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Arpita Upadhyaya, Ph.D. - Publications

Affiliations: 
University of Notre Dame, Notre Dame, IN, United States 
 Physics University of Maryland, College Park, College Park, MD 
Area:
Biophysics
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51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Bhanja A, Seeley-Fallen MK, Lazzaro M, Upadhyaya A, Song W. N-WASP-dependent branched actin polymerization attenuates B-cell receptor signaling by increasing the molecular density of receptor clusters. Elife. 12. PMID 38085658 DOI: 10.7554/eLife.87833  0.464
2023 Bhanja A, Lazzaro M, Upadhyaya A, Song W. N-WASP-dependent branched actin polymerization attenuates B-cell receptor signaling by increasing the molecular density of receptor clusters. Biorxiv : the Preprint Server For Biology. PMID 36993351 DOI: 10.1101/2023.03.14.532631  0.464
2022 Ni Q, Wagh K, Pathni A, Ni H, Vashisht V, Upadhyaya A, Papoian GA. A tug of war between filament treadmilling and myosin induced contractility generates actin rings. Elife. 11. PMID 36269229 DOI: 10.7554/eLife.82658  0.363
2022 Wheatley BA, Rey-Suarez I, Hourwitz MJ, Kerr S, Shroff H, Fourkas JT, Upadhyaya A. Nanotopography modulates cytoskeletal organization and dynamics during T cell activation. Molecular Biology of the Cell. mbcE21120601. PMID 35830602 DOI: 10.1091/mbc.E21-12-0601  0.37
2022 Seeley-Fallen MK, Lazzaro M, Liu C, Li QZ, Upadhyaya A, Song W. Non-Muscle Myosin II Is Essential for the Negative Regulation of B-Cell Receptor Signaling and B-Cell Activation. Frontiers in Immunology. 13: 842605. PMID 35493485 DOI: 10.3389/fimmu.2022.842605  0.377
2022 Pathni A, Özçelikkale A, Rey-Suarez I, Li L, Davis S, Rogers N, Xiao Z, Upadhyaya A. Cytotoxic T Lymphocyte Activation Signals Modulate Cytoskeletal Dynamics and Mechanical Force Generation. Frontiers in Immunology. 13: 779888. PMID 35371019 DOI: 10.3389/fimmu.2022.779888  0.344
2021 Li Y, Bhanja A, Upadhyaya A, Zhao X, Song W. WASp Is Crucial for the Unique Architecture of the Immunological Synapse in Germinal Center B-Cells. Frontiers in Cell and Developmental Biology. 9: 646077. PMID 34195186 DOI: 10.3389/fcell.2021.646077  0.477
2021 Bhanja A, Rey-Suarez I, Song W, Upadhyaya A. Bidirectional feedback between BCR signaling and actin cytoskeletal dynamics. The Febs Journal. PMID 34124846 DOI: 10.1111/febs.16074  0.405
2021 Rey-Suarez I, Rogers N, Kerr S, Shroff H, Upadhyaya A. Actomyosin dynamics modulate microtubule deformation and growth during T cell activation. Molecular Biology of the Cell. mbcE20100685. PMID 33826369 DOI: 10.1091/mbc.E20-10-0685  0.376
2020 Wagh K, Wheatley BA, Traver MK, Hussain I, Schaefer BC, Upadhyaya A. Bcl10 is associated with actin dynamics at the T cell immune synapse. Cellular Immunology. 356: 104161. PMID 32768663 DOI: 10.1016/J.Cellimm.2020.104161  0.478
2020 Rey-Suarez I, Wheatley BA, Koo P, Bhanja A, Shu Z, Mochrie S, Song W, Shroff H, Upadhyaya A. WASP family proteins regulate the mobility of the B cell receptor during signaling activation. Nature Communications. 11: 439. PMID 31974357 DOI: 10.1038/S41467-020-14335-8  0.431
