| Year |
Citation |
Score |
| 2024 |
Wirthlin ME, Schmid TA, Elie JE, Zhang X, Kowalczyk A, Redlich R, Shvareva VA, Rakuljic A, Ji MB, Bhat NS, Kaplow IM, Schäffer DE, Lawler AJ, Wang AZ, Phan BN, ... ... Phan BN, et al. Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements. Science (New York, N.Y.). eabn3263. PMID 38422184 DOI: 10.1126/science.abn3263 |
0.709 |
|
| 2024 |
Phan BN, Ray MH, Xue X, Fu C, Fenster RJ, Kohut SJ, Bergman J, Haber SN, McCullough KM, Fish MK, Glausier JR, Su Q, Tipton AE, Lewis DA, Freyberg Z, et al. Single nuclei transcriptomics in human and non-human primate striatum in opioid use disorder. Nature Communications. 15: 878. PMID 38296993 DOI: 10.1038/s41467-024-45165-7 |
0.735 |
|
| 2023 |
Chen HY, Phan BN, Shim G, Hamersky GR, Sadowski N, O'Donnell TS, Sripathy SR, Bohlen JF, Pfenning AR, Maher BJ. Psychiatric risk gene Transcription Factor 4 (TCF4) regulates the density and connectivity of distinct inhibitory interneuron subtypes. Molecular Psychiatry. PMID 37770578 DOI: 10.1038/s41380-023-02248-z |
0.763 |
|
| 2023 |
Kaplow IM, Lawler AJ, Schäffer DE, Srinivasan C, Sestili HH, Wirthlin ME, Phan BN, Prasad K, Brown AR, Zhang X, Foley K, Genereux DP, Karlsson EK, Lindblad-Toh K, Meyer WK, ... ... Phan BN, et al. Relating enhancer genetic variation across mammals to complex phenotypes using machine learning. Science (New York, N.Y.). 380: eabm7993. PMID 37104615 DOI: 10.1126/science.abm7993 |
0.738 |
|
| 2023 |
Sullivan PF, Meadows JRS, Gazal S, Phan BN, Li X, Genereux DP, Dong MX, Bianchi M, Andrews G, Sakthikumar S, Nordin J, Roy A, Christmas MJ, Marinescu VD, Wang C, ... ... Phan BN, et al. Leveraging base-pair mammalian constraint to understand genetic variation and human disease. Science (New York, N.Y.). 380: eabn2937. PMID 37104612 DOI: 10.1126/science.abn2937 |
0.723 |
|
| 2023 |
Christmas MJ, Kaplow IM, Genereux DP, Dong MX, Hughes GM, Li X, Sullivan PF, Hindle AG, Andrews G, Armstrong JC, Bianchi M, Breit AM, Diekhans M, Fanter C, Foley NM, ... ... Phan BN, ... ... Phan BN, et al. Evolutionary constraint and innovation across hundreds of placental mammals. Science (New York, N.Y.). 380: eabn3943. PMID 37104599 DOI: 10.1126/science.abn3943 |
0.729 |
|
| 2023 |
Sullivan PF, Meadows JRS, Gazal S, Phan BN, Li X, Genereux DP, Dong MX, Bianchi M, Andrews G, Sakthikumar S, Nordin J, Roy A, Christmas MJ, Marinescu VD, Wallerman O, et al. Leveraging Base Pair Mammalian Constraint to Understand Genetic Variation and Human Disease. Biorxiv : the Preprint Server For Biology. PMID 36945512 DOI: 10.1101/2023.03.10.531987 |
0.67 |
|
| 2022 |
Lawler AJ, Ramamurthy E, Brown AR, Shin N, Kim Y, Toong N, Kaplow IM, Wirthlin M, Zhang X, Phan BN, Fox GA, Wade K, He J, Ozturk BE, Byrne LC, et al. Machine learning sequence prioritization for cell type-specific enhancer design. Elife. 11. PMID 35576146 DOI: 10.7554/eLife.69571 |
0.749 |
|
| 2022 |
Xue X, Zong W, Glausier JR, Kim SM, Shelton MA, Phan BN, Srinivasan C, Pfenning AR, Tseng GC, Lewis DA, Seney ML, Logan RW. Molecular rhythm alterations in prefrontal cortex and nucleus accumbens associated with opioid use disorder. Translational Psychiatry. 12: 123. PMID 35347109 DOI: 10.1038/s41398-022-01894-1 |
0.685 |
|
| 2022 |
Ramnauth AD, Maynard KR, Kardian AS, Phan BN, Tippani M, Rajpurohit S, Hobbs JW, Page SC, Jaffe AE, Martinowich K. Induction of Bdnf from promoter I following electroconvulsive seizures contributes to structural plasticity in neurons of the piriform cortex. Brain Stimulation. PMID 35183789 DOI: 10.1016/j.brs.2022.02.003 |
0.592 |
|
| 2021 |
