| Year |
Citation |
Score |
| 2023 |
Didelot X, Franceschi V, Frost SDW, Dennis A, Volz EM. Model design for nonparametric phylodynamic inference and applications to pathogen surveillance. Virus Evolution. 9: vead028. PMID 37229349 DOI: 10.1093/ve/vead028 |
0.333 |
|
| 2022 |
Nascimento FF, Ragonnet-Cronin M, Golubchik T, Danaviah S, Derache A, Fraser C, Volz E. Evaluating whole HIV-1 genome sequence for estimation of incidence and migration in a rural South African community. Wellcome Open Research. 7: 174. PMID 37333843 DOI: 10.12688/wellcomeopenres.17891.1 |
0.368 |
|
| 2021 |
Dennis AM, Frost SDW, Enders K, Cressman AE, Volz E, Adams N, Miller WC, Cohen MS, Mobley V, Samoff E, Eron JJ. HIV-1 Transmission linkages among persons with incident infection to inform public health surveillance. Eclinicalmedicine. 37: 100968. PMID 34195581 DOI: 10.1016/j.eclinm.2021.100968 |
0.324 |
|
| 2020 |
Thompson HA, Imai N, Dighe A, Ainslie KEC, Baguelin M, Bhatia S, Bhatt S, Boonyasiri A, Boyd O, Brazeau NF, Cattarino L, Cooper LV, Coupland H, Cucunuba Z, Cuomo-Dannenburg G, ... ... Volz E, et al. SARS-CoV-2 infection prevalence on repatriation flights from Wuhan City, China. Journal of Travel Medicine. PMID 32830853 DOI: 10.1093/Jtm/Taaa135 |
0.36 |
|
| 2020 |
Didelot X, Siveroni I, Volz EM. Additive uncorrelated relaxed clock models for the dating of genomic epidemiology phylogenies. Molecular Biology and Evolution. PMID 32722797 DOI: 10.1093/Molbev/Msaa193 |
0.325 |
|
| 2020 |
Verity R, Okell LC, Dorigatti I, Winskill P, Whittaker C, Imai N, Cuomo-Dannenburg G, Thompson H, Walker PGT, Fu H, Dighe A, Griffin JT, Baguelin M, Bhatia S, Boonyasiri A, ... ... Volz E, et al. Estimates of the severity of coronavirus disease 2019: a model-based analysis. The Lancet. Infectious Diseases. PMID 32240634 DOI: 10.1016/S1473-3099(20)30243-7 |
0.304 |
|
| 2020 |
Volz EM, Wiuf C, Grad YH, Frost SDW, Dennis AM, Didelot X. Identification of hidden population structure in time-scaled phylogenies. Systematic Biology. PMID 32049340 DOI: 10.1093/Sysbio/Syaa009 |
0.392 |
|
| 2019 |
Nascimento FF, Baral S, Geidelberg L, Mukandavire C, Schwartz SR, Turpin G, Turpin N, Diouf D, Diouf NL, Coly K, Kane CT, Ndour C, Vickerman P, Boily MC, Volz EM. Phylodynamic analysis of HIV-1 subtypes B, C and CRF 02_AG in Senegal. Epidemics. 100376. PMID 31767497 DOI: 10.1016/J.Epidem.2019.100376 |
0.432 |
|
| 2019 |
Li Y, Liu H, Ramadhani HO, Ndembi N, Crowell TA, Kijak G, Robb ML, Ake JA, Kokogho A, Nowak RG, Gaydos C, Baral SD, Volz E, Tovanabutra S, Charurat M, et al. Genetic Clustering Analysis for HIV Infection among Men Who Have Sex with Men in Nigeria: implications for intervention. Aids (London, England). PMID 31634185 DOI: 10.1097/Qad.0000000000002409 |
0.395 |
|
| 2019 |
Le Vu S, Ratmann O, Delpech V, Brown AE, Gill ON, Tostevin A, Dunn D, Fraser C, Volz E. HIV-1 transmission patterns in men who have sex with men: insights from genetic source attribution analysis. Aids Research and Human Retroviruses. PMID 31280593 DOI: 10.1089/Aid.2018.0236 |
0.422 |
|
| 2018 |
Volz EM, Siveroni I. Bayesian phylodynamic inference with complex models. Plos Computational Biology. 14: e1006546. PMID 30422979 DOI: 10.1371/Journal.Pcbi.1006546 |
0.397 |
|
| 2018 |
