John Abramyan - Related publications

2010-2011 Microbiology and Plant Pathology University of California, Riverside, Riverside, CA, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Adolfi MC, Du K, Kneitz S, Cabau C, Zahm M, Klopp C, Feron R, Paixão RV, Varela ES, de Almeida FL, de Oliveira MA, Nóbrega RH, Lopez-Roques C, Iampietro C, Lluch J, et al. A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas). Scientific Reports. 11: 21544. PMID 34732792 DOI: 10.1038/s41598-021-01066-z   
2021 Adolfi MC, Du K, Kneitz S, Cabau C, Zahm M, Klopp C, Feron R, Paixão RV, Varela ES, de Almeida FL, de Oliveira MA, Nóbrega RH, Lopez-Roques C, Iampietro C, Lluch J, et al. A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas). Scientific Reports. 11: 21544. PMID 34732792 DOI: 10.1038/s41598-021-01066-z   
2021 Evans BJ, Peter BM, Melnick DJ, Andayani N, Supriatna J, Zhu J, Tosi AJ. Mitonuclear interactions and introgression genomics of macaque monkeys () highlight the influence of behaviour on genome evolution. Proceedings. Biological Sciences. 288: 20211756. PMID 34610767 DOI: 10.1098/rspb.2021.1756   
2021 García-Galán A, Baranowski E, Hygonenq MC, Walch M, Croville G, Citti C, De la Fe C, Nouvel LX. Genome mosaicism in field strains of as footprints of in-host horizontal chromosomal transfer. Applied and Environmental Microbiology. AEM0166121. PMID 34669423 DOI: 10.1128/AEM.01661-21   
2021 Zhang L, Wang S, Su C, Harris AJ, Zhao L, Su N, Wang JR, Duan L, Chang ZY. Comparative Chloroplast Genomics and Phylogenetic Analysis of (Zygophyllaceae) of China. Frontiers in Plant Science. 12: 723622. PMID 34630471 DOI: 10.3389/fpls.2021.723622   
2021 Zhang S, Qi H, Huang C, Yuan L, Zhang L, Wang R, Tian Y, Sun L. Interaction of Male Specific Lethal complex and genomic imbalance on global gene expression in Drosophila. Scientific Reports. 11: 19679. PMID 34608252 DOI: 10.1038/s41598-021-99268-y   
2021 Tian R, Yang C, Geng Y, Seim I, Yang G. Genomewide analysis of sperm whale E2 ubiquitin conjugating enzyme genes. Journal of Genetics. 100. PMID 34787113   
2021 Acs-Szabo L, Papp LA, Sipiczki M, Miklos I. Genome Comparisons of the Fission Yeasts Reveal Ancient Collinear Loci Maintained by Natural Selection. Journal of Fungi (Basel, Switzerland). 7. PMID 34682285 DOI: 10.3390/jof7100864   
2021 Lu L, Hou Q, Wang L, Zhang T, Zhao W, Yan T, Zhao L, Li J, Wan X. Genome-Wide Identification and Characterization of Polygalacturonase Gene Family in Maize ( L.). International Journal of Molecular Sciences. 22. PMID 34639068 DOI: 10.3390/ijms221910722   
2021 Liu Y, Pei T, Yi S, Du J, Zhang X, Deng X, Yao Q, Deng MR, Zhu H. Phylogenomic Analysis Substantiates the Gene as a Powerful Molecular Marker to Efficiently Differentiate the Most Closely Related Genera , , and . Frontiers in Microbiology. 12: 763359. PMID 34707598 DOI: 10.3389/fmicb.2021.763359   
2021 Zhou J, Wu P, Xiong Z, Liu N, Zhao N, Ji M, Qiu Y, Yang B. Chromosome-Level Genome Assembly Reveals Significant Gene Expansion in the Toll and IMD Signaling Pathways of . Frontiers in Genetics. 12: 728418. PMID 34777464 DOI: 10.3389/fgene.2021.728418   
2021 Qiao Q, Edger PP, Xue L, Qiong, Lu J, Zhang Y, Cao Q, Yocca AE, Platts AE, Knapp SJ, Van Montagu M, Van de Peer Y, Lei J, Zhang T. Evolutionary history and pan-genome dynamics of strawberry ( spp.). Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34697247 DOI: 10.1073/pnas.2105431118   
