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W. Graham Richards - Publications

Affiliations: 
Chemistry University of Oxford, Oxford, United Kingdom 
Area:
computational approaches to drug discovery
Website:
http://research.chem.ox.ac.uk/graham-richards.aspx

78 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2011 Armstrong MS, Finn PW, Morris GM, Richards WG. Improving the accuracy of ultrafast ligand-based screening: incorporating lipophilicity into ElectroShape as an extra dimension. Journal of Computer-Aided Molecular Design. 25: 785-90. PMID 21822723 DOI: 10.1007/S10822-011-9463-8  0.318
2010 Armstrong MS, Morris GM, Finn PW, Sharma R, Moretti L, Cooper RI, Richards WG. ElectroShape: fast molecular similarity calculations incorporating shape, chirality and electrostatics. Journal of Computer-Aided Molecular Design. 24: 789-801. PMID 20614163 DOI: 10.1007/S10822-010-9374-0  0.316
2010 Ballester PJ, Westwood I, Laurieri N, Sim E, Richards WG. Prospective virtual screening with Ultrafast Shape Recognition: the identification of novel inhibitors of arylamine N-acetyltransferases. Journal of the Royal Society, Interface / the Royal Society. 7: 335-42. PMID 19586957 DOI: 10.1098/Rsif.2009.0170  0.306
2009 Armstrong MS, Morris GM, Finn PW, Sharma R, Richards WG. Molecular similarity including chirality. Journal of Molecular Graphics & Modelling. 28: 368-70. PMID 19801197 DOI: 10.1016/J.Jmgm.2009.09.002  0.303
2009 Ballester PJ, Finn PW, Richards WG. Ultrafast shape recognition: evaluating a new ligand-based virtual screening technology. Journal of Molecular Graphics & Modelling. 27: 836-45. PMID 19188082 DOI: 10.1016/J.Jmgm.2009.01.001  0.339
2009 Richards WG. Accurate calculations in drug discovery research: the biological roles of magnesium and calcium ions Molecular Physics. 107: 819-822. DOI: 10.1080/00268970802649617  0.353
2007 Ballester PJ, Richards WG. Ultrafast shape recognition to search compound databases for similar molecular shapes. Journal of Computational Chemistry. 28: 1711-23. PMID 17342716 DOI: 10.1002/Jcc.20681  0.346
2007 Ballester PJ, Richards WG. Ultrafast shape recognition for similarity search in molecular databases Proceedings of the Royal Society a: Mathematical, Physical and Engineering Sciences. 463: 1307-1321. DOI: 10.1098/Rspa.2007.1823  0.354
2006 Gledhill R, Kent S, Hudson B, Richards WG, Essex JW, Frey JG. A computer-aided drug discovery system for chemistry teaching. Journal of Chemical Information and Modeling. 46: 960-70. PMID 16711714 DOI: 10.1021/Ci050383Q  0.52
2005 Huang M, Richards WG, Grant GH. Diketoacid HIV-1 integrase inhibitors: An ab initio study. The Journal of Physical Chemistry. A. 109: 5198-202. PMID 16833876 DOI: 10.1021/Jp045247N  0.353
2004 Topf M, Richards WG. Theoretical studies on the deacylation step of serine protease catalysis in the gas phase, in solution, and in elastase. Journal of the American Chemical Society. 126: 14631-41. PMID 15521783 DOI: 10.1021/Ja047010A  0.355
2003 Allen BC, Grant GH, Richards WG. Calculation of protein domain structural similarity using two-dimensional representations. Journal of Chemical Information and Computer Sciences. 43: 134-43. PMID 12546546 DOI: 10.1021/Ci020275T  0.304
2002 Topf M, Várnai P, Richards WG. Ab initio QM/MM dynamics simulation of the tetrahedral intermediate of serine proteases: insights into the active site hydrogen-bonding network. Journal of the American Chemical Society. 124: 14780-8. PMID 12465991 DOI: 10.1021/Ja026219Q  0.301
