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Taner Akkin, Ph.D. - Publications

Affiliations: 
2003 University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
Biomedical, Medical
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57 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Abdelfattah AS, Ahuja S, Akkin T, Allu SR, Brake J, Boas DA, Buckley EM, Campbell RE, Chen AI, Cheng X, Čižmár T, Costantini I, De Vittorio M, Devor A, Doran PR, et al. Neurophotonic tools for microscopic measurements and manipulation: status report. Neurophotonics. 9: 013001. PMID 35493335 DOI: 10.1117/1.NPh.9.S1.013001  0.476
2019 Liu CJ, Shamsan GA, Akkin T, Odde DJ. Glioma Cell Migration Dynamics in Brain Tissue Assessed by Multimodal Optical Imaging. Biophysical Journal. PMID 31474305 DOI: 10.1016/J.Bpj.2019.08.010  0.631
2019 Li T, Liu CJ, Akkin T. Contrast-enhanced serial optical coherence scanner with deep learning network reveals vasculature and white matter organization of mouse brain. Neurophotonics. 6: 035004. PMID 31338386 DOI: 10.1117/1.Nph.6.3.035004  0.658
2018 Liu CJ, Li T, Akkin T. Low-coherence interferometry for phase-sensitive measurement of optical rotation. Applied Optics. 57: 5893-5898. PMID 30118062 DOI: 10.1364/Ao.57.005893  0.718
2018 Liu CJ, Rainwater O, Brent Clark H, Orr HT, Akkin T. Polarization-sensitive optical coherence tomography reveals gray matter and white matter atrophy in SCA1 mouse models. Neurobiology of Disease. PMID 29753755 DOI: 10.1016/J.Nbd.2018.05.003  0.471
2017 Zarei V, Liu CJ, Claeson AA, Akkin T, Barocas VH. Image-based multiscale mechanical modeling shows the importance of structural heterogeneity in the human lumbar facet capsular ligament. Biomechanics and Modeling in Mechanobiology. PMID 28361294 DOI: 10.1007/S10237-017-0896-4  0.472
2017 Liu CJ, Williams KE, Orr HT, Akkin T. Visualizing and mapping the cerebellum with serial optical coherence scanner. Neurophotonics. 4: 011006. PMID 27725947 DOI: 10.1117/1.Nph.4.1.011006  0.591
2016 Liu CJ, Black AJ, Wang H, Akkin T. Quantifying three-dimensional optic axis using polarization-sensitive optical coherence tomography. Journal of Biomedical Optics. 21: 70501. PMID 27387702 DOI: 10.1117/1.Jbo.21.7.070501  0.764
2016 Wang H, Akkin T, Magnain C, Wang R, Dubb J, Kostis WJ, Yaseen MA, Cramer A, Sakadžić S, Boas D. Polarization sensitive optical coherence microscopy for brain imaging. Optics Letters. 41: 2213-2216. PMID 27176965 DOI: 10.1364/Ol.41.002213  0.595
2016 Liu C, Black AJ, Wang H, Akkin T. Quantifying axis orientation in 3D using polarization-sensitive optical coherence tomography(Conference Presentation) Proceedings of Spie. 9690. DOI: 10.1117/12.2217637  0.773
2016 Wang H, Akkin T, Magnain CV, Yaseen MA, Cramer A, Wang R, Sakadžic S, Boas DA. Ultra-high resolution polarization-sensitive optical coherence microscopy for brain imaging at 6 um, 3.4 um and 1.3 um resolution(Conference Presentation) Proceedings of Spie. 9690. DOI: 10.1117/12.2212696  0.578
2015 Black AJ, Akkin T. Polarization-based balanced detection for spectral-domain optical coherence tomography. Applied Optics. 54: 7252-7. PMID 26368760 DOI: 10.1364/Ao.54.007252  0.754
2015 Yeh YJ, Black AJ, Landowne D, Akkin T. Optical coherence tomography for cross-sectional imaging of neural activity. Neurophotonics. 2: 035001. PMID 26217674 DOI: 10.1117/1.Nph.2.3.035001  0.693
2015 Claeson AA, Yeh YJ, Black AJ, Akkin T, Barocas VH. Marker-Free Tracking of Facet Capsule Motion Using Polarization-Sensitive Optical Coherence Tomography. Annals of Biomedical Engineering. PMID 26055969 DOI: 10.1007/S10439-015-1349-9  0.702