2019 Chandrasekaran A, Upadhyaya A, Papoian GA. Remarkable structural transformations of actin bundles are driven by their initial polarity, motor activity, crosslinking, and filament treadmilling. Plos Computational Biology. 15: e1007156. PMID 31287817 DOI: 10.1371/Journal.Pcbi.1007156  0.477
2018 Ketchum CM, Sun X, Suberi A, Fourkas JT, Song W, Upadhyaya A. Subcellular topography modulates actin dynamics and signaling in B cells. Molecular Biology of the Cell. mbcE17060422. PMID 29771636 DOI: 10.1091/Mbc.E17-06-0422  0.537
2018 Rey I, Garcia DA, Wheatley BA, Song W, Upadhyaya A. Biophysical Techniques to Study B Cell Activation: Single-Molecule Imaging and Force Measurements. Methods in Molecular Biology (Clifton, N.J.). 1707: 51-68. PMID 29388099 DOI: 10.1007/978-1-4939-7474-0_4  0.511
2017 Upadhyaya A. Mechanosensing in the immune response. Seminars in Cell & Developmental Biology. PMID 28830744 DOI: 10.1016/J.Semcdb.2017.08.031  0.473
2017 Azatov M, Sun X, Suberi A, Fourkas JT, Upadhyaya A. Topography on a subcellular scale modulates cellular adhesions and actin stress fiber dynamics in tumor associated fibroblasts. Physical Biology. PMID 28635615 DOI: 10.1088/1478-3975/Aa7Acc  0.446
2017 Hui KL, Upadhyaya A. Dynamic microtubules regulate cellular contractility during T-cell activation. Proceedings of the National Academy of Sciences of the United States of America. PMID 28490501 DOI: 10.1073/Pnas.1614291114  0.483
2016 Azatov M, Goicoechea SM, Otey CA, Upadhyaya A. The actin crosslinking protein palladin modulates force generation and mechanosensitivity of tumor associated fibroblasts. Scientific Reports. 6: 28805. PMID 27353427 DOI: 10.1038/Srep28805  0.517
2015 Hui KL, Balagopalan L, Samelson LE, Upadhyaya A. Cytoskeletal forces during signaling activation in Jurkat T-cells. Molecular Biology of the Cell. 26: 685-95. PMID 25518938 DOI: 10.1091/Mbc.E14-03-0830  0.469
2015 Lam Hui K, Upadhyaya A. Cytoskeletal Forces during T Cell Activation Biophysical Journal. 108: 142a. DOI: 10.1016/J.Bpj.2014.11.785  0.485
2015 Ketchum CM, Sun X, Miller H, Fourkas J, Song W, Upadhyaya A. Actin Dynamics and Signaling Activation of B Lymphocytes Respond to Substrate Topography Biophysical Journal. 108: 455a. DOI: 10.1016/J.Bpj.2014.11.2482  0.536
2015 Azatov M, Sun X, Fourkas J, Otey C, Upadhyaya A. Human Tumor-Associated Fibroblasts can Sense the Topography of their Environment Biophysical Journal. 108: 300a. DOI: 10.1016/J.Bpj.2014.11.1633  0.488
2014 Seeley-Fallen MK, Liu LJ, Shapiro MR, Onabajo OO, Palaniyandi S, Zhu X, Tan TH, Upadhyaya A, Song W. Actin-binding protein 1 links B-cell antigen receptors to negative signaling pathways. Proceedings of the National Academy of Sciences of the United States of America. 111: 9881-6. PMID 24958882 DOI: 10.1073/Pnas.1321971111  0.496
2014 Ketchum C, Miller H, Song W, Upadhyaya A. Ligand mobility regulates B cell receptor clustering and signaling activation. Biophysical Journal. 106: 26-36. PMID 24411234 DOI: 10.1016/J.Bpj.2013.10.043  0.457
2014 Lam Hui K, Kwak SI, Upadhyaya A. Adhesion-dependent modulation of actin dynamics in Jurkat T cells. Cytoskeleton (Hoboken, N.J.). 71: 119-35. PMID 24382832 DOI: 10.1002/Cm.21156  0.541
