Alan Medlar, PhD - Publications

Affiliations: 
University of Helsinki, Helsingfors, Finland 

10/28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Medlar AJ, Törönen P, Holm L. AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination. Nucleic Acids Research. PMID 29762724 DOI: 10.1093/nar/gky359  0.381
2018 Törönen P, Medlar A, Holm L. PANNZER2: a rapid functional annotation web server. Nucleic Acids Research. PMID 29741643 DOI: 10.1093/Nar/Gky350  0.398
2018 Aivelo T, Medlar A, Löytynoja A, Laakkonen J, Jernvall J. Metabarcoding Gastrointestinal Nematodes in Sympatric Endemic and Nonendemic Species in Ranomafana National Park, Madagascar International Journal of Primatology. 39: 49-64. DOI: 10.1007/s10764-017-0010-x  0.563
2017 Aivelo T, Medlar A. Opportunities and challenges in metabarcoding approaches for helminth community identification in wild mammals. Parasitology. 1-14. PMID 28534454 DOI: 10.1017/S0031182017000610  0.369
2017 Medlar A, Törönen P, Zosa E, Holm L. PANNZER 2: annotate a complete proteome in minutes! F1000research. 6. DOI: 10.7490/F1000Research.1114786.1  0.324
2016 Mishra PP, Medlar A, Holm L, Törönen P. Robust multi-group gene set analysis with few replicates. Bmc Bioinformatics. 17: 526. PMID 27938331 DOI: 10.1186/S12859-016-1403-0  0.33
2015 Veidenberg A, Medlar A, Löytynoja A. Wasabi: an integrated platform for evolutionary sequence analysis and data visualisation. Molecular Biology and Evolution. PMID 26635364 DOI: 10.1093/Molbev/Msv333  0.499
2015 Aivelo T, Medlar A, Löytynoja A, Laakkonen J, Jernvall J. Tracking year-to-year changes in intestinal nematode communities of rufous mouse lemurs (Microcebus rufus). Parasitology. 142: 1095-107. PMID 25892063 DOI: 10.1017/S0031182015000438  0.617
2015 Aivelo T, Medlar A, Löytynoja A, Laakkonen J, Jernvall J. Tracking year-to-year changes in intestinal nematode communities of rufous mouse lemurs (Microcebus rufus) Parasitology. 142: 1095-1107. DOI: 10.1017/S0031182015000438  0.574
2014 Medlar A, Aivelo T, Löytynoja A. Séance: reference-based phylogenetic analysis for 18S rRNA studies. Bmc Evolutionary Biology. 14: 235. PMID 25433763 DOI: 10.1186/S12862-014-0235-7  0.666
Low-probability matches (unlikely to be authored by this person)
2018 Medlar A, Holm L. TOPAZ: asymmetric suffix array neighbourhood search for massive protein databases. Bmc Bioinformatics. 19: 278. PMID 30064374 DOI: 10.1186/S12859-018-2290-3  0.279
2020 Medlar A, Glowacka D. "Exploratory search: user behaviour and search engine adaptation" by Alan Medlar and Dorota G?owacka with Martin Vesely as coordinator. Acm Sigweb Newsletter. 2019: 1-3. DOI: 10.1145/3352683.3352687  0.268
2017 Tekman M, Medlar A, Mozere M, Kleta R, Stanescu H. HaploForge: A Comprehensive Pedigree Drawing and Haplotype Visualisation Web Application. Bioinformatics (Oxford, England). PMID 28961780 DOI: 10.1093/Bioinformatics/Btx510  0.254
2013 Coenen MJ, Hofstra JM, Debiec H, Stanescu HC, Medlar AJ, Stengel B, Boland-Augé A, Groothuismink JM, Bockenhauer D, Powis SH, Mathieson PW, Brenchley PE, Kleta R, Wetzels JF, Ronco P. Phospholipase A2 receptor (PLA2R1) sequence variants in idiopathic membranous nephropathy. Journal of the American Society of Nephrology : Jasn. 24: 677-83. PMID 23431073 DOI: 10.1681/ASN.2012070730  0.218
2019 Zhou N, Jiang Y, Bergquist TR, Lee AJ, Kacsoh BZ, Crocker AW, Lewis KA, Georghiou G, Nguyen HN, Hamid MN, Davis L, Dogan T, Atalay V, Rifaioglu AS, Dalkıran A, ... ... Medlar AJ, et al. The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens. Genome Biology. 20: 244. PMID 31744546 DOI: 10.1186/S13059-019-1835-8  0.191