2015 Wang H, Lenglet C, Akkin T. Structure tensor analysis of serial optical coherence scanner images for mapping fiber orientations and tractography in the brain. Journal of Biomedical Optics. 20: 036003. PMID 25741662 DOI: 10.1117/1.Jbo.20.3.036003  0.527
2014 Wang H, Zhu J, Reuter M, Vinke LN, Yendiki A, Boas DA, Fischl B, Akkin T. Cross-validation of serial optical coherence scanning and diffusion tensor imaging: a study on neural fiber maps in human medulla oblongata. Neuroimage. 100: 395-404. PMID 24954840 DOI: 10.1016/J.Neuroimage.2014.06.032  0.509
2014 Wang H, Zhu J, Akkin T. Serial optical coherence scanner for large-scale brain imaging at microscopic resolution. Neuroimage. 84: 1007-17. PMID 24099843 DOI: 10.1016/J.Neuroimage.2013.09.063  0.535
2014 Magnain C, Augustinack JC, Reuter M, Wachinger C, Frosch MP, Ragan T, Akkin T, Wedeen VJ, Boas DA, Fischl B. Blockface histology with optical coherence tomography: a comparison with Nissl staining. Neuroimage. 84: 524-33. PMID 24041872 DOI: 10.1016/J.Neuroimage.2013.08.072  0.484
2014 Akkin T, Wang H. Serial optical coherence scanner for brain imaging and mapping Conference On Lasers and Electro-Optics Europe - Technical Digest. 2014.  0.468
2013 Yeh YJ, Black AJ, Akkin T. Spectral-domain low-coherence interferometry for phase-sensitive measurement of Faraday rotation at multiple depths. Applied Optics. 52: 7165-70. PMID 24217734 DOI: 10.1364/Ao.52.007165  0.718
2012 Elkhalil H, Akkin T, Pearce J, Bischof J. Potassium titanyl phosphate laser tissue ablation: development and experimental validation of a new numerical model. Journal of Biomechanical Engineering. 134: 101002. PMID 23083193 DOI: 10.1115/1.4007452  0.306
2012 Smith RM, Black AJ, Velamakanni SS, Akkin T, Tolkacheva EG. Visualizing the complex 3D geometry of the perfusion border zone in isolated rabbit heart. Applied Optics. 51: 2713-21. PMID 22614494 DOI: 10.1364/Ao.51.002713  0.669
2012 Amini R, Whitcomb JE, Al-Qaisi MK, Akkin T, Jouzdani S, Dorairaj S, Prata T, Illitchev E, Liebmann JM, Ritch R, Barocas VH. The posterior location of the dilator muscle induces anterior iris bowing during dilation, even in the absence of pupillary block. Investigative Ophthalmology & Visual Science. 53: 1188-94. PMID 22281822 DOI: 10.1167/Iovs.11-8408  0.784
2011 Wang H, Black AJ, Zhu J, Stigen TW, Al-Qaisi MK, Netoff TI, Abosch A, Akkin T. Reconstructing micrometer-scale fiber pathways in the brain: multi-contrast optical coherence tomography based tractography. Neuroimage. 58: 984-92. PMID 21771662 DOI: 10.1016/J.Neuroimage.2011.07.005  0.799
2011 Akkin T, Davé DP. High-Resolution Phase-Contrast Optical Coherence Tomography for Functional Biomedical Imaging Advances in Optical Imaging For Clinical Medicine. 413-430. DOI: 10.1002/9780470767061.ch14  0.431
2010 Akkin T, Landowne D, Sivaprakasam A. Detection of Neural Action Potentials Using Optical Coherence Tomography: Intensity and Phase Measurements with and without Dyes. Frontiers in Neuroenergetics. 2. PMID 20844600 DOI: 10.3389/Fnene.2010.00022  0.475
2010 Al-Qaisi MK, Akkin T. Swept-source polarization-sensitive optical coherence tomography based on polarization-maintaining fiber. Optics Express. 18: 3392-403. PMID 20389349 DOI: 10.1364/Oe.18.003392  0.834
2010 Wang H, Al-Qaisi MK, Akkin T. Polarization-maintaining fiber based polarization-sensitive optical coherence tomography in spectral domain. Optics Letters. 35: 154-6. PMID 20081952 DOI: 10.1364/Ol.35.000154  0.83
