| Year |
Citation |
Score |
| 2024 |
Mirarab S, Rivas-González I, Feng S, Stiller J, Fang Q, Mai U, Hickey G, Chen G, Brajuka N, Fedrigo O, Formenti G, Wolf JBW, Howe K, Antunes A, Schierup MH, et al. A region of suppressed recombination misleads neoavian phylogenomics. Proceedings of the National Academy of Sciences of the United States of America. 121: e2319506121. PMID 38557186 DOI: 10.1073/pnas.2319506121 |
0.343 |
|
| 2024 |
Bukhman YV, Morin PA, Meyer S, Chu LF, Jacobsen JK, Antosiewicz-Bourget J, Mamott D, Gonzales M, Argus C, Bolin J, Berres ME, Fedrigo O, Steill J, Swanson SA, Jiang P, et al. A high-quality blue whale genome, segmental duplications, and historical demography. Molecular Biology and Evolution. PMID 38376487 DOI: 10.1093/molbev/msae036 |
0.324 |
|
| 2023 |
Lee YH, Abueg L, Kim JK, Kim YW, Fedrigo O, Balacco J, Formenti G, Howe K, Tracey A, Wood J, Thibaud-Nissen F, Nam BH, No ES, Kim HR, Lee C, et al. Chromosome-level genome assembly of chub mackerel (Scomber japonicus) from the Indo-Pacific Ocean. Scientific Data. 10: 880. PMID 38066002 DOI: 10.1038/s41597-023-02782-z |
0.323 |
|
| 2023 |
Bond DM, Ortega-Recalde O, Laird MK, Hayakawa T, Richardson KS, Reese FCB, Kyle B, McIsaac-Williams BE, Robertson BC, van Heezik Y, Adams AL, Chang WS, Haase B, Mountcastle J, Driller M, ... ... Fedrigo O, et al. The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genes. Nature Communications. 14: 6364. PMID 37848431 DOI: 10.1038/s41467-023-41784-8 |
0.361 |
|
| 2023 |
Skorupski J, Brandes F, Seebass C, Festl W, Śmietana P, Balacco J, Jain N, Tilley T, Abueg L, Wood J, Sims Y, Formenti G, Fedrigo O, Jarvis ED. Prioritizing Endangered Species in Genome Sequencing: Conservation Genomics in Action with the First Platinum-Standard Reference-Quality Genome of the Critically Endangered European Mink L., 1761. International Journal of Molecular Sciences. 24. PMID 37834264 DOI: 10.3390/ijms241914816 |
0.328 |
|
| 2023 |
Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ, Buonaiuto S, Chang XH, Cheng H, Chu J, Colonna V, ... ... Fedrigo O, et al. A draft human pangenome reference. Nature. 617: 312-324. PMID 37165242 DOI: 10.1038/s41586-023-05896-x |
0.314 |
|
| 2023 |
Timoshevskaya N, Eşkut KI, Timoshevskiy VA, Robb SMC, Holt C, Hess JE, Parker HJ, Baker CF, Miller AK, Saraceno C, Yandell M, Krumlauf R, Narum SR, Lampman RT, Gemmell NJ, ... ... Fedrigo O, et al. An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes. Cell Reports. 42: 112263. PMID 36930644 DOI: 10.1016/j.celrep.2023.112263 |
0.37 |
|
| 2023 |
Bentley BP, Carrasco-Valenzuela T, Ramos EKS, Pawar H, Souza Arantes L, Alexander A, Banerjee SM, Masterson P, Kuhlwilm M, Pippel M, Mountcastle J, Haase B, Uliano-Silva M, Formenti G, Howe K, ... ... Fedrigo O, et al. Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. Proceedings of the National Academy of Sciences of the United States of America. 120: e2201076120. PMID 36749728 DOI: 10.1073/pnas.2201076120 |
0.361 |
|
| 2023 |
Secomandi S, Gallo GR, Sozzoni M, Iannucci A, Galati E, Abueg L, Balacco J, Caprioli M, Chow W, Ciofi C, Collins J, Fedrigo O, Ferretti L, Fungtammasan A, Haase B, et al. A chromosome-level reference genome and pangenome for barn swallow population genomics. Cell Reports. 42: 111992. PMID 36662619 DOI: 10.1016/j.celrep.2023.111992 |
0.312 |
|
| 2022 |
