| Year |
Citation |
Score |
| 2024 |
Hallberg ZF, Nicolas AM, Alvarez-Aponte ZI, Mok KC, Sieradzki ET, Pett-Ridge J, Banfield JF, Carlson HK, Firestone MK, Taga ME. Vitamin B variants structure soil microbial communities despite soil's vast reservoir of B. Biorxiv : the Preprint Server For Biology. PMID 38405713 DOI: 10.1101/2024.02.12.580003 |
0.667 |
|
| 2024 |
Kakouridis A, Yuan M, Nuccio EE, Hagen JA, Fossum CA, Moore ML, Estera-Molina KY, Nico PS, Weber PK, Pett-Ridge J, Firestone MK. Arbuscular mycorrhiza convey significant plant carbon to a diverse hyphosphere microbial food web and mineral-associated organic matter. The New Phytologist. PMID 38358052 DOI: 10.1111/nph.19560 |
0.64 |
|
| 2024 |
Marschmann GL, Tang J, Zhalnina K, Karaoz U, Cho H, Le B, Pett-Ridge J, Brodie EL. Predictions of rhizosphere microbiome dynamics with a genome-informed and trait-based energy budget model. Nature Microbiology. 9: 421-433. PMID 38316928 DOI: 10.1038/s41564-023-01582-w |
0.384 |
|
| 2023 |
Pavlopoulos GA, Baltoumas FA, Liu S, Selvitopi O, Camargo AP, Nayfach S, Azad A, Roux S, Call L, Ivanova NN, Chen IM, Paez-Espino D, Karatzas E, Iliopoulos I, Konstantinidis K, ... ... Pett-Ridge J, et al. Unraveling the functional dark matter through global metagenomics. Nature. 622: 594-602. PMID 37821698 DOI: 10.1038/s41586-023-06583-7 |
0.383 |
|
| 2023 |
Santos-Medellín C, Blazewicz SJ, Pett-Ridge J, Firestone MK, Emerson JB. Viral but not bacterial community successional patterns reflect extreme turnover shortly after rewetting dry soils. Nature Ecology & Evolution. 7: 1809-1822. PMID 37770548 DOI: 10.1038/s41559-023-02207-5 |
0.814 |
|
| 2023 |
Sieradzki ET, Nuccio EE, Pett-Ridge J, Firestone MK. Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development. Msystems. 8: e0031523. PMID 37754554 DOI: 10.1128/msystems.00315-23 |
0.616 |
|
| 2023 |
Nicolas AM, Sieradzki ET, Pett-Ridge J, Banfield JF, Taga ME, Firestone MK, Blazewicz SJ. A subset of viruses thrives following microbial resuscitation during rewetting of a seasonally dry California grassland soil. Nature Communications. 14: 5835. PMID 37730729 DOI: 10.1038/s41467-023-40835-4 |
0.808 |
|
| 2023 |
Walkup J, Dang C, Mau RL, Hayer M, Schwartz E, Stone BW, Hofmockel KS, Koch BJ, Purcell AM, Pett-Ridge J, Wang C, Hungate BA, Morrissey EM. The predictive power of phylogeny on growth rates in soil bacterial communities. Isme Communications. 3: 73. PMID 37454187 DOI: 10.1038/s43705-023-00281-1 |
0.413 |
|
| 2023 |
Vyshenska D, Sampara P, Singh K, Tomatsu A, Kauffman WB, Nuccio EE, Blazewicz SJ, Pett-Ridge J, Louie KB, Varghese N, Kellom M, Clum A, Riley R, Roux S, Eloe-Fadrosh EA, et al. A standardized quantitative analysis strategy for stable isotope probing metagenomics. Msystems. e0128022. PMID 37377419 DOI: 10.1128/msystems.01280-22 |
0.697 |
|
| 2023 |
Maillard F, Michaud TJ, See CR, DeLancey LC, Blazewicz SJ, Kimbrel JA, Pett-Ridge J, Kennedy PG. Melanization slows the rapid movement of fungal necromass carbon and nitrogen into both bacterial and fungal decomposer communities and soils. Msystems. e0039023. PMID 37338274 DOI: 10.1128/msystems.00390-23 |
0.788 |
|
| 2023 |
Riley R, Bowers RM, Camargo AP, Campbell A, Egan R, Eloe-Fadrosh EA, Foster B, Hofmeyr S, Huntemann M, Kellom M, Kimbrel JA, Oliker L, Yelick K, Pett-Ridge J, Salamov A, et al. Terabase-Scale Coassembly of a Tropical Soil Microbiome. Microbiology Spectrum. e0020023. PMID 37310219 DOI: 10.1128/spectrum.00200-23 |
0.35 |
|
| 2023 |
Sieradzki ET, Nuccio EE, Pett-Ridge J, Firestone MK. Correction to: Expression of macromolecular organic nitrogen degrading enzymes identifies potential mediators of soil organic N availability to an annual grass. The Isme Journal. PMID 37258655 DOI: 10.1038/s41396-023-01441-w |
0.584 |
|
| 2023 |
Sieradzki ET, Nuccio EE, Pett-Ridge J, Firestone MK. Expression of macromolecular organic nitrogen degrading enzymes identifies potential mediators of soil organic N availability to an annual grass. The Isme Journal. PMID 37059820 DOI: 10.1038/s41396-023-01402-3 |
0.586 |
|
| 2023 |
Stone BW, Blazewicz SJ, Koch BJ, Dijkstra P, Hayer M, Hofmockel KS, Liu XJA, Mau RL, Pett-Ridge J, Schwartz E, Hungate BA. Nutrients strengthen density dependence of per-capita growth and mortality rates in the soil bacterial community. Oecologia. PMID 36847885 DOI: 10.1007/s00442-023-05322-z |
