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Wei Wang - Publications

Affiliations: 
The Hong Kong University of Science and Technology, PR China 
Area:
Machine learning, computational chemistry
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15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Gu H, Wang W, Cao S, Unarta IC, Yao Y, Sheong FK, Huang X. RPnet: a reverse-projection-based neural network for coarse-graining metastable conformational states for protein dynamics. Physical Chemistry Chemical Physics : Pccp. PMID 34985469 DOI: 10.1039/d1cp03622j  0.38
2021 Oh J, Shin J, Unarta IC, Wang W, Feldman AW, Karadeema RJ, Xu L, Xu J, Chong J, Krishnamurthy R, Huang X, Romesberg FE, Wang D. Transcriptional processing of an unnatural base pair by eukaryotic RNA polymerase II. Nature Chemical Biology. PMID 34140682 DOI: 10.1038/s41589-021-00817-3  0.312
2021 Quinn TR, Steussy CN, Haines BE, Lei J, Wang W, Sheong FK, Stauffacher CV, Huang X, Norrby PO, Helquist P, Wiest O. Microsecond timescale MD simulations at the transition state of HMGR predict remote allosteric residues. Chemical Science. 12: 6413-6418. PMID 34084441 DOI: 10.1039/d1sc00102g  0.369
2021 Konovalov KA, Wang W, Wang G, Goonetilleke EC, Gao X, Wang D, Huang X. A Comprehensive mechanism for 5-carboxylcytosine induced transcriptional pausing revealed by Markov state models. The Journal of Biological Chemistry. 100735. PMID 33991521 DOI: 10.1016/j.jbc.2021.100735  0.328
2021 Unarta IC, Cao S, Kubo S, Wang W, Cheung PP, Gao X, Takada S, Huang X. Role of bacterial RNA polymerase gate opening dynamics in DNA loading and antibiotics inhibition elucidated by quasi-Markov State Model. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33883282 DOI: 10.1073/pnas.2024324118  0.338
2021 Wang Y, Wang W, Wu H, Zhou Y, Qin X, Wang Y, Wu J, Sun XY, Yang Y, Xu H, Qian X, Pang X, Li Y, Zhang Z, Han J, et al. The essential role of PRAK in tumor metastasis and its therapeutic potential. Nature Communications. 12: 1736. PMID 33741957 DOI: 10.1038/s41467-021-21993-9  0.337
2020 Cao S, Montoya-Castillo A, Wang W, Markland TE, Huang X. On the advantages of exploiting memory in Markov state models for biomolecular dynamics. The Journal of Chemical Physics. 153: 014105. PMID 32640825 DOI: 10.1063/5.0010787  0.443
2020 Wu J, Wang Y, Zhou Y, Wang Y, Sun X, Zhao Y, Guan Y, Zhang Y, Wang W. PPARγ as an E3 Ubiquitin-Ligase Impedes Phosphate-Stat6 Stability and Promotes Prostaglandins E-Mediated Inhibition of IgE Production in Asthma. Frontiers in Immunology. 11: 1224. PMID 32636842 DOI: 10.3389/fimmu.2020.01224  0.333
2019 Wang Y, Wang Y, Wu J, Liu C, Zhou Y, Mi L, Zhang Y, Wang W. PRAK Is Required for the Formation of Neutrophil Extracellular Traps. Frontiers in Immunology. 10: 1252. PMID 31231384 DOI: 10.3389/fimmu.2019.01252  0.35
2019 Wang Y, Wang Y, Wu J, Wang W, Zhang Y. Oxygen partial pressure plays a crucial role in B16 melanoma cell survival by regulating autophagy and mitochondrial functions. Biochemical and Biophysical Research Communications. PMID 30745108 DOI: 10.1016/j.bbrc.2019.01.135  0.335
2018 Konovalov KA, Wang W, Huang X. Conformational selection turns on phenylalanine hydroxylase. The Journal of Biological Chemistry. 293: 19544-19545. PMID 30578407 DOI: 10.1074/Jbc.H118.006676  0.408
2018 Wang W, Liang T, Sheong FK, Fan X, Huang X. An efficient Bayesian kinetic lumping algorithm to identify metastable conformational states via Gibbs sampling. The Journal of Chemical Physics. 149: 072337. PMID 30134698 DOI: 10.1063/1.5027001  0.505
2018 Peng J, Wang W, Yu Y, Gu H, Huang X. Clustering algorithms to analyze molecular dynamics simulation trajectories for complex chemical and biological systems Chinese Journal of Chemical Physics. 31: 404-420. DOI: 10.1063/1674-0068/31/Cjcp1806147  0.598
2017 Wang W, Cao S, Zhu L, Huang X. Constructing Markov State Models to elucidate the functional conformational changes of complex biomolecules Wires Computational Molecular Science. 8. DOI: 10.1002/Wcms.1343  0.602
2016 Liu S, Zhu L, Sheong FK, Wang W, Huang X. Adaptive partitioning by local density-peaks: An efficient density-based clustering algorithm for analyzing molecular dynamics trajectories. Journal of Computational Chemistry. PMID 27868222 DOI: 10.1002/Jcc.24664  0.681
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