2002 Davies EK, Richards WG. The potential of Internet computing for drug discovery. Drug Discovery Today. 7: S99-103. PMID 12047887 DOI: 10.1016/S1359-6446(02)02218-3  0.316
2002 Topf M, Várnai P, Schofield CJ, Richards WG. Molecular dynamics simulations of the acyl-enzyme and the tetrahedral intermediate in the deacylation step of serine proteases. Proteins. 47: 357-69. PMID 11948789 DOI: 10.1002/Prot.10097  0.32
2001 Allen BC, Grant GH, Richards WG. Similarity calculations using two-dimensional molecular representations. Journal of Chemical Information and Computer Sciences. 41: 330-7. PMID 11277719 DOI: 10.1021/Ci0003956  0.379
2001 Remko M, Walsh OA, Richards WG. Molecular structure and gas-phase reactivity of clonidine and rilmenidine: Two-layered ONIOM calculations Physical Chemistry Chemical Physics. 3: 901-907. DOI: 10.1039/B009660L  0.361
2001 Remko M, Walsh OA, Richards WG. Theoretical study of molecular structure, tautomerism, and geometrical isomerism of moxonidine: Two-layered ONIOM calculations Journal of Physical Chemistry A. 105: 6926-6931. DOI: 10.1021/Jp010637K  0.368
2001 Topf M, Várnai P, Richards WG. Quantum mechanical/molecular mechanical study of three stationary points along the deacylation step of the catalytic mechanism of elastase Theoretical Chemistry Accounts. 106: 146-151. DOI: 10.1007/S002140000246  0.32
2000 Robinson DD, Lyne PD, Richards WG. Partial molecular alignment via local structure analysis Journal of Chemical Information and Computer Sciences. 40: 503-12. PMID 10761157 DOI: 10.1021/Ci990272P  0.327
2000 Remko M, Lyne PD, Richards WG. Molecular structure and gas-phase reactivity of zileuton and its N- dehydroxylated metabolite: Two-layered ONIOM calculations Physical Chemistry Chemical Physics. 2: 2511-2514. DOI: 10.1039/B001064M  0.301
1999 Várnai P, Richards WG, Lyne PD. Modelling the catalytic reaction in human aldose reductase. Proteins. 37: 218-27. PMID 10584067 DOI: 10.1002/(Sici)1097-0134(19991101)37:2<218::Aid-Prot7>3.0.Co;2-E  0.335
1999 Remko M, Lyne PD, Richards WG. Molecular structure, gas-phase acidity and basicity of N-hydroxyurea Physical Chemistry Chemical Physics. 1: 5353-5357. DOI: 10.1039/A906667E  0.313
1999 Mulholland AJ, Richards WG. Modeling the citrate synthase reaction: QM/MM and small model calculations Acs Symposium Series. 721: 448-461.  0.463
1998 Mulholland AJ, Richards WG. Calculations on the substrates of citrate synthase I. Oxaloacetate Journal of Molecular Structure: Theochem. 429: 13-21. DOI: 10.1016/S0166-1280(97)00294-7  0.415
1998 Mulholland AJ, Richards WG. A model of the condensation step in the citrate synthase reaction Journal of Molecular Structure: Theochem. 427: 175-184. DOI: 10.1016/S0166-1280(97)00200-5  0.308
1998 Good AC, Richards WG. Explicit Calculation of 3D Molecular Similarity Perspectives in Drug Discovery and Design. 9: 321-338. DOI: 10.1007/0-306-46857-3_17  0.345
1997 Mulholland AJ, Richards WG. Acetyl-CoA enolization in citrate synthase: A quantum mechanical/molecular mechanical (QM/MM) study Proteins: Structure, Function and Genetics. 27: 9-25. PMID 9037708 DOI: 10.1002/(SICI)1097-0134(199701)27:1<9::AID-PROT3>3.0.CO;2-D  0.492
1997 Robinson DD, Barlow TW, Richards WG. The utilization of reduced dimensional representations of molecular structure for rapid molecular similarity calculations Journal of Chemical Information and Computer Sciences. 37: 943-950. DOI: 10.1021/Ci970423T  0.355
