| Year |
Citation |
Score |
| 2024 |
Zhou Y, Myung Y, Rodrigues CHM, Ascher DB. DDMut-PPI: predicting effects of mutations on protein-protein interactions using graph-based deep learning. Nucleic Acids Research. PMID 38783112 DOI: 10.1093/nar/gkae412 |
0.603 |
|
| 2024 |
Gu X, Kovacs AS, Myung Y, Ascher DB. Mutations in Glycosyltransferases and Glycosidases: Implications for Associated Diseases. Biomolecules. 14. PMID 38672513 DOI: 10.3390/biom14040497 |
0.652 |
|
| 2024 |
Myung Y, de Sá AGC, Ascher DB. Deep-PK: deep learning for small molecule pharmacokinetic and toxicity prediction. Nucleic Acids Research. PMID 38634808 DOI: 10.1093/nar/gkae254 |
0.546 |
|
| 2023 |
Al-Jarf R, Karmakar M, Myung Y, Ascher DB. Uncovering the Molecular Drivers of NHEJ DNA Repair-Implicated Missense Variants and Their Functional Consequences. Genes. 14. PMID 37895239 DOI: 10.3390/genes14101890 |
0.738 |
|
| 2023 |
Myung Y, Pires DEV, Ascher DB. Understanding the complementarity and plasticity of antibody-antigen interfaces. Bioinformatics (Oxford, England). 39. PMID 37382557 DOI: 10.1093/bioinformatics/btad392 |
0.488 |
|
| 2022 |
Ascher DB, Kaminskas LM, Myung Y, Pires DEV. Using Graph-Based Signatures to Guide Rational Antibody Engineering. Methods in Molecular Biology (Clifton, N.J.). 2552: 375-397. PMID 36346604 DOI: 10.1007/978-1-0716-2609-2_21 |
0.543 |
|
| 2022 |
Tichkule S, Myung Y, Naung MT, Ansell BRE, Guy AJ, Srivastava N, Mehra S, Cacciò SM, Mueller I, Barry AE, van Oosterhout C, Pope B, Ascher DB, Jex AR. VIVID: A Web Application for Variant Interpretation and Visualization in Multi-dimensional Analyses. Molecular Biology and Evolution. 39. PMID 36103257 DOI: 10.1093/molbev/msac196 |
0.615 |
|
| 2022 |
Ruff KM, Choi YH, Cox D, Ormsby AR, Myung Y, Ascher DB, Radford SE, Pappu RV, Hatters DM. Sequence grammar underlying the unfolding and phase separation of globular proteins. Molecular Cell. PMID 35853451 DOI: 10.1016/j.molcel.2022.06.024 |
0.535 |
|
| 2021 |
Nguyen TB, Myung Y, de Sá AGC, Pires DEV, Ascher DB. mmCSM-NA: accurately predicting effects of single and multiple mutations on protein-nucleic acid binding affinity. Nar Genomics and Bioinformatics. 3: lqab109. PMID 34805992 DOI: 10.1093/nargab/lqab109 |
0.722 |
|
| 2021 |
Myung Y, Pires DEV, Ascher DB. CSM-AB: graph-based antibody-antigen binding affinity prediction and docking scoring function. Bioinformatics (Oxford, England). PMID 34734992 DOI: 10.1093/bioinformatics/btab762 |
0.498 |
|
| 2021 |
da Silva BM, Myung Y, Ascher DB, Pires DEV. epitope3D: a machine learning method for conformational B-cell epitope prediction. Briefings in Bioinformatics. PMID 34676398 DOI: 10.1093/bib/bbab423 |
0.504 |
|
| 2021 |
Lin H, Ascher DB, Myung Y, Lamborg CH, Hallam SJ, Gionfriddo CM, Holt KE, Moreau JW. Mercury methylation by metabolically versatile and cosmopolitan marine bacteria. The Isme Journal. PMID 33504941 DOI: 10.1038/s41396-020-00889-4 |
0.488 |