0.777 |
|
| 2023 |
Stone BWG, Dijkstra P, Finley BK, Fitzpatrick R, Foley MM, Hayer M, Hofmockel KS, Koch BJ, Li J, Liu XJA, Martinez A, Mau RL, Marks J, Monsaint-Queeney V, Morrissey EM, ... ... Pett-Ridge J, et al. Life history strategies among soil bacteria-dichotomy for few, continuum for many. The Isme Journal. PMID 36732614 DOI: 10.1038/s41396-022-01354-0 |
0.419 |
|
| 2022 |
McDaniel MD, Bird JA, Pett-Ridge J, Marin-Spiotta E, Schmidt TM, Grandy AS. Diversifying and perennializing plants in agroecosystems alters retention of new C and N from crop residues. Ecological Applications : a Publication of the Ecological Society of America. e2784. PMID 36478617 DOI: 10.1002/eap.2784 |
0.4 |
|
| 2022 |
Nuccio EE, Blazewicz SJ, Lafler M, Campbell AN, Kakouridis A, Kimbrel JA, Wollard J, Vyshenska D, Riley R, Tomatsu A, Hestrin R, Malmstrom RR, Firestone M, Pett-Ridge J. HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi. Microbiome. 10: 199. PMID 36434737 DOI: 10.1186/s40168-022-01391-z |
0.775 |
|
| 2022 |
Santos-Medellín C, Estera-Molina K, Yuan M, Pett-Ridge J, Firestone MK, Emerson JB. Spatial turnover of soil viral populations and genotypes overlain by cohesive responses to moisture in grasslands. Proceedings of the National Academy of Sciences of the United States of America. 119: e2209132119. PMID 36322723 DOI: 10.1073/pnas.2209132119 |
0.656 |
|
| 2022 |
Greenlon A, Sieradzki E, Zablocki O, Koch BJ, Foley MM, Kimbrel JA, Hungate BA, Blazewicz SJ, Nuccio EE, Sun CL, Chew A, Mancilla CJ, Sullivan MB, Firestone M, Pett-Ridge J, et al. Quantitative Stable-Isotope Probing (qSIP) with Metagenomics Links Microbial Physiology and Activity to Soil Moisture in Mediterranean-Climate Grassland Ecosystems. Msystems. e0041722. PMID 36300946 DOI: 10.1128/msystems.00417-22 |
0.818 |
|
| 2022 |
Slessarev EW, Mayer A, Kelly C, Georgiou K, Pett-Ridge J, Nuccio EE. Initial soil organic carbon stocks govern changes in soil carbon: Reality or artifact? Global Change Biology. PMID 36268673 DOI: 10.1111/gcb.16491 |
0.442 |
|
| 2022 |
Hestrin R, Kan M, Lafler M, Wollard J, Kimbrel JA, Ray P, Blazewicz SJ, Stuart R, Craven K, Firestone M, Nuccio EE, Pett-Ridge J. Plant-associated fungi support bacterial resilience following water limitation. The Isme Journal. PMID 36085516 DOI: 10.1038/s41396-022-01308-6 |
0.806 |
|
| 2022 |
Kakouridis A, Hagen JA, Kan MP, Mambelli S, Feldman LJ, Herman DJ, Weber PK, Pett-Ridge J, Firestone MK. Routes to Roots: Direct Evidence of Water Transport by Arbuscular Mycorrhizal Fungi to Host Plants. The New Phytologist. PMID 35633108 DOI: 10.1111/nph.18281 |
0.467 |
|
| 2022 |
Sokol NW, Slessarev E, Marschmann GL, Nicolas A, Blazewicz SJ, Brodie EL, Firestone MK, Foley MM, Hestrin R, Hungate BA, Koch BJ, Stone BW, Sullivan MB, Zablocki O, Pett-Ridge J. Life and death in the soil microbiome: how ecological processes influence biogeochemistry. Nature Reviews. Microbiology. PMID 35228712 DOI: 10.1038/s41579-022-00695-z |
0.812 |
|
| 2022 |
Ter Horst AM, Santos-Medellín C, Sorensen JW, Zinke LA, Wilson RM, Johnston ER, Trubl G, Pett-Ridge J, Blazewicz SJ, Hanson PJ, Chanton JP, Schadt CW, Kostka JE, Emerson JB. Correction to: Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations. Microbiome. 10: 17. PMID 35078529 DOI: 10.1186/s40168-022-01229-8 |
0.644 |
|
| 2022 |
Lee J, Hestrin R, Nuccio EE, Morrison KD, Ramon CE, Samo TJ, Pett-Ridge J, Ly SS, Laurence TA, Weber PK. Label-Free Multiphoton Imaging of Microbes in Root, Mineral, and Soil Matrices with Time-Gated Coherent Raman and Fluorescence Lifetime Imaging. Environmental Science & Technology. PMID 35029104 DOI: 10.1021/acs.est.1c05818 |
0.346 |
|
| 2022 |
See CR, Keller AB, Hobbie SE, Kennedy PG, Weber PK, Pett-Ridge J. Hyphae move matter and microbes to mineral microsites: Integrating the hyphosphere into conceptual models of soil organic matter stabilization. Global Change Biology. PMID 34989058 DOI: 10.1111/gcb.16073 |
0.474 |
|
| 2021 |
Nuccio EE, Nguyen NH, Nunes da Rocha U, Mayali X, Bougoure J, Weber PK, Brodie E, Firestone M, Pett-Ridge J. Community RNA-Seq: multi-kingdom responses to living versus decaying roots in soil. Isme Communications. 1: 72. PMID 36765158 DOI: 10.1038/s43705-021-00059-3 |