2009 Al-Kaisi MK, Landowne D, Akkin T. Low coherence interferometer for sensing retardance change during neural activity. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2009: 6318-20. PMID 19964151 DOI: 10.1109/IEMBS.2009.5333179  0.43
2009 Al-Qaisi MK, Wang H, Akkin T. Measurement of Faraday rotation using phase-sensitive low-coherence interferometry. Applied Optics. 48: 5829-33. PMID 19844321 DOI: 10.1364/Ao.48.005829  0.783
2009 Akkin T, Landowne D, Sivaprakasam A. Optical coherence tomography phase measurement of transient changes in squid giant axons during activity. The Journal of Membrane Biology. 231: 35-46. PMID 19806385 DOI: 10.1007/S00232-009-9202-4  0.435
2009 Al-Qaisi MK, Akkin T. Polarization-maintaining fiber-based optical coherence tomography for polarization-sensitive measurements Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7168. DOI: 10.1117/12.808621  0.828
2009 Amini R, Whitcomb JE, Al-Qaisi MK, Akkin T, Barocas VH. The effect of the posterior location of the dilator on the iris concavity Proceedings of the Asme Summer Bioengineering Conference 2009, Sbc2009. 973-974. DOI: 10.1115/SBC2009-205186  0.728
2009 Akkin T, Landowne D, Sivaprakasam A. OCT measurement of neural structure and function Conference Proceedings - Lasers and Electro-Optics Society Annual Meeting-Leos. 203-204. DOI: 10.1109/LEOS.2009.5343315  0.424
2008 Al-Qaisi MK, Akkin T. Polarization-sensitive optical coherence tomography based on polarization-maintaining fibers and frequency multiplexing. Optics Express. 16: 13032-41. PMID 18711542 DOI: 10.1364/Oe.16.013032  0.831
2008 Al-Kaisi MK, Akkin T. Imaging Depth-Resolved Tissue Birefringence With a Single Detector Journal of Medical Devices-Transactions of the Asme. 2: 27559. DOI: 10.1115/1.2936214  0.463
2007 Akkin T, Joo C, de Boer JF. Depth-resolved measurement of transient structural changes during action potential propagation. Biophysical Journal. 93: 1347-53. PMID 17526590 DOI: 10.1529/Biophysj.106.091298  0.634
2007 Akkin T, Sivaprakasam A, Becker JA. Optical imaging of neural structure and function Wmsci 2007 - the 11th World Multi-Conference On Systemics, Cybernetics and Informatics, Jointly With the 13th International Conference On Information Systems Analysis and Synthesis, Isas 2007 - Proc.. 5: 283-286.  0.371
2005 Mujat M, Chan R, Cense B, Park B, Joo C, Akkin T, Chen T, de Boer J. Retinal nerve fiber layer thickness map determined from optical coherence tomography images. Optics Express. 13: 9480-91. PMID 19503151 DOI: 10.1364/Opex.13.009480  0.604
2005 Joo C, Akkin T, Cense B, Park BH, de Boer JF. Spectral-domain optical coherence phase microscopy for quantitative phase-contrast imaging. Optics Letters. 30: 2131-3. PMID 16127933 DOI: 10.1364/Ol.30.002131  0.651
2005 Cense B, Chen TC, Mujat M, Joo C, Akkin T, Park BH, Pierce MC, Yun A, Bouma BE, Tearaey GJ, De Boer JF. Spectral-domain polarization-sensitive optical coherence tomography at 850 nm Progress in Biomedical Optics and Imaging - Proceedings of Spie. 5690: 159-162. DOI: 10.1117/12.592840  0.689
2005 Akkin T, Davé DP, Rylander HG, Milner TE. Non-contact sub-nanometer measurement of transient surface displacement during action potential propagation Progress in Biomedical Optics and Imaging - Proceedings of Spie. 5690: 408-411. DOI: 10.1117/12.592026  0.711
2004 Akkin T, Davé D, Milner T, Rylander Iii H. Detection of neural activity using phase-sensitive optical low-coherence reflectometry. Optics Express. 12: 2377-86. PMID 19475074 DOI: 10.1364/Opex.12.002377  0.655