2014 Song W, Liu C, Upadhyaya A. The pivotal position of the actin cytoskeleton in the initiation and regulation of B cell receptor activation. Biochimica Et Biophysica Acta. 1838: 569-78. PMID 23886914 DOI: 10.1016/J.Bbamem.2013.07.016  0.56
2014 Azatov M, Goicoechea S, Otey C, Hwang R, Upadhyaya A. The Actin Crosslinking Protein Palladin Modulates Force Generation and Mechanical Sensing of Tumor Associated Fibroblasts Biophysical Journal. 106: 786a. DOI: 10.1016/J.Bpj.2013.11.4307  0.53
2014 Ketchum CM, Miller H, Song W, Sun X, Fourkas J, Upadhyaya A. B Cell Receptor Clustering and Signaling Activation are Modulated by Physical Parameters of the Surface Biophysical Journal. 106: 785a-786a. DOI: 10.1016/J.Bpj.2013.11.4306  0.507
2014 Upadhyaya A. Forcing it On: Actin Dynamics During Lymphocyte Activation Biophysical Journal. 106: 235a. DOI: 10.1016/J.Bpj.2013.11.1379  0.518
2013 Liu C, Fallen MK, Miller H, Upadhyaya A, Song W. The actin cytoskeleton coordinates the signal transduction and antigen processing functions of the B cell antigen receptor. Frontiers in Biology. 8: 475-485. PMID 24999354 DOI: 10.1007/S11515-013-1272-0  0.476
2013 Liu C, Bai X, Wu J, Sharma S, Upadhyaya A, Dahlberg CI, Westerberg LS, Snapper SB, Zhao X, Song W. N-wasp is essential for the negative regulation of B cell receptor signaling. Plos Biology. 11: e1001704. PMID 24223520 DOI: 10.1371/Journal.Pbio.1001704  0.471
2013 Song W, Liu C, Seeley-Fallen MK, Miller H, Ketchum C, Upadhyaya A. Actin-mediated feedback loops in B-cell receptor signaling. Immunological Reviews. 256: 177-89. PMID 24117821 DOI: 10.1111/Imr.12113  0.516
2012 Liu C, Miller H, Sharma S, Beaven A, Upadhyaya A, Song W. Analyzing actin dynamics during the activation of the B cell receptor in live B cells. Biochemical and Biophysical Research Communications. 427: 202-6. PMID 22995298 DOI: 10.1016/J.Bbrc.2012.09.046  0.507
2012 Grooman B, Fujiwara I, Otey C, Upadhyaya A. Morphology and viscoelasticity of actin networks formed with the mutually interacting crosslinkers: palladin and alpha-actinin. Plos One. 7: e42773. PMID 22916157 DOI: 10.1371/Journal.Pone.0042773  0.729
2012 Lam Hui K, Wang C, Grooman B, Wayt J, Upadhyaya A. Membrane dynamics correlate with formation of signaling clusters during cell spreading. Biophysical Journal. 102: 1524-33. PMID 22500752 DOI: 10.1016/J.Bpj.2012.02.015  0.743
2012 Liu C, Miller H, Orlowski G, Hang H, Upadhyaya A, Song W. Actin reorganization is required for the formation of polarized B cell receptor signalosomes in response to both soluble and membrane-associated antigens. Journal of Immunology (Baltimore, Md. : 1950). 188: 3237-46. PMID 22387556 DOI: 10.4049/Jimmunol.1103065  0.506
2011 Liu C, Miller H, Hui KL, Grooman B, Bolland S, Upadhyaya A, Song W. A balance of Bruton's tyrosine kinase and SHIP activation regulates B cell receptor cluster formation by controlling actin remodeling. Journal of Immunology (Baltimore, Md. : 1950). 187: 230-9. PMID 21622861 DOI: 10.4049/Jimmunol.1100157  0.736