|
| 2021 |
Portelli S, Olshansky M, Rodrigues CHM, D'Souza EN, Myung Y, Silk M, Alavi A, Pires DEV, Ascher DB. Author Correction: Exploring the structural distribution of genetic variation in SARS-CoV-2 with the COVID-3D online resource. Nature Genetics. PMID 33398199 DOI: 10.1038/s41588-020-00775-x |
0.741 |
|
| 2021 |
Airey E, Portelli S, Xavier JS, Myung YC, Silk M, Karmakar M, Velloso JPL, Rodrigues CHM, Parate HH, Garg A, Al-Jarf R, Barr L, Geraldo JA, Rezende PM, Pires DEV, et al. Identifying Genotype-Phenotype Correlations via Integrative Mutation Analysis. Methods in Molecular Biology (Clifton, N.J.). 2190: 1-32. PMID 32804359 DOI: 10.1007/978-1-0716-0826-5_1 |
0.623 |
|
| 2020 |
Portelli S, Myung Y, Furnham N, Vedithi SC, Pires DEV, Ascher DB. Prediction of rifampicin resistance beyond the RRDR using structure-based machine learning approaches. Scientific Reports. 10: 18120. PMID 33093532 DOI: 10.1038/s41598-020-74648-y |
0.776 |
|
| 2020 |
Portelli S, Olshansky M, Rodrigues CHM, D'Souza EN, Myung Y, Silk M, Alavi A, Pires DEV, Ascher DB. Exploring the structural distribution of genetic variation in SARS-CoV-2 with the COVID-3D online resource. Nature Genetics. PMID 32908256 DOI: 10.1038/s41588-020-0693-3 |
0.742 |
|
| 2020 |
Myung Y, Pires DEV, Ascher DB. mmCSM-AB: guiding rational antibody engineering through multiple point mutations. Nucleic Acids Research. PMID 32432715 DOI: 10.1093/nar/gkaa389 |
0.562 |
|
| 2020 |
Pires DEV, Veloso WNP, Myung Y, Rodrigues CHM, Silk M, Rezende PM, Silva F, Xavier JS, Velloso JPL, da Silveira CH, Ascher DB. EasyVS: a user friendly web based tool for molecule library selection and structure-based virtual screening. Bioinformatics (Oxford, England). PMID 32399551 DOI: 10.1093/bioinformatics/btaa480 |
0.689 |
|
| 2020 |
Pires DEV, Portelli S, Rezende PM, Veloso WNP, Xavier JS, Karmakar M, Myung Y, Linhares JPV, Rodrigues CHM, Silk M, Ascher DB. A Comprehensive Computational Platform to Guide Drug Development Using Graph-Based Signature Methods. Methods in Molecular Biology (Clifton, N.J.). 2112: 91-106. PMID 32006280 DOI: 10.1007/978-1-0716-0270-6_7 |
0.693 |
|
| 2019 |
Myung Y, Rodrigues CHM, Ascher DB, Pires DEV. mCSM-AB2: Guiding Rational Antibody Design Using Graph-Based Signatures. Bioinformatics (Oxford, England). PMID 31665262 DOI: 10.1093/bioinformatics/btz779 |
0.52 |
|
| 2019 |
Rodrigues CHM, Myung Y, Pires DEV, Ascher DB. mCSM-PPI2: predicting the effects of mutations on protein-protein interactions. Nucleic Acids Research. PMID 31114883 DOI: 10.1093/nar/gkz383 |
0.619 |
|
| 2019 |
Pires DEV, Rodrigues CHM, Albanaz ATS, Karmakar M, Myung Y, Xavier J, Michanetzi EM, Portelli S, Ascher DB. Exploring Protein Supersecondary Structure Through Changes in Protein Folding, Stability, and Flexibility. Methods in Molecular Biology (Clifton, N.J.). 1958: 173-185. PMID 30945219 DOI: 10.1007/978-1-4939-9161-7_9 |
0.772 |
|
| Show low-probability matches. |