| Year |
Citation |
Score |
| 2022 |
Unni DR, Moxon SAT, Bada M, Brush M, Bruskiewich R, Caufield JH, Clemons PA, Dancik V, Dumontier M, Fecho K, Glusman G, Hadlock JJ, Harris NL, Joshi A, Putman T, et al. Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science. Clinical and Translational Science. 15: 1848-1855. PMID 36125173 DOI: 10.1111/cts.13302 |
0.305 |
|
| 2017 |
Bada M, Vasilevsky N, Baumgartner WA, Haendel M, Hunter LE. Gold-standard ontology-based anatomical annotation in the CRAFT Corpus. Database : the Journal of Biological Databases and Curation. 2017. PMID 31725864 DOI: 10.1093/Database/Bax087 |
0.42 |
|
| 2017 |
Cohen KB, Lanfranchi A, Choi MJ, Bada M, Baumgartner WA, Panteleyeva N, Verspoor K, Palmer M, Hunter LE. Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles. Bmc Bioinformatics. 18: 372. PMID 28818042 DOI: 10.1186/S12859-017-1775-9 |
0.322 |
|
| 2016 |
Bada M, Vasilevsky N, Haendel M, Hunter L. Updating and extending the concept annotations of the CRAFT corpus F1000research. 5. DOI: 10.7490/F1000Research.1111753.1 |
0.37 |
|
| 2015 |
Livingston KM, Bada M, Baumgartner WA, Hunter LE. KaBOB: ontology-based semantic integration of biomedical databases. Bmc Bioinformatics. 16: 126. PMID 25903923 DOI: 10.1186/S12859-015-0559-3 |
0.412 |
|
| 2014 |
Bada M. Mapping of biomedical text to concepts of lexicons, terminologies, and ontologies. Methods in Molecular Biology (Clifton, N.J.). 1159: 33-45. PMID 24788260 DOI: 10.1007/978-1-4939-0709-0_3 |
0.363 |
|
| 2014 |
Funk C, Baumgartner W, Garcia B, Roeder C, Bada M, Cohen KB, Hunter LE, Verspoor K. Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters. Bmc Bioinformatics. 15: 59. PMID 24571547 DOI: 10.1186/1471-2105-15-59 |
0.361 |
|
| 2013 |
Livingston KM, Bada M, Hunter LE, Verspoor K. Representing annotation compositionality and provenance for the Semantic Web. Journal of Biomedical Semantics. 4: 38. PMID 24268021 DOI: 10.1186/2041-1480-4-38 |
0.407 |
|
| 2013 |
Hill DP, Adams N, Bada M, Batchelor C, Berardini TZ, Dietze H, Drabkin HJ, Ennis M, Foulger RE, Harris MA, Hastings J, Kale NS, de Matos P, Mungall CJ, Owen G, et al. Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology. Bmc Genomics. 14: 513. PMID 23895341 DOI: 10.1186/1471-2164-14-513 |
0.331 |
|
| 2012 |
Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA, Bada M, Palmer M, Hunter LE. A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. Bmc Bioinformatics. 13: 207. PMID 22901054 DOI: 10.1186/1471-2105-13-207 |
0.35 |
|
| 2012 |
Bada M, Eckert M, Evans D, Garcia K, Shipley K, Sitnikov D, Baumgartner WA, Cohen KB, Verspoor K, Blake JA, Hunter LE. Concept annotation in the CRAFT corpus. Bmc Bioinformatics. 13: 161. PMID 22776079 DOI: 10.1186/1471-2105-13-161 |
0.314 |
|
| 2011 |
Bada M, Hunter L. Desiderata for ontologies to be used in semantic annotation of biomedical documents. Journal of Biomedical Informatics. 44: 94-101. PMID 20971216 DOI: 10.1016/J.Jbi.2010.10.002 |
0.433 |
|
| 2011 |
Mungall CJ, Bada M, Berardini TZ, Deegan J, Ireland A, Harris MA, Hill DP, Lomax J. Cross-product extensions of the Gene Ontology. Journal of Biomedical Informatics. 44: 80-6. PMID 20152934 DOI: 10.1016/J.Jbi.2010.02.002 |
0.372 |
|
| 2009 |
Bada M, Hunter L. Using the Gene Ontology to Annotate Biomedical Journal Articles Nature Precedings. 1-1. DOI: 10.1038/Npre.2009.3556.1 |
0.389 |
|
| 2007 |
Bada M, Hunter L. Enrichment of OBO ontologies. Journal of Biomedical Informatics. 40: 300-15. PMID 17011833 DOI: 10.1016/J.Jbi.2006.07.003 |
0.386 |
|
| 2004 |
Bada M, Stevens R, Goble C, Gil Y, Ashburner M, Blake JA, Cherry JM, Harris M, Lewis S. A short study on the success of the Gene Ontology Web Semantics. 1: 235-240. DOI: 10.1016/J.Websem.2003.12.003 |
0.381 |
|
| 2003 |
Gabashvili IS, Whirl-Carrillo M, Bada M, Banatao DR, Altman RB. Ribosomal dynamics inferred from variations in experimental measurements. Rna (New York, N.Y.). 9: 1301-7. PMID 14561879 DOI: 10.1261/Rna.5141503 |
0.454 |
|
| 2002 |
Whirl-Carrillo M, Gabashvili IS, Bada M, Banatao DR, Altman RB. Mining biochemical information: lessons taught by the ribosome. Rna (New York, N.Y.). 8: 279-89. PMID 12003488 DOI: 10.1017/S135583820202407X |
0.474 |
|
| 2000 |
Bada M, Walther D, Arcangioli B, Doniach S, Delarue M. Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein. Journal of Molecular Biology. 300: 563-74. PMID 10884352 DOI: 10.1006/Jmbi.2000.3854 |
0.312 |
|
| 2000 |
Bada MA, Altman RB. Computational modeling of structural experimental data. Methods in Enzymology. 317: 470-91. PMID 10829296 DOI: 10.1016/S0076-6879(00)17030-2 |
0.384 |
|
| 1999 |
Altman RB, Bada M, Chai XJ, Carillo MW, Chen RO, Abernethy NF. RiboWeb: an ontology-based system for collaborative molecular biology Ieee Intelligent Systems and Their Applications. 14: 68-76. DOI: 10.1109/5254.796092 |
0.446 |
|
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