1997 Parretti MF, Kroemer RT, Rothman JH, Richards WG. Alignment of molecules by the Monte Carlo optimization of molecular similarity indices Journal of Computational Chemistry. 18: 1344-1353. DOI: 10.1002/(Sici)1096-987X(199708)18:11<1344::Aid-Jcc2>3.0.Co;2-L  0.357
1996 Elcock AH, Rodger A, Richards WG. Theoretical studies of the intercalation of 9-hydroxyellipticine in DNA Biopolymers. 39: 309-326. PMID 8756512 DOI: 10.1002/(Sici)1097-0282(199609)39:3<309::Aid-Bip4>3.0.Co;2-S  0.33
1996 Good AC, Richards WG. The extension and application of molecular similarity calculations to drug design Drug Information Journal. 30: 371-388. DOI: 10.1177/009286159603000206  0.419
1996 Lowis DR, Richards WG. Molecular Parameterisation and the Theoretical Calculation of Electrode Potentials Journal of Molecular Modeling. 2: 136-148. DOI: 10.1007/S0089460020136  0.421
1995 Elcock AH, Lyne PD, Mulholland AJ, Nandra A, Richards WG. Combined quantum and molecular mechanical study of DNA cross-linking by nitrous acid Journal of the American Chemical Society. 117: 4706-4707. DOI: 10.1021/Ja00121A029  0.496
1995 Richards WG. Molecular similarity and dissimilarity Molecular Engineering. 5: 229-233. DOI: 10.1007/Bf00999591  0.328
1994 Essex JW, Hann MM, Richards WG. Molecular dynamics simulation of a hydrated phospholipid bilayer. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 344: 239-60. PMID 7938199 DOI: 10.1098/Rstb.1994.0064  0.555
1994 Worth GA, Richards WG. Calculation of the tautomer ratio of histamine in aqueous solution using free energy perturbation methods: An in-depth study Journal of the American Chemical Society. 116: 239-250. DOI: 10.1021/Ja00080A028  0.384
1994 Mulholland AJ, Richards WG. A comparison of semiempirical and ab initio transition states for HF elimination in unimolecular decompositions International Journal of Quantum Chemistry. 51: 161-172. DOI: 10.1002/Qua.560510306  0.528
1993 Mulholland AJ, Grant GH, Richards WG. Computer modelling of enzyme catalysed reaction mechanisms Protein Engineering. 6: 133-147. PMID 8475041 DOI: 10.1093/protein/6.2.133  0.421
1993 Lowis DR, Essex JW, Richards WG. Theoretical Calculation of a Solution Phase Torsional Free Energy Profile. 77-Ethylimidazole in Water Molecular Simulation. 9: 369-383. DOI: 10.1080/08927029308048268  0.611
1992 Meyer AY, Richards WG. Similarity of molecular shape. Journal of Computer-Aided Molecular Design. 5: 427-39. PMID 1770379 DOI: 10.1007/Bf00125663  0.351
1992 Reynolds CA, Essex JW, Richards WG. Atomic charges for variable molecular conformations Journal of the American Chemical Society. 114: 9075-9079. DOI: 10.1021/Ja00049A045  0.679
1992 Essex JW, Reynolds CA, Richards WG. Theoretical determination of partition coefficients Journal of the American Chemical Society. 114: 3634-3639. DOI: 10.1021/Ja00036A009  0.691
1992 Richards WG. Computer-aided drug discovery Proceedings of the Royal Society of Edinburgh. Section B. Biological Sciences. 99: 105-111. DOI: 10.1017/S0269727000013087  0.329
1992 Reynolds CA, Ferenczy GG, Richards WG. Methods for determining the reliability of semiempirical electrostatic potentials and potential derived charges Journal of Molecular Structure: Theochem. 256: 249-269. DOI: 10.1016/0166-1280(92)87170-5  0.604
1992 Lister SG, Reynolds CA, Richards WG. Theoretical calculation of electrode potentials: Electron-withdrawing compounds International Journal of Quantum Chemistry. 41: 293-310. DOI: 10.1002/Qua.560410206  0.632