Mukandavire C, Walker J, Schwartz S, Boily MC, Danon L, Lyons C, Diouf D, Liestman B, Diouf NL, Drame F, Coly K, Muhire RSM, Thiam S, Diallo PAN, Kane CT, ... ... Volz E, et al. Estimating the contribution of key populations towards the spread of HIV in Dakar, Senegal. Journal of the International Aids Society. 21: e25126. PMID 30033604 DOI: 10.1002/Jia2.25126 |
0.433 |
|
| 2018 |
Dennis AM, Volz E, Frost S, Hossain ASMM, Poon AFY, Rebeiro P, Vermund SH, Sterling TR, Kalish ML. HIV-1 transmission clustering and phylodynamics highlight the important role of young men who have sex with men. Aids Research and Human Retroviruses. PMID 30027754 DOI: 10.1089/Aid.2018.0039 |
0.386 |
|
| 2018 |
Volz EM, Le Vu S, Ratmann O, Tostevin A, Dunn D, Orkin C, O'Shea S, Delpech V, Brown A, Gill N, Fraser C. Molecular Epidemiology of HIV-1 Subtype B Reveals Heterogeneous Transmission Risk: Implications for Intervention and Control. The Journal of Infectious Diseases. PMID 29506269 DOI: 10.1093/Infdis/Jiy044 |
0.418 |
|
| 2018 |
Volz EM, Didelot X. Modeling the growth and decline of pathogen effective population size provides insight into epidemic dynamics and drivers of antimicrobial resistance. Systematic Biology. PMID 29432602 DOI: 10.1093/Sysbio/Syy007 |
0.393 |
|
| 2018 |
Geidelberg E, Volz E. A6 Using phylodynamic modelling to estimate the population attributable fraction of HIV spread due to key populations in Dakar, Senegal. Virus Evolution. 4. DOI: 10.1093/Ve/Vey010.005 |
0.409 |
|
| 2017 |
Le Vu S, Ratmann O, Delpech V, Brown AE, Gill ON, Tostevin A, Fraser C, Volz EM. Comparison of cluster-based and source-attribution methods for estimating transmission risk using large HIV sequence databases. Epidemics. PMID 29089285 DOI: 10.1016/J.Epidem.2017.10.001 |
0.419 |
|
| 2017 |
Volz EM, Ndembi N, Nowak R, Kijak GH, Idoko J, Dakum P, Royal W, Baral S, Dybul M, Blattner WA, Charurat M. Phylodynamic analysis to inform prevention efforts in mixed HIV epidemics. Virus Evolution. 3: vex014. PMID 28775893 DOI: 10.1093/Ve/Vex014 |
0.441 |
|
| 2017 |
Volz EM, Romero-Severson E, Leitner T. Phylodynamic inference across epidemic scales. Molecular Biology and Evolution. PMID 28204593 DOI: 10.1093/Molbev/Msx077 |
0.449 |
|
| 2017 |
Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain AS, Joy JB, Kendall M, Kühnert D, Leventhal GE, ... ... Volz E, et al. Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison. Molecular Biology and Evolution. 34: 185-203. PMID 28053012 DOI: 10.1093/Molbev/Msw217 |
0.442 |
|
| 2016 |
Aiello AE, Simanek AM, Eisenberg MC, Walsh AR, Davis B, Volz E, Cheng C, Rainey JJ, Uzicanin A, Gao H, Osgood N, Knowles D, Stanley K, Tarter K, Monto AS. Design and methods of a social network isolation study for reducing respiratory infection transmission: The eX-FLU cluster randomized trial. Epidemics. 15: 38-55. PMID 27266848 DOI: 10.1016/J.Epidem.2016.01.001 |
0.328 |
|
| 2016 |
Volz E, Nowak R, Ndembi N, Baral S, Blattner W, Charurat M. C-103 Genetic diversity of HIV reveals the epidemiological role of high risk groups in Nigeria Jaids Journal of Acquired Immune Deficiency Syndromes. 71: 47. DOI: 10.1097/01.Qai.0000479750.21780.14 |
0.346 |
|
| 2015 |
Romero-Severson EO, Volz E, Koopman JS, Leitner T, Ionides EL. Dynamic Variation in Sexual Contact Rates in a Cohort of HIV-Negative Gay Men. American Journal of Epidemiology. 182: 255-62. PMID 25995288 DOI: 10.1093/Aje/Kwv044 |
0.421 |
|
| 2014 |