0.685 |
|
| 2021 |
Ter Horst AM, Santos-Medellín C, Sorensen JW, Zinke LA, Wilson RM, Johnston ER, Trubl G, Pett-Ridge J, Blazewicz SJ, Hanson PJ, Chanton JP, Schadt CW, Kostka JE, Emerson JB. Correction to: Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations. Microbiome. 9: 242. PMID 34911559 DOI: 10.1186/s40168-021-01210-x |
0.644 |
|
| 2021 |
Ter Horst AM, Santos-Medellín C, Sorensen JW, Zinke LA, Wilson RM, Johnston ER, Trubl G, Pett-Ridge J, Blazewicz SJ, Hanson PJ, Chanton JP, Schadt CW, Kostka JE, Emerson JB. Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations. Microbiome. 9: 233. PMID 34836550 DOI: 10.1186/s40168-021-01156-0 |
0.722 |
|
| 2021 |
Trubl G, Kimbrel JA, Liquet-Gonzalez J, Nuccio EE, Weber PK, Pett-Ridge J, Jansson JK, Waldrop MP, Blazewicz SJ. Active virus-host interactions at sub-freezing temperatures in Arctic peat soil. Microbiome. 9: 208. PMID 34663463 DOI: 10.1186/s40168-021-01154-2 |
0.797 |
|
| 2021 |
Purcell AM, Hayer M, Koch BJ, Mau RL, Blazewicz SJ, Dijkstra P, Mack MC, Marks JC, Morrissey EM, Pett-Ridge J, Rubin RL, Schwartz E, van Gestel NC, Hungate BA. Decreased growth of wild soil microbes after fifteen years of transplant-induced warming in a montane meadow. Global Change Biology. PMID 34587352 DOI: 10.1111/gcb.15911 |
0.778 |
|
| 2021 |
Neurath RA, Pett-Ridge J, Chu-Jacoby I, Herman D, Whitman T, Nico PS, Lipton AS, Kyle J, Tfaily MM, Thompson A, Firestone MK. Root Carbon Interaction with Soil Minerals Is Dynamic, Leaving a Legacy of Microbially Derived Residues. Environmental Science & Technology. PMID 34558892 DOI: 10.1021/acs.est.1c00300 |
0.65 |
|
| 2021 |
Starr EP, Shi S, Blazewicz SJ, Koch BJ, Probst AJ, Hungate BA, Pett-Ridge J, Firestone MK, Banfield JF. Stable-Isotope-Informed, Genome-Resolved Metagenomics Uncovers Potential Cross-Kingdom Interactions in Rhizosphere Soil. Msphere. e0008521. PMID 34468166 DOI: 10.1128/mSphere.00085-21 |
0.798 |
|
| 2021 |
Waring BG, Sulman BN, Reed S, Smith AP, Averill C, Creamer CA, Cusack DF, Hall SJ, Jastrow JD, Jilling A, Kemner KM, Kleber M, Liu XA, Pett-Ridge J, Schulz M. Response to 'Connectivity and pore accessibility in models of soil carbon cycling'. Global Change Biology. PMID 34407279 DOI: 10.1111/gcb.15850 |
0.424 |
|
| 2021 |
Bates CT, Escalas A, Kuang J, Hale L, Wang Y, Herman D, Nuccio EE, Wan X, Bhattacharyya A, Fu Y, Tian R, Wang G, Ning D, Yang Y, Wu L, ... Pett-Ridge J, et al. Conversion of marginal land into switchgrass conditionally accrues soil carbon but reduces methane consumption. The Isme Journal. PMID 34211103 DOI: 10.1038/s41396-021-00916-y |
0.655 |
|
| 2021 |
Stone BW, Li J, Koch BJ, Blazewicz SJ, Dijkstra P, Hayer M, Hofmockel KS, Liu XA, Mau RL, Morrissey EM, Pett-Ridge J, Schwartz E, Hungate BA. Author Correction: Nutrients cause consolidation of soil carbon flux to small proportion of bacterial community. Nature Communications. 12: 4052. PMID 34168161 DOI: 10.1038/s41467-021-24314-2 |
0.776 |
|
| 2021 |
Stone BW, Li J, Koch BJ, Blazewicz SJ, Dijkstra P, Hayer M, Hofmockel KS, Liu XA, Mau RL, Morrissey EM, Pett-Ridge J, Schwartz E, Hungate BA. Nutrients cause consolidation of soil carbon flux to small proportion of bacterial community. Nature Communications. 12: 3381. PMID 34099669 DOI: 10.1038/s41467-021-23676-x |
0.76 |
|
| 2021 |
Hestrin R, Weber PK, Pett-Ridge J, Lehmann J. Plants and mycorrhizal symbionts acquire substantial soil nitrogen from gaseous ammonia transport. The New Phytologist. PMID 34077566 DOI: 10.1111/nph.17527 |
0.306 |
|
| 2021 |
Ceja-Navarro JA, Wang Y, Ning D, Arellano A, Ramanculova L, Yuan MM, Byer A, Craven KD, Saha MC, Brodie EL, Pett-Ridge J, Firestone MK. Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop. Microbiome. 9: 96. PMID 33910643 DOI: 10.1186/s40168-021-01042-9 |
0.596 |
|
| 2021 |
Hungate BA, Marks JC, Power ME, Schwartz E, van Groenigen KJ, Blazewicz SJ, Chuckran P, Dijkstra P, Finley BK, Firestone MK, Foley M, Greenlon A, Hayer M, Hofmockel KS, Koch BJ, ... ... Pett-Ridge J, et al. The Functional Significance of Bacterial Predators. Mbio. 12. PMID 33906922 DOI: 10.1128/mBio.00466-21 |
0.751 |
|
| 2021 |
Yuan MM, Kakouridis A, Starr E, Nguyen N, Shi S, Pett-Ridge J, Nuccio E, Zhou J, Firestone M. Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches. Mbio. 12. PMID 33879589 DOI: 10.1128/mBio.03509-20 |