2021 Wu H, Hu Q, Ai F, Zhang J, Kang M, Lin H, Xu Z, Dong G, Ma T, Liu J. A chromosome-level genome assembly for the wild kiwifruit Actinidia kolomikta provides insights into canker resistance and fruit development. Plant Biotechnology Journal. PMID 34786806 DOI: 10.1111/pbi.13748   
2021 Sun J, Wang Y, Garran TA, Qiao P, Wang M, Yuan Q, Guo L, Huang L. Heterogeneous Genetic Diversity Estimation of a Promising Domestication Medicinal Motherwort Based on Chloroplast Genome Resources. Frontiers in Genetics. 12: 721022. PMID 34603384 DOI: 10.3389/fgene.2021.721022   
2021 Sinding MS, Ciucani MM, Ramos-Madrigal J, Carmagnini A, Rasmussen JA, Feng S, Chen G, Vieira FG, Mattiangeli V, Ganjoo RK, Larson G, Sicheritz-Pontén T, Petersen B, Frantz L, Gilbert MTP, et al. Kouprey () genomes unveil polytomic origin of wild Asian . Iscience. 24: 103226. PMID 34712923 DOI: 10.1016/j.isci.2021.103226   
2021 Guerreiro MA, Ahrendt S, Pangilinan J, Chen C, Yan M, Lipzen A, Barry K, Grigoriev IV, Begerow D, Nowrousian M. Draft genome sequences of strains CBS6241 and CBS6242 of the basidiomycetous yeast Filobasidium floriforme. G3 (Bethesda, Md.). PMID 34791213 DOI: 10.1093/g3journal/jkab398   
2021 Li X, Li Y, Sylvester SP, Zang M, El-Kassaby YA, Fang Y. Evolutionary patterns of nucleotide substitution rates in plastid genomes of . Ecology and Evolution. 11: 13401-13414. PMID 34646478 DOI: 10.1002/ece3.8063   
2021 Zhang S, Wang R, Huang C, Zhang L, Sun L. Modulation of Global Gene Expression by Aneuploidy and CNV of Dosage Sensitive Regulatory Genes. Genes. 12. PMID 34681000 DOI: 10.3390/genes12101606   
2021 Janko K, Bartoš O, Kočí J, Roslein J, Drdová EJ, Kotusz J, Eisner J, Mokrejš M, Štefková-Kašparová E. Genome fractionation and loss of heterozygosity in hybrids and polyploids: mechanisms, consequences for selection, and link to gene function. Molecular Biology and Evolution. PMID 34410426 DOI: 10.1093/molbev/msab249   
2021 Jiang N, Hu S, Peng B, Li Z, Yuan X, Xiao S, Fu Y. Genome of Species Provides Insights Into the Evolution, Conifers Substrate Utilization, and Terpene Synthesis for . Frontiers in Microbiology. 12: 724451. PMID 34603250 DOI: 10.3389/fmicb.2021.724451   
2021 Sassi FMC, Moreira-Filho O, Deon GA, Sember A, Bertollo LAC, Liehr T, Oliveira VCS, Viana PF, Feldberg E, Vicari MR, Cioffi MB. Adding New Pieces to the Puzzle of Karyotype Evolution in (Siluriformes, Loricariidae): Investigation of Amazonian Species. Biology. 10. PMID 34571799 DOI: 10.3390/biology10090922   
2021 Jin G, Ma PF, Wu X, Gu L, Long M, Zhang C, Li DZ. New Genes Interacted with Recent Whole Genome Duplicates in the Fast Stem Growth of Bamboos. Molecular Biology and Evolution. PMID 34581782 DOI: 10.1093/molbev/msab288   
2021 Birchler JA, Veitia RA. One Hundred Years of Gene Balance: How Stoichiometric Issues Affect Gene Expression, Genome Evolution, and Quantitative Traits. Cytogenetic and Genome Research. 1-22. PMID 34814143 DOI: 10.1159/000519592   
2021 Hu Q, Ma Y, Mandáková T, Shi S, Chen C, Sun P, Zhang L, Feng L, Zheng Y, Feng X, Yang W, Jiang J, Li T, Zhou P, Yu Q, et al. Genome evolution of the psammophyte for desert adaptation and further speciation. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34649989 DOI: 10.1073/pnas.2025711118   