Jarvis ED, Formenti G, Rhie A, Guarracino A, Yang C, Wood J, Tracey A, Thibaud-Nissen F, Vollger MR, Porubsky D, Cheng H, Asri M, Logsdon GA, Carnevali P, Chaisson MJP, ... ... Fedrigo O, et al. Semi-automated assembly of high-quality diploid human reference genomes. Nature. PMID 36261518 DOI: 10.1038/s41586-022-05325-5 |
0.322 |
|
| 2022 |
Hardwick SA, Hu W, Joglekar A, Fan L, Collier PG, Foord C, Balacco J, Lanjewar S, Sampson MM, Koopmans F, Prjibelski AD, Mikheenko A, Belchikov N, Jarroux J, Lucas AB, ... ... Fedrigo O, et al. Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue. Nature Biotechnology. PMID 35256815 DOI: 10.1038/s41587-022-01231-3 |
0.304 |
|
| 2022 |
Sahajpal NS, Jill Lai CY, Hastie A, Mondal AK, Dehkordi SR, van der Made CI, Fedrigo O, Al-Ajli F, Jalnapurkar S, Byrska-Bishop M, Kanagal-Shamanna R, Levy B, Schieck M, Illig T, Bacanu SA, et al. Optical genome mapping identifies rare structural variations as predisposition factors associated with severe COVID-19. Iscience. 103760. PMID 35036860 DOI: 10.1016/j.isci.2022.103760 |
0.303 |
|
| 2021 |
Hansen T, Fjelldal PG, Lien S, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Fedrigo O, Mountcastle J, Jarvis E, McCarthy SA, Chow W, Howe K, et al. The genome sequence of the brown trout, Linnaeus 1758. Wellcome Open Research. 6: 108. PMID 34632087 DOI: 10.12688/wellcomeopenres.16838.1 |
0.377 |
|
| 2021 |
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0 |
0.369 |
|
| 2021 |
Formenti G, Rhie A, Balacco J, Haase B, Mountcastle J, Fedrigo O, Brown S, Capodiferro MR, Al-Ajli FO, Ambrosini R, Houde P, Koren S, Oliver K, Smith M, Skelton J, et al. Complete vertebrate mitogenomes reveal widespread repeats and gene duplications. Genome Biology. 22: 120. PMID 33910595 DOI: 10.1186/s13059-021-02336-9 |
0.318 |
|
| 2021 |
Yang C, Zhou Y, Marcus S, Formenti G, Bergeron LA, Song Z, Bi X, Bergman J, Rousselle MMC, Zhou C, Zhou L, Deng Y, Fang M, Xie D, Zhu Y, ... ... Fedrigo O, et al. Evolutionary and biomedical insights from a marmoset diploid genome assembly. Nature. PMID 33910227 DOI: 10.1038/s41586-021-03535-x |
0.393 |
|
| 2021 |
Zhou Y, Shearwin-Whyatt L, Li J, Song Z, Hayakawa T, Stevens D, Fenelon JC, Peel E, Cheng Y, Pajpach F, Bradley N, Suzuki H, Nikaido M, Damas J, Daish T, ... ... Fedrigo O, et al. Platypus and echidna genomes reveal mammalian biology and evolution. Nature. PMID 33408411 DOI: 10.1038/s41586-020-03039-0 |
0.347 |
|
| 2020 |
Jebb D, Huang Z, Pippel M, Hughes GM, Lavrichenko K, Devanna P, Winkler S, Jermiin LS, Skirmuntt EC, Katzourakis A, Burkitt-Gray L, Ray DA, Sullivan KAM, Roscito JG, Kirilenko BM, ... ... Fedrigo O, et al. Six reference-quality genomes reveal evolution of bat adaptations. Nature. 583: 578-584. PMID 32699395 DOI: 10.1038/S41586-020-2486-3 |
0.49 |
|
| 2020 |
Ray TA, Cochran K, Kozlowski C, Wang J, Alexander G, Cady MA, Spencer WJ, Ruzycki PA, Clark BS, Laeremans A, He MX, Wang X, Park E, Hao Y, Iannaccone A, ... ... Fedrigo O, et al. Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease. Nature Communications. 11: 3328. PMID 32620864 DOI: 10.1038/S41467-020-17009-7 |
0.336 |
|
| 2020 |
da Fonseca RR, Couto A, Machado AM, Brejova B, Albertin CB, Silva F, Gardner P, Baril T, Hayward A, Campos A, Ribeiro ÂM, Barrio-Hernandez I, Hoving HJ, Tafur-Jimenez R, Chu C, ... ... Fedrigo O, et al. A draft genome sequence of the elusive giant squid, Architeuthis dux. Gigascience. 9. PMID 31942620 DOI: 10.1093/Gigascience/Giz152 |