Romero-Severson EO, Meadors GD, Volz EM. A generating function approach to HIV transmission with dynamic contact rates. Mathematical Modelling of Natural Phenomena. 9: 121-135. PMID 27087760 DOI: 10.1051/Mmnp/20149208 |
0.392 |
|
| 2014 |
Volz E, Pond S. Phylodynamic analysis of ebola virus in the 2014 sierra leone epidemic. Plos Currents. 6. PMID 25914858 DOI: 10.1371/Currents.Outbreaks.6F7025F1271821D4C815385B08F5F80E |
0.386 |
|
| 2014 |
Volz EM, Frost SD. Sampling through time and phylodynamic inference with coalescent and birth-death models. Journal of the Royal Society, Interface / the Royal Society. 11: 20140945. PMID 25401173 DOI: 10.1098/Rsif.2014.0945 |
0.345 |
|
| 2014 |
Rasmussen DA, Volz EM, Koelle K. Phylodynamic inference for structured epidemiological models. Plos Computational Biology. 10: e1003570. PMID 24743590 DOI: 10.1371/Journal.Pcbi.1003570 |
0.434 |
|
| 2014 |
Romero-Severson EO, Meadors GD, Volz EM. Corrigendum to "A Generating Function Approach to HIV Transmission with Dynamic Contact Rates" Mathematical Modelling of Natural Phenomena. 9: 178-181. DOI: 10.1051/Mmnp/20149212 |
0.391 |
|
| 2013 |
Volz EM, Frost SD. Inferring the source of transmission with phylogenetic data. Plos Computational Biology. 9: e1003397. PMID 24367249 DOI: 10.1371/Journal.Pcbi.1003397 |
0.417 |
|
| 2013 |
Volz EM, Ionides E, Romero-Severson EO, Brandt MG, Mokotoff E, Koopman JS. HIV-1 transmission during early infection in men who have sex with men: a phylodynamic analysis. Plos Medicine. 10: e1001568; discussion. PMID 24339751 DOI: 10.1371/Journal.Pmed.1001568 |
0.474 |
|
| 2013 |
Miller JC, Volz EM. Incorporating disease and population structure into models of SIR disease in contact networks. Plos One. 8: e69162. PMID 23990880 DOI: 10.1371/Journal.Pone.0069162 |
0.408 |
|
| 2013 |
Romero-Severson EO, Alam SJ, Volz E, Koopman J. Acute-stage transmission of HIV: Effect of volatile contact rates Epidemiology. 24: 516-521. PMID 23689754 DOI: 10.1097/Ede.0B013E318294802E |
0.422 |
|
| 2013 |
Alam SJ, Zhang X, Romero-Severson EO, Henry C, Zhong L, Volz EM, Brenner BG, Koopman JS. Detectable signals of episodic risk effects on acute HIV transmission: strategies for analyzing transmission systems using genetic data. Epidemics. 5: 44-55. PMID 23438430 DOI: 10.1016/J.Epidem.2012.11.003 |
0.455 |
|
| 2013 |
Frost SD, Volz EM. Modelling tree shape and structure in viral phylodynamics. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120208. PMID 23382430 DOI: 10.1098/Rstb.2012.0208 |
0.462 |
|
| 2013 |
Miller JC, Volz EM. Model hierarchies in edge-based compartmental modeling for infectious disease spread. Journal of Mathematical Biology. 67: 869-99. PMID 22911242 DOI: 10.1007/S00285-012-0572-3 |
0.31 |
|
| 2013 |
Volz EM, Koelle K, Bedford T. Idealized caricatures of virus phylogenies that show the effects of population structure. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1002947.G002 |
0.304 |
|
| 2012 |
Zhang X, Zhong L, Romero-Severson E, Alam SJ, Henry CJ, Volz EM, Koopman JS. Episodic HIV Risk Behavior Can Greatly Amplify HIV Prevalence and the Fraction of Transmissions from Acute HIV Infection. Statistical Communications in Infectious Diseases. 4. PMID 24058722 DOI: 10.1515/1948-4690.1041 |
0.447 |
|
| 2012 |