Srinivasan C, Phan BN, Lawler AJ, Ramamurthy E, Kleyman M, Brown AR, Kaplow IM, Wirthlin ME, Pfenning AR. Addiction-associated genetic variants implicate brain cell type- and region-specific cis-regulatory elements in addiction neurobiology. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 34462306 DOI: 10.1523/JNEUROSCI.2534-20.2021 |
0.766 |
|
| 2021 |
Seney ML, Kim SM, Glausier JR, Hildebrand MA, Xue X, Zong W, Wang J, Shelton MA, Phan BN, Srinivasan C, Pfenning AR, Tseng GC, Lewis DA, Freyberg Z, Logan RW. Transcriptional Alterations in Dorsolateral Prefrontal Cortex and Nucleus Accumbens Implicate Neuroinflammation and Synaptic Remodeling in Opioid Use Disorder. Biological Psychiatry. PMID 34380600 DOI: 10.1016/j.biopsych.2021.06.007 |
0.68 |
|
| 2021 |
Eagles NJ, Burke EE, Leonard J, Barry BK, Stolz JM, Huuki L, Phan BN, Serrato VL, Gutiérrez-Millán E, Aguilar-Ordoñez I, Jaffe AE, Collado-Torres L. Correction to: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses. Bmc Bioinformatics. 22: 381. PMID 34294043 DOI: 10.1186/s12859-021-04283-5 |
0.513 |
|
| 2021 |
Eagles NJ, Burke EE, Leonard J, Barry BK, Stolz JM, Huuki L, Phan BN, Serrato VL, Gutiérrez-Millán E, Aguilar-Ordoñez I, Jaffe AE, Collado-Torres L. SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses. Bmc Bioinformatics. 22: 224. PMID 33932985 DOI: 10.1186/s12859-021-04142-3 |
0.563 |
|
| 2020 |
Maynard KR, Tippani M, Takahashi Y, Phan BN, Hyde TM, Jaffe AE, Martinowich K. dotdotdot: an automated approach to quantify multiplex single molecule fluorescent in situ hybridization (smFISH) images in complex tissues. Nucleic Acids Research. PMID 32383753 DOI: 10.1093/Nar/Gkaa312 |
0.641 |
|
| 2020 |
Phan BN, Bohlen JF, Davis BA, Ye Z, Chen HY, Mayfield B, Sripathy SR, Cerceo Page S, Campbell MN, Smith HL, Gallop D, Kim H, Thaxton CL, Simon JM, Burke EE, et al. A myelin-related transcriptomic profile is shared by Pitt-Hopkins syndrome models and human autism spectrum disorder. Nature Neuroscience. PMID 32015540 DOI: 10.1038/S41593-019-0578-X |
0.724 |
|
| 2020 |
Burke EE, Chenoweth JG, Shin JH, Collado-Torres L, Kim SK, Micali N, Wang Y, Colantuoni C, Straub RE, Hoeppner DJ, Chen HY, Sellers A, Shibbani K, Hamersky GR, Diaz Bustamante M, ... Phan BN, et al. Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs. Nature Communications. 11: 462. PMID 31974374 DOI: 10.1038/S41467-019-14266-Z |
0.735 |
|
| 2018 |
Maynard KR, Hobbs JW, Phan BN, Gupta A, Rajpurohit S, Williams C, Rajpurohit N, Shin JH, Jaffe AE, Martinowich K. BDNF-TrkB signaling in oxytocin neurons contributes to maternal behavior. Elife. 7. PMID 30192229 DOI: 10.7554/Elife.33676 |
0.632 |
|
| 2018 |
Maynard KR, Hobbs JW, Phan BN, Gupta A, Rajpurohit S, Williams C, Rajpurohit A, Shin JH, Jaffe AE, Martinowich K. Author response: BDNF-TrkB signaling in oxytocin neurons contributes to maternal behavior Elife. DOI: 10.7554/Elife.33676.023 |
0.591 |
|
| 2017 |
Page SC, Hamersky GR, Gallo RA, Rannals MD, Calcaterra NE, Campbell MN, Mayfield B, Briley A, Phan BN, Jaffe AE, Maher BJ. The schizophrenia- and autism-associated gene, transcription factor 4 regulates the columnar distribution of layer 2/3 prefrontal pyramidal neurons in an activity-dependent manner. Molecular Psychiatry. PMID 28289282 DOI: 10.1038/Mp.2017.37 |
0.748 |
|
| 2016 |
Rannals MD, Hamersky GR, Page SC, Campbell MN, Briley A, Gallo RA, Phan BN, Hyde TM, Kleinman JE, Shin JH, Jaffe AE, Weinberger DR, Maher BJ. Psychiatric Risk Gene Transcription Factor 4 Regulates Intrinsic Excitability of Prefrontal Neurons via Repression of SCN10a and KCNQ1. Neuron. PMID 26971948 DOI: 10.1016/j.neuron.2016.02.021 |
0.741 |
|
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