI: 10.1007/Bf00277300  0.622
1974 Hopper AK, Magee PT, Welch SK, Friedman M, Hall BD. Macromolecule synthesis and breakdown in relation to sporulation and meiosis in yeast. Journal of Bacteriology. 119: 619-28. PMID 4604714 DOI: 10.1128/Jb.119.2.619-628.1974  0.577
1973 Di Mauro E, Hollenberg CP, Hall BD. Transcription in yeast: a factor that stimulates yeast RNA polymerases. Proceedings of the National Academy of Sciences of the United States of America. 69: 2818-22. PMID 4562741 DOI: 10.1073/Pnas.69.10.2818  0.415
1972 Adman R, Schultz LD, Hall BD. Transcription in yeast: separation and properties of multiple FNA polymerases Proceedings of the National Academy of Sciences of the United States of America. 69: 1702-1706. PMID 4558656 DOI: 10.1073/Pnas.69.7.1702  0.315
1970 Hager G, Hall BD, Fields KL. Transcription Factors from T4-Infected Escherichia coli Cold Spring Harbor Symposia On Quantitative Biology. 35: 233-239. DOI: 10.1101/Sqb.1970.035.01.032  0.356
1969 Crouch RJ, Hall BD, Hager G. Control of gene transcription in T-even bacteriophages: Alterations in RNA polymerase accompanying phage infection Nature. 223: 476-479. PMID 5796950 DOI: 10.1038/223476A0  0.377
1968 Chilton MD, Hall BD. Transforming activity in single-stranded DNA from Bacillus subtilis Journal of Molecular Biology. 34: 439-451. PMID 4999724 DOI: 10.1016/0022-2836(68)90171-X  0.375
1968 Stubbs JD, Hall BD. Effects of amino acid starvation upon constitutive tryptophan messenger RNA synthesis Journal of Molecular Biology. 37: 303-312. PMID 4939046 DOI: 10.1016/0022-2836(68)90269-6  0.372
1968 Stubbs JD, Hall BD. Level of tryptophan messenger RNA in Escherichia coli Journal of Molecular Biology. 37: 289-302. PMID 4939045 DOI: 10.1016/0022-2836(68)90268-4  0.41
1964 HALL BD, NYGAARD AP, GREEN MH. CONTROL OF T2-SPECIFIC RNA SYNTHESIS. Journal of Molecular Biology. 9: 143-53. PMID 14200378 DOI: 10.1016/s0022-2836(64)80096-6  0.551
1964 NYGAARD AP, HALL BD. FORMATION AND PROPERTIES OF RNA-DNA COMPLEXES Journal of Molecular Biology. 9: 125-142. PMID 14200377 DOI: 10.1016/S0022-2836(64)80095-4  0.368
1962 BAUTZ EK, HALL BD. The isolation of T4-specific RNA on a DNA-cellulose column Proceedings of the National Academy of Sciences of the United States of America. 48: 400-408. PMID 13865976 DOI: 10.1073/Pnas.48.3.400  0.38
1961 HALL BD, SPIEGELMAN S. Sequence complementarity of T2-DNA and T2-specific RNA Proceedings of the National Academy of Sciences of the United States of America. 47: 137-163. PMID 13710749 DOI: 10.1073/Pnas.47.2.137  0.367
1961 Green MH, Hall BD. A Comparison of the Native and Derived 30S and 50S Ribosomes of Escherichia coli Biophysical Journal. 1: 517-523. PMID 13708199 DOI: 10.1016/S0006-3495(61)86905-1  0.534
1960 Nomura M, Hall BD, Spiegelman S. Characterization of RNA synthesized in Escherichia coli after bacteriophage T2 infection Journal of Molecular Biology. 2: 306-IN4. DOI: 10.1016/S0022-2836(60)80027-7  0.393
1959 DOTY P, BOEDTKER H, FRESCO JR, HALL BD, HASELKORN R. Configurational studies of polynucleotides and ribonucleic acid. Annals of the New York Academy of Sciences. 81: 693-708. PMID 13817780 DOI: 10.1111/J.1749-6632.1959.Tb49351.X  0.568
1959 Hall BD, Doty P. The preparation and physical chemical properties of ribonucleic acid from microsomal particles Journal of Molecular Biology. 1: 111-126. DOI: 10.1016/S0022-2836(59)80040-1  0.531
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