Romero-Severson EO, Alam SJ, Volz EM, Koopman JS. Heterogeneity in Number and Type of Sexual Contacts in a Gay Urban Cohort. Statistical Communications in Infectious Diseases. 4. PMID 23638243 DOI: 10.1515/1948-4690.1042 |
0.344 |
|
| 2012 |
Volz EM, Koopman JS, Ward MJ, Brown AL, Frost SD. Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection. Plos Computational Biology. 8: e1002552. PMID 22761556 DOI: 10.1371/Journal.Pcbi.1002552 |
0.408 |
|
| 2012 |
Volz EM. Complex population dynamics and the coalescent under neutrality. Genetics. 190: 187-201. PMID 22042576 DOI: 10.1534/Genetics.111.134627 |
0.383 |
|
| 2012 |
Miller JC, Slim AC, Volz EM. Edge-based compartmental modelling for infectious disease spread. Journal of the Royal Society, Interface / the Royal Society. 9: 890-906. PMID 21976638 DOI: 10.1098/Rsif.2011.0403 |
0.339 |
|
| 2011 |
Volz EM, Miller JC, Galvani A, Ancel Meyers L. Effects of heterogeneous and clustered contact patterns on infectious disease dynamics. Plos Computational Biology. 7: e1002042. PMID 21673864 DOI: 10.1371/Journal.Pcbi.1002042 |
0.37 |
|
| 2011 |
Craft ME, Volz E, Packer C, Meyers LA. Disease transmission in territorial populations: the small-world network of Serengeti lions. Journal of the Royal Society, Interface / the Royal Society. 8: 776-86. PMID 21030428 DOI: 10.1098/Rsif.2010.0511 |
0.374 |
|
| 2010 |
Volz E, Frost SD, Rothenberg R, Meyers LA. Epidemiological bridging by injection drug use drives an early HIV epidemic. Epidemics. 2: 155-64. PMID 21352786 DOI: 10.1016/J.Epidem.2010.06.003 |
0.46 |
|
| 2010 |
Frost SD, Volz EM. Viral phylodynamics and the search for an 'effective number of infections'. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 1879-90. PMID 20478883 DOI: 10.1098/Rstb.2010.0060 |
0.397 |
|
| 2009 |
Volz EM, Kosakovsky Pond SL, Ward MJ, Leigh Brown AJ, Frost SD. Phylodynamics of infectious disease epidemics. Genetics. 183: 1421-30. PMID 19797047 DOI: 10.1534/Genetics.109.106021 |
0.466 |
|
| 2009 |
Abramovitz D, Volz EM, Strathdee SA, Patterson TL, Vera A, Frost SD. Using respondent-driven sampling in a hidden population at risk of HIV infection: who do HIV-positive recruiters recruit? Sexually Transmitted Diseases. 36: 750-6. PMID 19704394 DOI: 10.1097/Olq.0B013E3181B0F311 |
0.429 |
|
| 2009 |
Craft ME, Volz E, Packer C, Meyers LA. Distinguishing epidemic waves from disease spillover in a wildlife population. Proceedings. Biological Sciences / the Royal Society. 276: 1777-85. PMID 19324800 DOI: 10.1098/Rspb.2008.1636 |
0.403 |
|
| 2009 |
Volz E, Meyers LA. Epidemic thresholds in dynamic contact networks. Journal of the Royal Society, Interface / the Royal Society. 6: 233-41. PMID 18664429 DOI: 10.1098/Rsif.2008.0218 |
0.389 |
|
| 2008 |
Volz E. SIR dynamics in random networks with heterogeneous connectivity Journal of Mathematical Biology. 56: 293-310. PMID 17668212 DOI: 10.1007/S00285-007-0116-4 |
0.375 |
|
| 2008 |
Volz E, Meyers LA. Correction for Volz and Meyers, Susceptible-infected-recovered epidemics in dynamic contact networks Proceedings of the Royal Society B: Biological Sciences. 275: 2898-2898. DOI: 10.1098/Rspb.2008.3003 |
0.333 |
|
| 2007 |
Volz E, Meyers LA. Susceptible-infected-recovered epidemics in dynamic contact networks Proceedings of the Royal Society B: Biological Sciences. 274: 2925-2933. PMID 17878137 DOI: 10.1098/Rspb.2007.1159 |
0.402 |
|
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