2021 Yocca AE, Edger PP. Current status and future perspectives on the evolution of cis-regulatory elements in plants. Current Opinion in Plant Biology. 65: 102139. PMID 34837823 DOI: 10.1016/j.pbi.2021.102139   
2021 Pema Y, Ma C, Bautista MAC, Chen T. The complete chloroplast genome sequence of the Tibetan herb (Benth. ex Hook.f.) Mathiesen (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 3261-3262. PMID 34693018 DOI: 10.1080/23802359.2021.1993459   
2021 Bakkali M, Martín-Blázquez R, Ruiz-Estévez M, Garrido-Ramos MA. De Novo Sporophyte Transcriptome Assembly and Functional Annotation in the Endangered Fern Species (Willd.) G. Kunkel. Genes. 12. PMID 34208974 DOI: 10.3390/genes12071017   
2021 Ireland HS, Wu C, Deng CH, Hilario E, Saei A, Erasmuson S, Crowhurst RN, David KM, Schaffer RJ, Chagné D. The Gillenia trifoliata genome reveals dynamics correlated with growth and reproduction in Rosaceae. Horticulture Research. 8: 233. PMID 34719690 DOI: 10.1038/s41438-021-00662-4   
2021 Wang Y, Fang G, Chen X, Cao Y, Wu N, Cui Q, Zhu C, Qian L, Huang Y, Zhan S. The genome of the black cutworm Agrotis ipsilon. Insect Biochemistry and Molecular Biology. 103665. PMID 34624466 DOI: 10.1016/j.ibmb.2021.103665   
2021 Iqbal Qureshi AM, Sofi MU, Dar NA, Khan MH, Mahdi SS, Dar ZA, Bangroo S, El-Serehy HA, Hefft DI, Popescu SM. Insilco identification and characterization of superoxide dismutase gene family in . Saudi Journal of Biological Sciences. 28: 5526-5537. PMID 34588862 DOI: 10.1016/j.sjbs.2021.08.009   
2021 Baptista RP, Li Y, Sateriale A, Brooks KL, Tracey A, Sanders MJ, Ansell BRE, Jex AR, Cooper GW, Smith ED, Xiao R, Dumaine JE, Georgeson P, Pope B, Berriman M, et al. Long-read assembly and comparative evidence-based reanalysis of genome sequences reveals expanded transporter repertoire and duplication of entire chromosome ends including subtelomeric regions. Genome Research. PMID 34764149 DOI: 10.1101/gr.275325.121   
2021 Sun TW, Ku C. Unraveling gene content variation across eukaryotic giant viruses based on network analyses and host associations. Virus Evolution. 7: veab081. PMID 34754514 DOI: 10.1093/ve/veab081   
2021 Thaxton C, Good ME, DiStefano MT, Luo X, Andersen EF, Thorland E, Berg J, Martin CL, Rehm HL, Riggs ER, . Utilizing ClinGen Gene-Disease Validity and Dosage Sensitivity Curations to Inform Variant Classification. Human Mutation. PMID 34694049 DOI: 10.1002/humu.24291   
2021 Young Chae G, Hong WJ, Jeong Jang M, Jung KH, Kim S. Recurrent mutations promote widespread structural and functional divergence of MULE-derived genes in plants. Nucleic Acids Research. PMID 34725701 DOI: 10.1093/nar/gkab932   
2021 He L, Long X, Qi J, Wang Z, Huang Z, Wu S, Zhang X, Luo H, Chen X, Lin J, Yang Q, Huang S, Zhou Q, Zheng L. Genome and gene evolution of seahorse species revealed by the chromosome-level genome of Hippocampus abdominalis. Molecular Ecology Resources. PMID 34698429 DOI: 10.1111/1755-0998.13541   
2021 Shekhovtsov SV, Efremov YR, Poluboyarova TV, Peltek SE. Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida). Vavilovskii Zhurnal Genetiki I Selektsii. 25: 647-651. PMID 34782884 DOI: 10.18699/VJ21.073   