0.66 |
|
| 2021 |
Wang C, Morrissey EM, Mau RL, Hayer M, Piñeiro J, Mack MC, Marks JC, Bell SL, Miller SN, Schwartz E, Dijkstra P, Koch BJ, Stone BW, Purcell AM, Blazewicz SJ, ... ... Pett-Ridge J, et al. The temperature sensitivity of soil: microbial biodiversity, growth, and carbon mineralization. The Isme Journal. PMID 33782569 DOI: 10.1038/s41396-021-00959-1 |
0.769 |
|
| 2020 |
Waring BG, Sulman BN, Reed S, Smith AP, Averill C, Creamer CA, Cusack DF, Hall SJ, Jastrow JD, Jilling A, Kemner KM, Kleber M, Liu XA, Pett-Ridge J, Schulz M. From pools to flow: The PROMISE framework for new insights on soil carbon cycling in a changing world. Global Change Biology. PMID 33064359 DOI: 10.1111/gcb.15365 |
0.451 |
|
| 2020 |
Aigle A, Gubry-Rangin C, Thion C, Estera-Molina K, Richmond H, Pett-Ridge J, Firestone MK, Nicol G, Prosser J. Experimental testing of hypotheses for temperature- and pH-based niche specialisation of ammonia oxidising archaea and bacteria. Environmental Microbiology. PMID 32783333 DOI: 10.1111/1462-2920.15192 |
0.491 |
|
| 2020 |
Sieradzki ET, Koch BJ, Greenlon A, Sachdeva R, Malmstrom RR, Mau RL, Blazewicz SJ, Firestone MK, Hofmockel KS, Schwartz E, Hungate BA, Pett-Ridge J. Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design. Msystems. 5. PMID 32694124 DOI: 10.1128/mSystems.00151-20 |
0.752 |
|
| 2020 |
Blazewicz SJ, Hungate BA, Koch BJ, Nuccio EE, Morrissey E, Brodie EL, Schwartz E, Pett-Ridge J, Firestone MK. Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil. The Isme Journal. PMID 32203117 DOI: 10.1038/S41396-020-0617-3 |
0.796 |
|
| 2020 |
Nuccio EE, Starr E, Karaoz U, Brodie EL, Zhou J, Tringe SG, Malmstrom RR, Woyke T, Banfield JF, Firestone MK, Pett-Ridge J. Niche differentiation is spatially and temporally regulated in the rhizosphere. The Isme Journal. PMID 31953507 DOI: 10.1038/S41396-019-0582-X |
0.711 |
|
| 2020 |
Lin Y, Campbell AN, Bhattacharyya A, DiDonato N, Thompson AM, Tfaily MM, Nico PS, Silver WL, Pett-Ridge J. Differential effects of redox conditions on the decomposition of litter and soil organic matter Biogeosciences Discussions. 1-25. DOI: 10.5194/Bg-2020-59 |
0.549 |
|
| 2020 |
Dove NC, Arogyaswamy K, Billings SA, Botthoff JK, Carey CJ, Cisco C, DeForest JL, Fairbanks D, Fierer N, Gallery RE, Kaye JP, Lohse KA, Maltz MR, Mayorga E, Pett-Ridge J, et al. Continental-scale patterns of extracellular enzyme activity in the subsoil: an overlooked reservoir of microbial activity Environmental Research Letters. DOI: 10.1088/1748-9326/Abb0B3 |
0.525 |
|
| 2020 |
Sher Y, Baker NR, Herman D, Fossum C, Hale L, Zhang X, Nuccio E, Saha M, Zhou J, Pett-Ridge J, Firestone M. Corrigendum to “Microbial extracellular polysaccharide production and aggregate stability controlled by Switchgrass (Panicum virgatum) root biomass and soil water potential” [Soil Biology and Biochemistry 143 (2020) 107741] Soil Biology & Biochemistry. 148: 107907. DOI: 10.1016/J.Soilbio.2020.107907 |
0.654 |
|
| 2020 |
Sher Y, Baker NR, Herman D, Fossum C, Hale L, Zhang X, Nuccio E, Saha M, Zhou J, Pett-Ridge J, Firestone M. Microbial extracellular polysaccharide production and aggregate stability controlled by switchgrass (Panicum virgatum) root biomass and soil water potential Soil Biology and Biochemistry. 143: 107742. DOI: 10.1016/J.Soilbio.2020.107742 |
0.686 |
|
| 2019 |
Sevim V, Lee J, Egan R, Clum A, Hundley H, Lee J, Everroad RC, Detweiler AM, Bebout BM, Pett-Ridge J, Göker M, Murray AE, Lindemann SR, Klenk HP, O'Malley R, et al. Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies. Scientific Data. 6: 285. PMID 31772173 DOI: 10.1038/S41597-019-0287-Z |
0.323 |
|
| 2019 |
Starr EP, Nuccio EE, Pett-Ridge J, Banfield JF, Firestone MK. Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil. Proceedings of the National Academy of Sciences of the United States of America. PMID 31772013 DOI: 10.1073/Pnas.1908291116 |
0.685 |
|
| 2019 |
Gross A, Lin Y, Weber PK, Pett-Ridge J, Silver WL. The role of soil redox conditions in microbial phosphorus cycling in humid tropical forests. Ecology. PMID 31715005 DOI: 10.1002/Ecy.2928 |
0.402 |
|
| 2019 |