0.419 |
|
| 2020 |
Morin PA, Alexander A, Blaxter M, Caballero S, Fedrigo O, Fontaine MC, Foote AD, Kuraku S, Maloney B, McCarthy ML, McGowen MR, Mountcastle J, Nery MF, Olsen MT, Rosel PE, et al. Building genomic infrastructure: Sequencing platinum‐standard reference‐quality genomes of all cetacean species Marine Mammal Science. DOI: 10.1111/Mms.12721 |
0.43 |
|
| 2019 |
Jung KM, Kim YM, Keyte AL, Biegler MT, Rengaraj D, Lee HJ, Mello CV, Velho TAF, Fedrigo O, Haase B, Jarvis ED, Han JY. Identification and characterization of primordial germ cells in a vocal learning Neoaves species, the zebra finch. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. fj201900760RR. PMID 31604057 DOI: 10.1096/Fj.201900760Rr |
0.307 |
|
| 2014 |
Ganapathy G, Howard JT, Ward JM, Li J, Li B, Li Y, Xiong Y, Zhang Y, Zhou S, Schwartz DC, Schatz M, Aboukhalil R, Fedrigo O, Bukovnik L, Wang T, et al. High-coverage sequencing and annotated assemblies of the budgerigar genome. Gigascience. 3: 11. PMID 25061512 DOI: 10.1186/2047-217X-3-11 |
0.396 |
|
| 2014 |
Horvath JE, Ramachandran GL, Fedrigo O, Nielsen WJ, Babbitt CC, St Clair EM, Pfefferle LW, Jernvall J, Wray GA, Wall CE. Genetic comparisons yield insight into the evolution of enamel thickness during human evolution. Journal of Human Evolution. 73: 75-87. PMID 24810709 DOI: 10.1016/J.Jhevol.2014.01.005 |
0.433 |
|
| 2014 |
Guo X, Zheng S, Dang H, Pace RG, Stonebraker JR, Jones CD, Boellmann F, Yuan G, Haridass P, Fedrigo O, Corcoran DL, Seibold MA, Ranade SS, Knowles MR, O'Neal WK, et al. Genome reference and sequence variation in the large repetitive central exon of human MUC5AC. American Journal of Respiratory Cell and Molecular Biology. 50: 223-32. PMID 24010879 DOI: 10.1165/Rcmb.2013-0235Oc |
0.503 |
|
| 2013 |
Ousterout DG, Perez-Pinera P, Thakore PI, Kabadi AM, Brown MT, Qin X, Fedrigo O, Mouly V, Tremblay JP, Gersbach CA. Erratum: Reading Frame correction by targeted genome editing restores dystrophin expression in cells from duchenne muscular dystrophy patients (Molecular Therapy (2013) 21 (1718-1726) DOI: 10.1038/mt.2013.111) Molecular Therapy. 21. PMID 28147288 DOI: 10.1038/Mt.2013.229 |
0.324 |
|
| 2013 |
Ousterout DG, Perez-Pinera P, Thakore PI, Kabadi AM, Brown MT, Qin X, Fedrigo O, Mouly V, Tremblay JP, Gersbach CA. Reading frame correction by targeted genome editing restores dystrophin expression in cells from Duchenne muscular dystrophy patients. Molecular Therapy : the Journal of the American Society of Gene Therapy. 21: 1718-26. PMID 23732986 DOI: 10.1038/Mt.2013.111 |
0.441 |
|
| 2012 |
Shibata Y, Sheffield NC, Fedrigo O, Babbitt CC, Wortham M, Tewari AK, London D, Song L, Lee BK, Iyer VR, Parker SC, Margulies EH, Wray GA, Furey TS, Crawford GE. Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection. Plos Genetics. 8: e1002789. PMID 22761590 DOI: 10.1371/Journal.Pgen.1002789 |
0.452 |
|
| 2011 |
Fedrigo O, Pfefferle AD, Babbitt CC, Haygood R, Wall CE, Wray GA. A potential role for glucose transporters in the evolution of human brain size. Brain, Behavior and Evolution. 78: 315-26. PMID 21986508 DOI: 10.1159/000329852 |
0.342 |
|
| 2011 |