1991 Dughan L, Burt C, Richards WG. The study of peptide bond isosteres using molecular similarity Journal of Molecular Structure-Theochem. 235: 481-488. DOI: 10.1016/0166-1280(91)85120-V  0.3
1990 Burt C, Richards WG. Molecular similarity: the introduction of flexible fitting. Journal of Computer-Aided Molecular Design. 4: 231-8. PMID 2280261 DOI: 10.1007/Bf00125012  0.324
1990 Worth GA, King PM, Richards WG. Histamine tautomerism and its mode of action. Biochimica Et Biophysica Acta. 1036: 158-161. PMID 2223833 DOI: 10.1016/0304-4165(90)90028-U  0.325
1990 King PM, Reynolds CA, Essex JW, Worth GA, Richards WG. Free Energy Calculations of Pharmaceutically Important Properties Molecular Simulation. 5: 265-275. DOI: 10.1080/08927029008022413  0.705
1990 King PM, Reynolds CA, Richards WG. The theoretical calculation of basicities: an homologous amine series Journal of Molecular Structure: Theochem. 208: 205-221. DOI: 10.1016/0166-1280(90)80007-B  0.615
1990 Ferenczy GG, Reynolds CA, Richards WG. Semiempirical AM1 electrostatic potentials and AM1 electrostatic potential derived charges: A comparison withab initio values Journal of Computational Chemistry. 11: 159-169. DOI: 10.1002/Jcc.540110202  0.591
1989 Worth GA, King PM, Richards WG. Theoretical calculation of tautomer equilibria in solution: 4-(5-)methylimidazole. Biochimica Et Biophysica Acta. 993: 134-136. PMID 2804121 DOI: 10.1016/0304-4165(89)90154-2  0.371
1989 Essex JW, Reynolds CA, Richards WG. Relative partition coefficients from partition functions: A theoretical approach to drug transport Journal of the Chemical Society, Chemical Communications. 1152-1154. DOI: 10.1039/C39890001152  0.683
1989 Menziani MC, Reynolds CA, Richards WG. Rational drug design: Binding free energy differences of carbonic anhydrase inhibitors Journal of the Chemical Society, Chemical Communications. 853-855. DOI: 10.1039/C39890000853  0.576
1989 Compton RG, King PM, Reynolds CA, Richards W, Waller AM. The oxidation potential of 1,4-diaminobenzene Journal of Electroanalytical Chemistry and Interfacial Electrochemistry. 258: 79-88. DOI: 10.1016/0022-0728(89)85163-0  0.567
1988 Cheney J, Cheney BV, Richards WG. Calculation of NH ··· π hydrogen bond energies in basic pancreatic trypsin inhibitor Biochimica Et Biophysica Acta. 954: 137-139. PMID 2451933 DOI: 10.1016/0167-4838(88)90063-5  0.339
1988 Reynolds CA, King PM, Richards WG. Accurate redox potentials from theoretical calculations: Methyl-substituted benzoquinones Journal of the Chemical Society, Chemical Communications. 1434-1436. DOI: 10.1039/C39880001434  0.615
1987 Hodgkin EE, Richards WG. Molecular similarity based on electrostatic potential and electric field International Journal of Quantum Chemistry. 32: 105-110. DOI: 10.1002/Qua.560320814  0.351
1987 Nakayama A, Richards WG. A Quantum Chemical Study of Insect Juvenile Hormone Mimics: The Active Conformation and the Electrostatic Similarities Quantitative Structure-Activity Relationships. 6: 153-157. DOI: 10.1002/Qsar.19870060402  0.357
1986 Mian IS, Richards WG. Theoretical binding energies of inhibitors to enzymes. Biochimica Et Biophysica Acta. 870: 177-179. PMID 3947647 DOI: 10.1016/0167-4838(86)90022-1  0.334
1986 Adelantado JM, Richards WG. The geometry of a steroid from quantum mechanical calculation: progesterone Journal of the Chemical Society-Perkin Transactions 1. 17: 1253-1254. DOI: 10.1039/P29860001253  0.38
