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David B. Gordon, Ph.D. - Publications

Affiliations: 
2000 California Institute of Technology, Pasadena, CA 
Area:
Structural Biology
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11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chang FY, Siuti P, Laurent S, Williams T, Glassey E, Sailer AW, Gordon DB, Hemmerle H, Voigt CA. Publisher Correction: Gut-inhabiting Clostridia build human GPCR ligands by conjugating neurotransmitters with diet- and human-derived fatty acids. Nature Microbiology. PMID 33888882 DOI: 10.1038/s41564-021-00910-2  0.41
2021 Chang FY, Siuti P, Laurent S, Williams T, Glassey E, Sailer AW, Gordon DB, Hemmerle H, Voigt CA. Gut-inhabiting Clostridia build human GPCR ligands by conjugating neurotransmitters with diet- and human-derived fatty acids. Nature Microbiology. PMID 33846627 DOI: 10.1038/s41564-021-00887-y  0.432
2016 Roehner N, Young E, Voigt CA, Gordon DB, Densmore D. Double Dutch: A Tool for Designing Combinatorial Libraries of Biological Systems. Acs Synthetic Biology. PMID 27110633 DOI: 10.1021/Acssynbio.5B00232  0.535
2014 Smanski MJ, Bhatia S, Zhao D, Park Y, B A Woodruff L, Giannoukos G, Ciulla D, Busby M, Calderon J, Nicol R, Gordon DB, Densmore D, Voigt CA. Functional optimization of gene clusters by combinatorial design and assembly. Nature Biotechnology. 32: 1241-9. PMID 25419741 DOI: 10.1038/Nbt.3063  0.464
2014 Woodruff LBA, Mikkelsen T, Smanski MJ, Gordon DB, Voigt CA, Nicol R. Scalable, accurate, and systematic engineering of synthetic pathways: Massively multiplexed DNA assembly, next-gen sequence verification, and model-guided design Systems Biology 2014 - Topical Conference At the 2014 Aiche Annual Meeting. 2.  0.494
2003 Gordon DB, Hom GK, Mayo SL, Pierce NA. Exact rotamer optimization for protein design. Journal of Computational Chemistry. 24: 232-43. PMID 12497602 DOI: 10.1002/Jcc.10121  0.684
2000 Street AG, Datta D, Gordon DB, Mayo SL. Designing protein beta-sheet surfaces by Z-score optimization. Physical Review Letters. 84: 5010-3. PMID 10990854 DOI: 10.1103/Physrevlett.84.5010  0.676
2000 Voigt CA, Gordon DB, Mayo SL. Trading accuracy for speed: A quantitative comparison of search algorithms in protein sequence design. Journal of Molecular Biology. 299: 789-803. PMID 10835284 DOI: 10.1006/Jmbi.2000.3758  0.67
1999 Gordon DB, Mayo SL. Branch-and-terminate: a combinatorial optimization algorithm for protein design. Structure (London, England : 1993). 7: 1089-98. PMID 10508778 DOI: 10.1016/S0969-2126(99)80176-2  0.577
1999 Gordon DB, Marshall SA, Mayo SL. Energy functions for protein design. Current Opinion in Structural Biology. 9: 509-13. PMID 10449371 DOI: 10.1016/S0959-440X(99)80072-4  0.691
1997 Dahiyat BI, Gordon DB, Mayo SL. Automated design of the surface positions of protein helices. Protein Science : a Publication of the Protein Society. 6: 1333-7. PMID 9194194 DOI: 10.1002/Pro.5560060622  0.579
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