Brewer TE, Aronson EL, Arogyaswamy K, Billings SA, Botthoff JK, Campbell AN, Dove NC, Fairbanks D, Gallery RE, Hart SC, Kaye J, King G, Logan G, Lohse KA, Maltz MR, ... ... Pett-Ridge J, et al. Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons. Mbio. 10. PMID 31575762 DOI: 10.1128/Mbio.01318-19 |
0.718 |
|
| 2019 |
Mayali X, Weber PK, Nuccio E, Lietard J, Somoza M, Blazewicz SJ, Pett-Ridge J. Chip-SIP: Stable Isotope Probing Analyzed with rRNA-Targeted Microarrays and NanoSIMS. Methods in Molecular Biology (Clifton, N.J.). 2046: 71-87. PMID 31407297 DOI: 10.1007/978-1-4939-9721-3_6 |
0.738 |
|
| 2019 |
Zengler K, Hofmockel K, Baliga NS, Behie SW, Bernstein HC, Brown JB, Dinneny JR, Floge SA, Forry SP, Hess M, Jackson SA, Jansson C, Lindemann SR, Pett-Ridge J, Maranas C, et al. EcoFABs: advancing microbiome science through standardized fabricated ecosystems. Nature Methods. PMID 31227812 DOI: 10.1038/S41592-019-0465-0 |
0.379 |
|
| 2019 |
Morrissey EM, Mau RL, Hayer M, Liu XA, Schwartz E, Dijkstra P, Koch BJ, Allen K, Blazewicz SJ, Hofmockel K, Pett-Ridge J, Hungate BA. Evolutionary history constrains microbial traits across environmental variation. Nature Ecology & Evolution. PMID 31209289 DOI: 10.1038/S41559-019-0918-Y |
0.737 |
|
| 2019 |
Li J, Mau RL, Dijkstra P, Koch BJ, Schwartz E, Liu XA, Morrissey EM, Blazewicz SJ, Pett-Ridge J, Stone BW, Hayer M, Hungate BA. Predictive genomic traits for bacterial growth in culture versus actual growth in soil. The Isme Journal. PMID 31053828 DOI: 10.1038/S41396-019-0422-Z |
0.754 |
|
| 2019 |
Ceja-Navarro JA, Karaoz U, Bill M, Hao Z, White RA, Arellano A, Ramanculova L, Filley TR, Berry TD, Conrad ME, Blackwell M, Nicora CD, Kim YM, Reardon PN, Lipton MS, ... ... Pett-Ridge J, et al. Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle. Nature Microbiology. PMID 30858574 DOI: 10.1038/S41564-019-0384-Y |
0.391 |
|
| 2018 |
Bhattacharyya A, Campbell AN, Tfaily MM, Lin Y, Kukkadapu RK, Silver W, Nico PS, Pett-Ridge J. Redox fluctuations control the coupled cycling of iron and carbon in tropical forest soils. Environmental Science & Technology. PMID 30451506 DOI: 10.1021/Acs.Est.8B03408 |
0.484 |
|
| 2018 |
Lee JZ, Everroad RC, Karaoz U, Detweiler AM, Pett-Ridge J, Weber PK, Prufert-Bebout L, Bebout BM. Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat. Plos One. 13: e0202792. PMID 30204767 DOI: 10.1371/Journal.Pone.0202792 |
0.432 |
|
| 2018 |
Whitman T, Neurath R, Perera A, Chu-Jacoby I, Ning D, Zhou J, Nico P, Pett-Ridge J, Firestone M. Microbial community assembly differs across minerals in a rhizosphere microcosm. Environmental Microbiology. PMID 30047192 DOI: 10.1111/1462-2920.14366 |
0.662 |
|
| 2018 |
Gross A, Pett-Ridge J, Silver W. Soil Oxygen Limits Microbial Phosphorus Utilization in Humid Tropical Forest Soils Soil Systems. 2: 65. DOI: 10.3390/soilsystems2040065 |
0.392 |
|
| 2018 |
Souza IF, Almeida LFJ, Jesus GL, Pett-Ridge J, Nico PS, Kleber M, Silva IR. Carbon Sink Strength of Subsurface Horizons in Brazilian Oxisols Soil Science Society of America Journal. 82: 76-86. DOI: 10.2136/Sssaj2017.05.0143 |
0.449 |
|
| 2018 |
Lin Y, Bhattacharyya A, Campbell AN, Nico PS, Pett-Ridge J, Silver WL. Phosphorus Fractionation Responds to Dynamic Redox Conditions in a Humid Tropical Forest Soil Journal of Geophysical Research: Biogeosciences. 123: 3016-3027. DOI: 10.1029/2018Jg004420 |
0.301 |
|
| 2018 |
Shi S, Herman DJ, He Z, Pett-Ridge J, Wu L, Zhou J, Firestone MK. Plant roots alter microbial functional genes supporting root litter decomposition Soil Biology and Biochemistry. 127: 90-99. DOI: 10.1016/J.Soilbio.2018.09.013 |
0.668 |
|
| 2017 |
D'haeseleer P, Lee JZ, Prufert-Bebout L, Burow LC, Detweiler AM, Weber PK, Karaoz U, Brodie EL, Glavina Del Rio T, Tringe SG, Bebout BM, Pett-Ridge J. Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate. Standards in Genomic Sciences. 12: 67. PMID 29167704 DOI: 10.1186/S40793-017-0279-6 |
0.371 |
|
| 2017 |
Bryson S, Li Z, Chavez F, Weber PK, Pett-Ridge J, Hettich RL, Pan C, Mayali X, Mueller RS. Phylogenetically conserved resource partitioning in the coastal microbial loop. The Isme Journal. PMID 28800138 DOI: 10.1038/Ismej.2017.128 |
0.431 |
|
| 2017 |