2004 Rylander CG, Davé DP, Akkin T, Milner TE, Diller KR, Welch AJ. Quantitative phase-contrast imaging of cells with phase-sensitive optical coherence microscopy. Optics Letters. 29: 1509-11. PMID 15259729 DOI: 10.1364/Ol.29.001509  0.655
2004 Larin KV, Akkin T, Esenaliev RO, Motamedi M, Milner TE. Phase-sensitive optical low-coherence reflectometry for the detection of analyte concentrations. Applied Optics. 43: 3408-14. PMID 15219020 DOI: 10.1364/Ao.43.003408  0.574
2004 Youn JI, Akkin T, Milner TE. Electrokinetic measurement of cartilage using differential phase optical coherence tomography. Physiological Measurement. 25: 85-95. PMID 15005307 DOI: 10.1088/0967-3334/25/1/008  0.713
2004 Telenkov SA, Dave DP, Sethuraman S, Akkin T, Milner TE. Differential phase optical coherence probe for depth-resolved detection of photothermal response in tissue. Physics in Medicine and Biology. 49: 111-9. PMID 14971776 DOI: 10.1088/0031-9155/49/1/008  0.658
2004 Akkin T, Davé DP, Milner TE, Rylander HG. Detection of neural activity using phase-sensitive optical low-coherence reflectometry Optics Express. 12: 2377-2386. DOI: 10.1364/OPEX.12.002377  0.698
2004 Larin KV, Akkin T, Milner TE, Dave DP, Motamedi M, Esenaliev RO. Measurement of refractive index variation of physiological analytes using differential phase OCT Proceedings of Spie - the International Society For Optical Engineering. 5325: 31-34. DOI: 10.1117/12.532004  0.57
2004 Zaatari HN, Kemp NJ, Akkin T, Rylander HG, Milner TE. Polarization-sensitive optical coherence tomography with de-correlated channels Proceedings of Spie - the International Society For Optical Engineering. 5316: 360-364. DOI: 10.1117/12.531329  0.803
2003 Akkin T, Davé DP, Youn JI, Telenkov SA, Rylander HG, Milner TE. Imaging tissue response to electrical and photothermal stimulation with nanometer sensitivity. Lasers in Surgery and Medicine. 33: 219-25. PMID 14571445 DOI: 10.1002/Lsm.10221  0.787
2003 Davé DP, Akkin T, Milner TE. Polarization-maintaining fiber-based optical low-coherence reflectometer for characterization and ranging of birefringence. Optics Letters. 28: 1775-7. PMID 14514097 DOI: 10.1364/Ol.28.001775  0.693
2003 Youn JI, Akkin T, Wong BJF, Peavy GM, Milner TE. Depth-Resolved Detection of Electrokinetic Effects in Cartilage using Differential Phase Sensitive Optical Coherence Tomography Proceedings of Spie - the International Society For Optical Engineering. 4949: 319-324. DOI: 10.1117/12.485144  0.604
2003 Akkin T, Davé DP, Rylander HG, Milner TE. Applications of fiber-based phase sensitive optical low coherence reflectometer Proceedings of Spie - the International Society For Optical Engineering. 4957: 29-33. DOI: 10.1117/12.479853  0.769
2002 Akkin T, Davé DP, Milner TE, Rylander HG. Interferometric fiber-based optical biosensor to measure ultra-small changes in refractive index Proceedings of Spie - the International Society For Optical Engineering. 4616: 9-13. DOI: 10.1117/12.463805  0.77
2002 Akkin T, Rylander HG, Davé DP, Milner TE. Fiber-based phase-sensitive optical low coherence reflectometer for birefringence imaging of nerves Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 3: 2301-2302.  0.739
2001 Davé DP, Akkin T, Milner TE, Rylander HG. Phase-sensitive frequency-multiplexed optical low-coherence reflectometery Optics Communications. 193: 39-43. DOI: 10.1016/S0030-4018(01)01195-6  0.73
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