2020 Ojala T, Lindford A, Savijoki K, Lagus H, Tommila J, Medlar A, Kuusela P, Varmanen P, Holm L, Vuola J, Kankuri E, Kankainen M. Metatranscriptomic assessment of burn wound infection clearance. Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases. PMID 32712245 DOI: 10.1016/J.Cmi.2020.07.021  0.167
2013 Nibali L, Medlar A, Stanescu H, Kleta R, Darbar U, Donos N. Linkage analysis confirms heterogeneity of hereditary gingival fibromatosis Oral Diseases. 19: 100-105. PMID 22849749 DOI: 10.1111/j.1601-0825.2012.01965.x  0.142
1991 Kahle B, Medlar A. An information system for corporate users: Wide area information servers Online (Wilton, Connecticut). 15: 56-60.  0.139
2013 Medlar A, Głowacka D, Stanescu H, Bryson K, Kleta R. SwiftLink: Parallel MCMC linkage analysis using multicore CPU and GPU Bioinformatics. 29: 413-419. PMID 23239673 DOI: 10.1093/bioinformatics/bts704  0.127
2013 Hersheson J, Mencacci NE, Davis M, MacDonald N, Trabzuni D, Ryten M, Pittman A, Paudel R, Kara E, Fawcett K, Plagnol V, Bhatia KP, Medlar AJ, Stanescu HC, Hardy J, et al. Mutations in the autoregulatory domain of β-tubulin 4a cause hereditary dystonia. Annals of Neurology. 73: 546-53. PMID 23424103 DOI: 10.1002/Ana.23832  0.111
2010 Medlar A, Kleta R. Cystinosis and mickey mouse Nephrology Dialysis Transplantation. 25: 1032-1033. PMID 19959600 DOI: 10.1093/ndt/gfp648  0.069
2015 Athukorala K, Medlar A, Ilves K, Gtowacka D. Balancing exploration and exploitation: Empirical parameterization of exploratory search systems International Conference On Information and Knowledge Management, Proceedings. 19: 1703-1706. DOI: 10.1145/2806416.2806609  0.06
2020 Standing AS, Hong Y, Paisan-Ruiz C, Omoyinmi E, Medlar A, Stanescu H, Kleta R, Rowcenzio D, Hawkins P, Lachmann H, McDermott MF, Eleftheriou D, Klein N, Brogan PA. TRAP1 chaperone protein mutations and autoinflammation. Life Science Alliance. 3. PMID 31882397 DOI: 10.26508/lsa.201900376  0.049
2016 Standing AS, Malinova D, Hong Y, Record J, Moulding D, Blundell MP, Nowak K, Jones H, Omoyinmi E, Gilmour KC, Medlar A, Stanescu H, Kleta R, Anderson G, Nanthapisal S, et al. Autoinflammatory periodic fever, immunodeficiency, and thrombocytopenia (PFIT) caused by mutation in actin-regulatory gene WDR1. The Journal of Experimental Medicine. PMID 27994071 DOI: 10.1084/jem.20161228  0.035
2012 Jaureguiberry G, De la Dure-Molla M, Parry D, Quentric M, Himmerkus N, Koike T, Poulter J, Klootwijk E, Robinette SL, Howie AJ, Patel V, Figueres ML, Stanescu HC, Issler N, Nicholson JK, ... ... Medlar AJ, et al. Nephrocalcinosis (enamel renal syndrome) caused by autosomal recessive FAM20A mutations. Nephron. Physiology. 122: 1-6. PMID 23434854 DOI: 10.1159/000349989  0.022
2011 Stanescu HC, Arcos-Burgos M, Medlar A, Bockenhauer D, Kottgen A, Dragomirescu L, Voinescu C, Patel N, Pearce K, Hubank M, Stephens HA, Laundy V, Padmanabhan S, Zawadzka A, Hofstra JM, et al. Risk HLA-DQA1 and PLA(2)R1 alleles in idiopathic membranous nephropathy. The New England Journal of Medicine. 364: 616-26. PMID 21323541 DOI: 10.1056/NEJMoa1009742  0.014
2012 Bockenhauer D, Medlar AJ, Ashton E, Kleta R, Lench N. Genetic testing in renal disease Pediatric Nephrology. 27: 873-883. PMID 21617915 DOI: 10.1007/s00467-011-1865-2  0.01
2011 Głowacka D, Dorard L, Medlar A, Shawe-Taylor J. Prior knowledge in learning finite parameter spaces Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5591: 199-213. DOI: 10.1007/978-3-642-20169-1_13  0.01
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