Warren MJ, Lin X, Gaby JC, Kretz CB, Kolton M, Morton PL, Pett-Ridge J, Weston DJ, Schadt CW, Kostka JE, Glass JB. Molybdenum-based diazotrophy in a Sphagnum peatland in northern Minnesota. Applied and Environmental Microbiology. PMID 28667112 DOI: 10.1128/Aem.01174-17 |
0.359 |
|
| 2017 |
Pett-Ridge J, Firestone MK. Using stable isotopes to explore root-microbe-mineral interactions in soil Rhizosphere. 3: 244-253. DOI: 10.1016/J.Rhisph.2017.04.016 |
0.69 |
|
| 2016 |
Musat N, Musat F, Weber PK, Pett-Ridge J. Tracking microbial interactions with NanoSIMS. Current Opinion in Biotechnology. 41: 114-121. PMID 27419912 DOI: 10.1016/J.Copbio.2016.06.007 |
0.398 |
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| 2016 |
Stuart RK, Mayali X, Boaro AA, Zemla A, Everroad RC, Nilson D, Weber PK, Lipton M, Bebout BM, Pett-Ridge J, Thelen MP. Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm. Mbio. 7. PMID 27353754 DOI: 10.1128/Mbio.00650-16 |
0.366 |
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| 2016 |
Nuccio EE, Anderson-Furgeson J, Estera KY, Pett-Ridge J, De Valpine P, Brodie EL, Firestone MK. Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass. Ecology. 97: 1307-18. PMID 27349106 |
0.68 |
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| 2016 |
Eloe-Fadrosh EA, Paez-Espino D, Jarett J, Dunfield PF, Hedlund BP, Dekas AE, Grasby SE, Brady AL, Dong H, Briggs BR, Li WJ, Goudeau D, Malmstrom R, Pati A, Pett-Ridge J, et al. Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nature Communications. 7: 10476. PMID 26814032 DOI: 10.1038/Ncomms10476 |
0.354 |
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| 2015 |
Stuart RK, Mayali X, Lee JZ, Craig Everroad R, Hwang M, Bebout BM, Weber PK, Pett-Ridge J, Thelen MP. Cyanobacterial reuse of extracellular organic carbon in microbial mats. The Isme Journal. PMID 26495994 DOI: 10.1038/Ismej.2015.180 |
0.422 |
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| 2015 |
Keiluweit M, Nico P, Harmon ME, Mao J, Pett-Ridge J, Kleber M. Long-term litter decomposition controlled by manganese redox cycling. Proceedings of the National Academy of Sciences of the United States of America. 112: E5253-60. PMID 26372954 DOI: 10.1073/Pnas.1508945112 |
0.415 |
|
| 2015 |
Shi S, Nuccio E, Herman DJ, Rijkers R, Estera K, Li J, da Rocha UN, He Z, Pett-Ridge J, Brodie EL, Zhou J, Firestone M. Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons. Mbio. 6. PMID 26242625 DOI: 10.1128/Mbio.00746-15 |
0.704 |
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| 2015 |
Mueller RS, Bryson S, Kieft B, Li Z, Pett-Ridge J, Chavez F, Hettich RL, Pan C, Mayali X. Metagenome sequencing of a coastal marine microbial community from monterey bay, california. Genome Announcements. 3. PMID 25931598 DOI: 10.1128/Genomea.00341-15 |
0.412 |
|
| 2015 |
Woebken D, Burow LC, Behnam F, Mayali X, Schintlmeister A, Fleming ED, Prufert-Bebout L, Singer SW, Cortés AL, Hoehler TM, Pett-Ridge J, Spormann AM, Wagner M, Weber PK, Bebout BM. Revisiting N₂ fixation in Guerrero Negro intertidal microbial mats with a functional single-cell approach. The Isme Journal. 9: 485-96. PMID 25303712 DOI: 10.1038/Ismej.2014.144 |
0.403 |
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| 2015 |
Keiluweit M, Bougoure JJ, Nico PS, Pett-Ridge J, Weber PK, Kleber M. Mineral protection of soil carbon counteracted by root exudates Nature Climate Change. 5: 588-595. DOI: 10.1038/Nclimate2580 |
0.506 |
|
| 2015 |
Porder S, Johnson AH, Xing HX, Brocard G, Goldsmith S, Pett-Ridge J. Linking geomorphology, weathering and cation availability in the Luquillo Mountains of Puerto Rico Geoderma. 249: 100-110. DOI: 10.1016/J.Geoderma.2015.03.002 |
0.312 |
|
| 2015 |
Siebert C, Pett-Ridge JC, Opfergelt S, Guicharnaud RA, Halliday AN, Burton KW. Molybdenum isotope fractionation in soils: Influence of redox conditions, organic matter, and atmospheric inputs Geochimica Et Cosmochimica Acta. 162: 1-24. DOI: 10.1016/J.Gca.2015.04.007 |
0.395 |
|
| 2015 |
King EK, Thompson A, Chadwick OA, Pett-Ridge JC. Molybdenum sources and isotopic composition during early stages of pedogenesis along a basaltic climate transect Chemical Geology. DOI: 10.1016/J.Chemgeo.2016.01.024 |
0.41 |
|
| 2015 |
McClintock MA, Brocard G, Willenbring J, Tamayo C, Porder S, Pett-Ridge JC. Spatial variability of African dust in soils in a montane tropical landscape in Puerto Rico Chemical Geology. 412: 69-81. DOI: 10.1016/J.Chemgeo.2015.06.032 |