2011 Grooman B, Fujiwara I, Otey C, Upadhyaya A. Structure and Mechanical Properties of Actin Networks Crosslinked with Mutually Interacting Crosslinkers Biophysical Journal. 100: 595a. DOI: 10.1016/J.Bpj.2010.12.3428  0.729
2011 Ketchum C, Liu C, Song W, Upadhyaya A. Spreading Dynamics and Oscillatory Membrane Behavior of B Lymphocytes Biophysical Journal. 100: 306a. DOI: 10.1016/J.Bpj.2010.12.1872  0.543
2011 Hui KL, Grooman B, Wang CL, Upadhyaya A. Actin Dynamics and Membrane Topography During T Lymphocyte Spreading Biophysical Journal. 100: 306a. DOI: 10.1016/J.Bpj.2010.12.1871  0.754
2008 Upadhyaya A, Baraban M, Wong J, Matsudaira P, van Oudenaarden A, Mahadevan L. Power-limited contraction dynamics of Vorticella convallaria: an ultrafast biological spring. Biophysical Journal. 94: 265-72. PMID 17933875 DOI: 10.1529/Biophysj.107.108852  0.372
2006 Tharp WG, Yadav R, Irimia D, Upadhyaya A, Samadani A, Hurtado O, Liu SY, Munisamy S, Brainard DM, Mahon MJ, Nourshargh S, van Oudenaarden A, Toner MG, Poznansky MC. Neutrophil chemorepulsion in defined interleukin-8 gradients in vitro and in vivo. Journal of Leukocyte Biology. 79: 539-54. PMID 16365152 DOI: 10.1189/Jlb.0905516  0.329
2004 Upadhyaya A, van Oudenaarden A. Actin polymerization: forcing flat faces forward. Current Biology : Cb. 14: R467-9. PMID 15203017 DOI: 10.1016/J.Cub.2004.06.010  0.407
2004 Upadhyaya A, Sheetz MP. Tension in tubulovesicular networks of Golgi and endoplasmic reticulum membranes. Biophysical Journal. 86: 2923-8. PMID 15111408 DOI: 10.1016/S0006-3495(04)74343-X  0.379
2004 Nguyen B, Upadhyaya A, Van Oudenaarden A, Brenner MP. Elastic Instability in Growing Yeast Colonies Biophysical Journal. 86: 2740-2747. PMID 15111392 DOI: 10.1016/S0006-3495(04)74327-1  0.4
2003 Upadhyaya A, van Oudenaarden A. Biomimetic systems for studying actin-based motility. Current Biology : Cb. 13: R734-44. PMID 13678615 DOI: 10.1016/J.Cub.2003.08.051  0.493
2003 Upadhyaya A, Chabot JR, Andreeva A, Samadani A, van Oudenaarden A. Probing polymerization forces by using actin-propelled lipid vesicles. Proceedings of the National Academy of Sciences of the United States of America. 100: 4521-6. PMID 12657740 DOI: 10.1073/Pnas.0837027100  0.436
2003 Ouchi NB, Glazier JA, Rieu JP, Upadhyaya A, Sawada Y. Improving the realism of the cellular Potts model in simulations of biological cells Physica a: Statistical Mechanics and Its Applications. 329: 451-458. DOI: 10.1016/S0378-4371(03)00574-0  0.622
2001 Mombach JCM, De Almeida RMC, Thomas GL, Upadhyaya A, Glazier JA. Bursts and cavity formation in Hydra cells aggregates: Experiments and simulations Physica a: Statistical Mechanics and Its Applications. 297: 495-508. DOI: 10.1016/S0378-4371(01)00199-6  0.622
2001 Upadhyaya A, Rieu JP, Glazier JA, Sawada Y. Anomalous diffusion and non-Gaussian velocity distribution of Hydra cells in cellular aggregates Physica a: Statistical Mechanics and Its Applications. 293: 549-558. DOI: 10.1016/S0378-4371(01)00009-7  0.553
2000 Rieu JP, Upadhyaya A, Glazier JA, Ouchi NB, Sawada Y. Diffusion and deformations of single hydra cells in cellular aggregates. Biophysical Journal. 79: 1903-14. PMID 11023896 DOI: 10.1016/S0006-3495(00)76440-X  0.626
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