Babbitt CC, Warner LR, Fedrigo O, Wall CE, Wray GA. Genomic signatures of diet-related shifts during human origins. Proceedings. Biological Sciences / the Royal Society. 278: 961-9. PMID 21177690 DOI: 10.1098/Rspb.2010.2433 |
0.397 |
|
| 2010 |
Cruz-Gordillo P, Fedrigo O, Wray GA, Babbitt CC. Extensive changes in the expression of the opioid genes between humans and chimpanzees. Brain, Behavior and Evolution. 76: 154-62. PMID 21079395 DOI: 10.1159/000320968 |
0.434 |
|
| 2010 |
Fedrigo O, Warner LR, Pfefferle AD, Babbitt CC, Cruz-Gordillo P, Wray GA. A pipeline to determine RT-QPCR control genes for evolutionary studies: application to primate gene expression across multiple tissues. Plos One. 5. PMID 20824057 DOI: 10.1371/Journal.Pone.0012545 |
0.407 |
|
| 2010 |
Haygood R, Babbitt CC, Fedrigo O, Wray GA. Contrasts between adaptive coding and noncoding changes during human evolution. Proceedings of the National Academy of Sciences of the United States of America. 107: 7853-7. PMID 20385805 DOI: 10.1073/Pnas.0911249107 |
0.454 |
|
| 2010 |
Babbitt CC, Fedrigo O, Pfefferle AD, Boyle AP, Horvath JE, Furey TS, Wray GA. Both noncoding and protein-coding RNAs contribute to gene expression evolution in the primate brain. Genome Biology and Evolution. 2: 67-79. PMID 20333225 DOI: 10.1093/Gbe/Evq002 |
0.44 |
|
| 2010 |
Fedrigo O, Babbitt CC, Wray GA. Genome-wide analysis of differential gene expression and exon usage in the primate brain F1000research. 1. DOI: 10.7490/F1000Research.355.1 |
0.419 |
|
| 2007 |
Haygood R, Fedrigo O, Hanson B, Yokoyama KD, Wray GA. Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution. Nature Genetics. 39: 1140-4. PMID 17694055 DOI: 10.1038/Npre.2007.69.1 |
0.43 |
|
| 2006 |
Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, ... ... Fedrigo O, et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science (New York, N.Y.). 314: 941-52. PMID 17095691 DOI: 10.1126/Science.1133609 |
0.453 |
|
| 2006 |
López JA, Ryburn JA, Fedrigo O, Naylor GJ. Phylogeny of sharks of the family Triakidae (Carcharhiniformes) and its implications for the evolution of carcharhiniform placental viviparity. Molecular Phylogenetics and Evolution. 40: 50-60. PMID 16564708 DOI: 10.1016/J.Ympev.2006.02.011 |
0.622 |
|
| 2005 |
Collins TM, Fedrigo O, Naylor GJ. Choosing the best genes for the job: the case for stationary genes in genome-scale phylogenetics. Systematic Biology. 54: 493-500. PMID 16012114 DOI: 10.1080/10635150590947339 |
0.607 |
|
| 2005 |
Fedrigo O, Adams DC, Naylor GJ. DRUIDS--detection of regions with unexpected internal deviation from stationarity. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 304: 119-28. PMID 15706597 DOI: 10.1002/Jez.B.21032 |
0.561 |
|
| 2004 |
Fedrigo O, Naylor G. A gene-specific DNA sequencing chip for exploring molecular evolutionary change. Nucleic Acids Research. 32: 1208-13. PMID 14973200 DOI: 10.1093/Nar/Gkh210 |
0.589 |
|
| 2001 |
Tavaré S, Adams DC, Fedrigo O, Naylor GJ. A model for phylogenetic inference using structural and chemical covariates. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 215-25. PMID 11262942 |
0.602 |
|
| 2001 |
Baccam P, Thompson RJ, Fedrigo O, Carpenter S, Cornette JL. PAQ: Partition Analysis of Quasispecies. Bioinformatics (Oxford, England). 17: 16-22. PMID 11222259 DOI: 10.1093/Bioinformatics/17.1.16 |
0.404 |
|
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