2021 Lu W, Pei Z, Zang M, Lee YK, Zhao J, Chen W, Wang H, Zhang H. Comparative Genomic Analysis of Strains Isolated from Different Niches. Genes. 12. PMID 34680899 DOI: 10.3390/genes12101504   
2021 Zhou Y, Zhang H, Ping H, Ding Y, Hu S, Bi G, Li C, Li H, Huang Y, Guo L, Ma X, Xia Z. Characterization of the complete chloroplast genome of (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 3406-3408. PMID 34790877 DOI: 10.1080/23802359.2021.2000899   
2021 Wang G, Bai X, Cao P, Han J, Zhang Z. The complete chloroplast genome of Hemsl. (Aristolochiaceae: L.). Mitochondrial Dna. Part B, Resources. 6: 3257-3258. PMID 34693016 DOI: 10.1080/23802359.2021.1992317   
2021 He K, Wang J, Zhang Y, Qin Y, Wu H, Wei X. Characterization of the complete chloroplast genome of Leyss. Mitochondrial Dna. Part B, Resources. 6: 2984-2985. PMID 34568554 DOI: 10.1080/23802359.2021.1972864   
2021 Baumgart LA, Lee JE, Salamov A, Dilworth DJ, Na H, Mingay M, Blow MJ, Zhang Y, Yoshinaga Y, Daum CG, O'Malley RC. Persistence and plasticity in bacterial gene regulation. Nature Methods. PMID 34824476 DOI: 10.1038/s41592-021-01312-2   
2021 Barber AE, Sae-Ong T, Kang K, Seelbinder B, Li J, Walther G, Panagiotou G, Kurzai O. Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection. Nature Microbiology. 6: 1526-1536. PMID 34819642 DOI: 10.1038/s41564-021-00993-x   
2021 Ulaszewski B, Meger J, Mishra B, Thines M, Burczyk J. Complete Chloroplast Genomes of L. Reveal Sequence Conservation in the Inverted Repeat and the Presence of Allelic Variation in NUPTs. Genes. 12. PMID 34573338 DOI: 10.3390/genes12091357   
2021 Zhou J, Du Q, Jiang M, Liu S, Wang L, Chen H, Wang B, Liu C. Characterization and comparative analysis of the plastome sequence from (Lamiales: Acanthaceae). Mitochondrial Dna. Part B, Resources. 6: 2896-2902. PMID 34604529 DOI: 10.1080/23802359.2021.1922099   
2021 Klotz C, Radam E, Rausch S, Gosten-Heinrich P, Aebischer T. Real-Time PCR for Molecular Detection of Zoonotic and Non-Zoonotic spp. in Wild Rodents. Microorganisms. 9. PMID 34442688 DOI: 10.3390/microorganisms9081610   
2021 Yu X, Zhong S, Yang H, Chen C, Chen W, Yang H, Guan J, Fu P, Tan F, Ren T, Shen J, Zhang M, Luo P. Identification and Characterization of Resistance Genes in . Frontiers in Plant Science. 12: 758559. PMID 34777439 DOI: 10.3389/fpls.2021.758559   
2021 Huang Z, Zhou X, Stanton C, Ross RP, Zhao J, Zhang H, Yang B, Chen W. Comparative Genomics and Specific Functional Characteristics Analysis of . Microorganisms. 9. PMID 34576887 DOI: 10.3390/microorganisms9091992   
2021 Huang K, Tang J, Zou Y, Sun X, Lan J, Wang W, Xu P, Wu X, Ma R, Wang Q, Wang Z, Liu J. Whole Genome Sequence of , the Causal Agent of Black Spot of Kiwifruit. Frontiers in Microbiology. 12: 713462. PMID 34616379 DOI: 10.3389/fmicb.2021.713462   
2021 Lau MML, Lim LWK, Chung HH, Gan HM. The first transcriptome sequencing and data analysis of the Javan mahseer (. Data in Brief. 39: 107481. PMID 34712757 DOI: 10.1016/j.dib.2021.107481   
2021 White ND, Batz ZA, Braun EL, Braun MJ, Carleton KL, Kimball RT, Swaroop A. A novel exome probe set captures phototransduction genes across birds (Aves) enabling efficient analysis of vision evolution. Molecular Ecology Resources. PMID 34652059 DOI: 10.1111/1755-0998.13496