0.414 |
|
| 2015 |
Marks JA, Perakis SS, King EK, Pett-Ridge J. Soil organic matter regulates molybdenum storage and mobility in forests Biogeochemistry. DOI: 10.1007/S10533-015-0121-4 |
0.451 |
|
| 2014 |
Mayali X, Weber PK, Mabery S, Pett-Ridge J. Phylogenetic patterns in the microbial response to resource availability: amino acid incorporation in San Francisco Bay. Plos One. 9: e95842. PMID 24752604 DOI: 10.1371/Journal.Pone.0095842 |
0.418 |
|
| 2014 |
Burow LC, Woebken D, Marshall IP, Singer SW, Pett-Ridge J, Prufert-Bebout L, Spormann AM, Bebout BM, Weber PK, Hoehler TM. Identification of Desulfobacterales as primary hydrogenotrophs in a complex microbial mat community. Geobiology. 12: 221-30. PMID 24730641 DOI: 10.1111/Gbi.12080 |
0.328 |
|
| 2014 |
Lee JZ, Burow LC, Woebken D, Everroad RC, Kubo MD, Spormann AM, Weber PK, Pett-Ridge J, Bebout BM, Hoehler TM. Fermentation couples Chloroflexi and sulfate-reducing bacteria to Cyanobacteria in hypersaline microbial mats. Frontiers in Microbiology. 5: 61. PMID 24616716 DOI: 10.3389/Fmicb.2014.00061 |
0.367 |
|
| 2014 |
Ceja-Navarro JA, Nguyen NH, Karaoz U, Gross SR, Herman DJ, Andersen GL, Bruns TD, Pett-Ridge J, Blackwell M, Brodie EL. Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus. The Isme Journal. 8: 6-18. PMID 23985746 DOI: 10.1038/Ismej.2013.134 |
0.4 |
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| 2013 |
Carpenter KJ, Weber PK, Davisson ML, Pett-Ridge J, Haverty MI, Keeling PJ. Correlated SEM, FIB-SEM, TEM, and NanoSIMS imaging of microbes from the hindgut of a lower termite: methods for in situ functional and ecological studies of uncultivable microbes. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 19: 1490-501. PMID 24119340 DOI: 10.1017/S1431927613013482 |
0.363 |
|
| 2013 |
Pett-Ridge J, Petersen DG, Nuccio E, Firestone MK. Influence of oxic/anoxic fluctuations on ammonia oxidizers and nitrification potential in a wet tropical soil. Fems Microbiology Ecology. 85: 179-94. PMID 23556538 DOI: 10.1111/1574-6941.12111 |
0.671 |
|
| 2013 |
Nuccio EE, Hodge A, Pett-Ridge J, Herman DJ, Weber PK, Firestone MK. An arbuscular mycorrhizal fungus significantly modifies the soil bacterial community and nitrogen cycling during litter decomposition. Environmental Microbiology. 15: 1870-81. PMID 23360621 DOI: 10.1111/1462-2920.12081 |
0.677 |
|
| 2013 |
Burow LC, Woebken D, Marshall IP, Lindquist EA, Bebout BM, Prufert-Bebout L, Hoehler TM, Tringe SG, Pett-Ridge J, Weber PK, Spormann AM, Singer SW. Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics. The Isme Journal. 7: 817-29. PMID 23190731 DOI: 10.1038/Ismej.2012.150 |
0.394 |
|
| 2013 |
Mayali X, Weber PK, Pett-Ridge J. Taxon-specific C/N relative use efficiency for amino acids in an estuarine community. Fems Microbiology Ecology. 83: 402-12. PMID 22994392 DOI: 10.1111/J.1574-6941.12000.X |
0.357 |
|
| 2013 |
Keech AR, West AJ, Pett-Ridge JC, Henderson GM. Evaluating U-series tools for weathering rate and duration on a soil sequence of known ages Earth and Planetary Science Letters. 374: 24-35. DOI: 10.1016/J.Epsl.2013.04.032 |
0.36 |
|
| 2013 |
Mueller CW, Weber PK, Kilburn MR, Hoeschen C, Kleber M, Pett-Ridge J. Advances in the analysis of biogeochemical interfaces. Nanosims to investigate soil microenvironments Advances in Agronomy. 121: 1-46. DOI: 10.1016/B978-0-12-407685-3.00001-3 |
0.472 |
|
| 2012 |
Pett-Ridge J, Weber PK. NanoSIP: NanoSIMS applications for microbial biology. Methods in Molecular Biology (Clifton, N.J.). 881: 375-408. PMID 22639220 DOI: 10.1007/978-1-61779-827-6_13 |
0.354 |
|
| 2012 |
Woebken D, Burow LC, Prufert-Bebout L, Bebout BM, Hoehler TM, Pett-Ridge J, Spormann AM, Weber PK, Singer SW. Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis. The Isme Journal. 6: 1427-39. PMID 22237543 DOI: 10.1038/Ismej.2011.200 |
0.349 |
|
| 2012 |
Mayali X, Weber PK, Brodie EL, Mabery S, Hoeprich PD, Pett-Ridge J. High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use. The Isme Journal. 6: 1210-21. PMID 22158395 DOI: 10.1038/Ismej.2011.175 |
0.413 |
|
| 2012 |
Keiluweit M, Bougoure JJ, Zeglin LH, Myrold DD, Weber PK, Pett-Ridge J, Kleber M, Nico PS. Nano-scale investigation of the association of microbial nitrogen residues with iron (hydr)oxides in a forest soil O-horizon Geochimica Et Cosmochimica Acta. 95: 213-226. DOI: 10.1016/J.Gca.2012.07.001 |