1986 Hodgkin EE, Richards WG. A semi-empirical method for calculating molecular similarity Journal of the Chemical Society, Chemical Communications. 1342-1344. DOI: 10.1039/C39860001342  0.401
1986 Bowen-Jenkins PE, Richards WG. Molecular similarity in terms of valence electron density Journal of the Chemical Society, Chemical Communications. 2: 133-135. DOI: 10.1039/C39860000133  0.337
1986 Cuthbertson AF, Richards WG. The effect of fluorination on the binding energies of drugs Journal of Molecular Structure-Theochem. 134: 411-414. DOI: 10.1016/0166-1280(86)80012-4  0.379
1986 Bowen‐Jenkins PE, Richards WG. Quantitative measures of similarity between pharmacologically active compounds International Journal of Quantum Chemistry. 30: 763-768. DOI: 10.1002/Qua.560300605  0.331
1985 Cuthbertson AF, Richards WG. Binding of inhibitors to dihydrofolate reductase by quantum chemical calculation Journal of Molecular Structure-Theochem. 124: 167-174. DOI: 10.1016/0166-1280(85)87028-7  0.359
1985 Holmes RE, Richards WG, Lambros SA. The polarization of an enzyme by an inhibitor. The influence of boronic acid on residues in α-chymotrypsin A Journal of Molecular Structure-Theochem. 121: 273-279. DOI: 10.1016/0166-1280(85)80066-X  0.336
1984 Richards WG, Cuthbertson AF. Binding of methotrexate to dihydrofolate reductase by quantum chemical calculation Journal of the Chemical Society, Chemical Communications. 167-168. DOI: 10.1039/C39840000167  0.31
1984 Cuthbertson AF, Naylor CB, Richards WG. Intermolecular potentials using partial charges in quantum mechanical calculations Journal of Molecular Structure-Theochem. 106: 287-291. DOI: 10.1016/0166-1280(84)85033-2  0.411
1984 Lambros SA, Richards WG, Marchington AF. Theoretical calculations on enzyme—substrate interactions: The binding of n-alkylboronic acids to α-chymotrypsin A Journal of Molecular Structure-Theochem. 109: 61-71. DOI: 10.1016/0166-1280(84)80135-9  0.348
1982 Elliott RJ, Richards WG. A theoretical investigation of some stereoelectronic effects Journal of the Chemical Society-Perkin Transactions 1. 13: 1005-1008. DOI: 10.1039/P29820001005  0.365
1982 Elliott RJ, Richards WG. Quantitative frontier orbital theory. Part 3. Radical reactions Journal of the Chemical Society-Perkin Transactions 1. 13: 943-945. DOI: 10.1039/P29820000943  0.329
1982 Brown JM, Elliott RJ, Richards WG. Ab initio molecular orbital calculations on allylic anion–olefin interactions Journal of the Chemical Society-Perkin Transactions 1. 13: 485-488. DOI: 10.1039/P29820000485  0.409
1982 Elliott RJ, Richards WG. The concept of bond order Journal of Molecular Structure-Theochem. 87: 211-216. DOI: 10.1016/0166-1280(82)80055-9  0.301
1982 Elliott RJ, Sackwild V, Richards WG. Quantitative frontier orbital theory: Part I. Electrophilic aromatic substitution Journal of Molecular Structure-Theochem. 86: 301-314. DOI: 10.1016/0166-1280(82)80022-5  0.319
1982 Elliott RJ, Richards WG. Quantitative frontier orbital theory: Part II. A theoretical interpretation of the rules for ring closure Journal of Molecular Structure-Theochem. 87: 247-254. DOI: 10.1016/0166-1280(82)80004-3  0.328
1973 Farnell L, Richards WG. Ab initio calculations on the electrocyclic transformation of the cyclopropyl radical to the allyl radical Journal of the Chemical Society, Chemical Communications. 334-335. DOI: 10.1039/C39730000334  0.34
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