0.511 |
|
| 2012 |
Treseder KK, Balser TC, Bradford MA, Brodie EL, Dubinsky EA, Eviner VT, Hofmockel KS, Lennon JT, Levine UY, MacGregor BJ, Pett-Ridge J, Waldrop MP. Integrating microbial ecology into ecosystem models: Challenges and priorities Biogeochemistry. 109: 7-18. DOI: 10.1007/S10533-011-9636-5 |
0.757 |
|
| 2011 |
Myrold DD, Pett-Ridge J, Bottomley PJ. Nitrogen mineralization and assimilation at millimeter scales. Methods in Enzymology. 496: 91-114. PMID 21514461 DOI: 10.1016/J.Soilbio.2006.10.005 |
0.437 |
|
| 2011 |
Brantley SL, Megonigal JP, Scatena FN, Balogh-Brunstad Z, Barnes RT, Bruns MA, Van Cappellen P, Dontsova K, Hartnett HE, Hartshorn AS, Heimsath A, Herndon E, Jin L, Keller CK, Leake JR, ... Pett-Ridge J, et al. Twelve testable hypotheses on the geobiology of weathering. Geobiology. 9: 140-65. PMID 21231992 DOI: 10.1111/J.1472-4669.2010.00264.X |
0.323 |
|
| 2009 |
Finzi-Hart JA, Pett-Ridge J, Weber PK, Popa R, Fallon SJ, Gunderson T, Hutcheon ID, Nealson KH, Capone DG. Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 106: 6345-50. PMID 19332780 DOI: 10.1073/Pnas.0810547106 |
0.311 |
|
| 2009 |
Pett-Ridge JC. Contributions of dust to phosphorus cycling in tropical forests of the Luquillo Mountains, Puerto Rico Biogeochemistry. 94: 63-80. DOI: 10.1007/S10533-009-9308-X |
0.344 |
|
| 2008 |
Templer PH, Silver WL, Pett-Ridge J, M DeAngelis K, Firestone MK. PLANT AND MICROBIAL CONTROLS ON NITROGEN RETENTION AND LOSS IN A HUMID TROPICAL FOREST. Ecology. 89: 3030-3040. PMID 31766805 DOI: 10.1890/07-1631.1 |
0.628 |
|
| 2008 |
Behrens S, Lösekann T, Pett-Ridge J, Weber PK, Ng WO, Stevenson BS, Hutcheon ID, Relman DA, Spormann AM. Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS. Applied and Environmental Microbiology. 74: 3143-50. PMID 18359832 DOI: 10.1128/Aem.00191-08 |
0.349 |
|
| 2008 |
Templer PH, Silver WL, Pett-Ridge J, DeAngelis KM, Firestone MK. Plant and microbial controls on nitrogen retention and loss in a humid tropical forest Ecology. 89: 3030-3040. DOI: 10.1890/07-1631.1 |
0.706 |
|
| 2007 |
Popa R, Weber PK, Pett-Ridge J, Finzi JA, Fallon SJ, Hutcheon ID, Nealson KH, Capone DG. Carbon and nitrogen fixation and metabolite exchange in and between individual cells of Anabaena oscillarioides. The Isme Journal. 1: 354-60. PMID 18043646 DOI: 10.1038/Ismej.2007.44 |
0.345 |
|
| 2007 |
Herrmann AM, Ritz K, Nunan N, Clode PL, Pett-Ridge J, Kilburn MR, Murphy DV, O'Donnell AG, Stockdale EA. Nano-scale secondary ion mass spectrometry - A new analytical tool in biogeochemistry and soil ecology: A review article Soil Biology and Biochemistry. 39: 1835-1850. DOI: 10.1016/J.Soilbio.2007.03.011 |
0.473 |
|
| 2007 |
Pardo LH, Hemond HF, Montoya JP, Pett-Ridge J. Natural abundance 15N in soil and litter across a nitrate-output gradient in New Hampshire Forest Ecology and Management. 251: 217-230. DOI: 10.1016/j.foreco.2007.06.047 |
0.393 |
|
| 2007 |
Pett-Ridge JC, Monastra VM, Derry LA, Chadwick OA. Importance of atmospheric inputs and Fe-oxides in controlling soil uranium budgets and behavior along a Hawaiian chronosequence Chemical Geology. 244: 691-707. DOI: 10.1016/J.Chemgeo.2007.07.016 |
0.322 |
|
| 2006 |
Pett-Ridge J, Silver WL, Firestone MK. Redox fluctuations frame microbial community impacts on N-cycling rates in a humid tropical forest soil Biogeochemistry. 81: 95-110. DOI: 10.1007/S10533-006-9032-8 |
0.722 |
|
| 2005 |
Pett-Ridge J, Firestone MK. Redox fluctuation structures microbial communities in a wet tropical soil. Applied and Environmental Microbiology. 71: 6998-7007. PMID 16269735 DOI: 10.1128/Aem.71.11.6998-7007.2005 |
0.705 |
|
| 2004 |
Pardo LH, Kendall C, Pett-Ridge J, Chang CCY. Evaluating the source of streamwater nitrate using δ15N and δ18O in nitrate in two watersheds in New Hampshire, USA Hydrological Processes. 18: 2699-2712. DOI: 10.1002/Hyp.5576 |
0.336 |
|
| 2002 |
Pett-Ridge J, Silver WL. Survival, growth, and ecosystem dynamics of displaced bromeliads in a montane tropical forest Biotropica. 34: 211-224. DOI: 10.1646/0006-3606(2002)034[0211:Sgaedo]2.0.Co;2 |
0.355 |
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