| Year |
Citation |
Score |
| 2023 |
Cao G, Balkey M, Jin Q, Brown E, Allard M, de Melo ANF, Pedrosa GTS, de Oliveira TCRM, Magnani M, Macarisin D. Genomic and phylogenetic analysis of Salmonella enterica serovar Enteritidis strains linked to multiple outbreaks in Brazil. Letters in Applied Microbiology. 76. PMID 36688781 DOI: 10.1093/lambio/ovac045 |
0.312 |
|
| 2022 |
Gorski L, Cooley MB, Oryang D, Carychao D, Nguyen K, Luo Y, Weinstein L, Brown E, Allard M, Mandrell RE, Chen Y. Prevalence and Clonal Diversity of over 1,200 Listeria monocytogenes Isolates Collected from Public Access Waters near Produce Production Areas on the Central California Coast during 2011 to 2016. Applied and Environmental Microbiology. 88: e0035722. PMID 35377164 DOI: 10.1128/aem.00357-22 |
0.343 |
|
| 2021 |
Chen Y, Simonetti T, Peter K, Jin Q, Brown E, LaBorde LF, Macarisin D. Genetic Diversity of Isolated From Three Commercial Tree Fruit Packinghouses and Evidence of Persistent and Transient Contamination. Frontiers in Microbiology. 12: 756688. PMID 35082763 DOI: 10.3389/fmicb.2021.756688 |
0.306 |
|
| 2021 |
Naum M, Brown EW, Mason-Gamer RJ. Is a robust phylogeny of the enterobacterial plant pathogens attainable? Cladistics : the International Journal of the Willi Hennig Society. 27: 80-93. PMID 34969206 DOI: 10.1111/j.1096-0031.2010.00313.x |
0.329 |
|
| 2021 |
Haendiges J, Davidson GR, Pettengill JB, Reed E, Ramachandran P, Blessington T, Miller JD, Anderson N, Myoda S, Brown EW, Zheng J, Tikekar R, Hoffmann M. Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain. Plos One. 16: e0259471. PMID 34735518 DOI: 10.1371/journal.pone.0259471 |
0.317 |
|
| 2021 |
Lee S, Parsons C, Chen Y, Hanafy Z, Brown E, Kathariou S. Identification and Characterization of a Novel Genomic Island Harboring Cadmium and Arsenic Resistance Genes in . Biomolecules. 11. PMID 33920493 DOI: 10.3390/biom11040560 |
0.322 |
|
| 2021 |
de Melo ANF, Monte DFM, de Souza Pedrosa GT, Balkey M, Jin Q, Brown E, Allard M, de Oliveira TCRM, Cao G, Magnani M, Macarisin D. Genomic investigation of antimicrobial resistance determinants and virulence factors in Salmonella enterica serovars isolated from contaminated food and human stool samples in Brazil. International Journal of Food Microbiology. 343: 109091. PMID 33639477 DOI: 10.1016/j.ijfoodmicro.2021.109091 |
0.312 |
|
| 2020 |
Yang H, Hoffmann M, Allard MW, Brown EW, Chen Y. Microevolution and Gain or Loss of Mobile Genetic Elements of Outbreak-Related in Food Processing Environments Identified by Whole Genome Sequencing Analysis. Frontiers in Microbiology. 11: 866. PMID 32547499 DOI: 10.3389/fmicb.2020.00866 |
0.356 |
|
| 2020 |
Hoffmann M, Miller J, Melka D, Allard MW, Brown EW, Pettengill JB. Temporal Dynamics of subsp. Serovar Agona Isolates From a Recurrent Multistate Outbreak. Frontiers in Microbiology. 11: 478. PMID 32265893 DOI: 10.3389/fmicb.2020.00478 |
0.324 |
|
| 2019 |
Trinetta V, Magossi G, Allard MW, Tallent SM, Brown EW, Lomonaco S. Characterization of Isolates from Selected U.S. Swine Feed Mills by Whole-Genome Sequencing. Foodborne Pathogens and Disease. PMID 31702400 DOI: 10.1089/Fpd.2019.2701 |
0.331 |
|
| 2018 |
Worley J, Meng J, Allard MW, Brown EW, Timme RE. Salmonella enterica Phylogeny Based on Whole-Genome Sequencing Reveals Two New Clades and Novel Patterns of Horizontally Acquired Genetic Elements. Mbio. 9. PMID 30482836 DOI: 10.1128/Mbio.02303-18 |
0.387 |
|
| 2018 |
Campioni F, Cao G, Kastanis G, Janies DA, Bergamini AMM, Rodrigues DDP, Stones R, Brown E, Allard MW, Falcão JP. Changing of the Genomic Pattern of Salmonella Enteritidis Strains Isolated in Brazil Over a 48 year-period revealed by Whole Genome SNP Analyses. Scientific Reports. 8: 10478. PMID 29993044 DOI: 10.1038/s41598-018-28844-6 |
0.339 |
|
| 2018 |
Cao G, Allard M, Hoffmann M, Muruvanda T, Luo Y, Payne J, Meng K, Zhao S, McDermott P, Brown E, Meng J. Sequence Analysis of IncA/C and IncI1 Plasmids Isolated from Multidrug-Resistant Salmonella Newport Using Single-Molecule Real-Time Sequencing. Foodborne Pathogens and Disease. PMID 29620958 DOI: 10.1089/Fpd.2017.2385 |
0.315 |
|
| 2018 |
Lomonaco S, Gallina S, Filipello V, Sanchez Leon M, Kastanis GJ, Allard M, Brown E, Amato E, Pontello M, Decastelli L. Draft Genome Sequences of 510 Listeria monocytogenes Strains from Food Isolates and Human Listeriosis Cases from Northern Italy. Genome Announcements. 6. PMID 29348329 DOI: 10.1128/genomeA.01276-17 |
0.307 |
|
| 2017 |
Hoffmann M, Pettengill JB, Gonzalez-Escalona N, Miller J, Ayers SL, Zhao S, Allard MW, McDermott PF, Brown EW, Monday SR. Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica. Frontiers in Microbiology. 8: 1459. PMID 28824587 DOI: 10.3389/fmicb.2017.01459 |
0.311 |
|
| 2017 |
Chen Y, Luo Y, Carleton H, Timme R, Melka D, Muruvanda T, Wang C, Kastanis G, Katz LS, Turner L, Fritzinger A, Moore T, Stones R, Blankenship J, Salter M, ... ... Brown EW, et al. Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes associated with an outbreak linked to cheese, United States, 2013. Applied and Environmental Microbiology. PMID 28550058 DOI: 10.1128/Aem.00633-17 |
0.3 |
|
| 2017 |
Zheng J, Luo Y, Reed E, Bell R, Brown EW, Hoffmann M. Whole-genome comparative analysis of Salmonella enterica serovar Newport strains reveals lineage-specific divergence. Genome Biology and Evolution. PMID 28379364 DOI: 10.1093/gbe/evx065 |
0.302 |
|
| 2017 |
Chen Y, Luo Y, Curry P, Timme R, Melka D, Doyle M, Parish M, Hammack TS, Allard MW, Brown EW, Strain EA. Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States. Plos One. 12: e0171389. PMID 28166293 DOI: 10.1371/Journal.Pone.0171389 |
0.304 |
|
| 2017 |
Chen Y, Luo Y, Pettengill J, Timme R, Melka D, Doyle M, Jackson A, Parish M, Hammack TS, Allard M, Brown EW, Strain EA. Singleton ST382, an emerging clonal group of Listeria monocytogenes associated with three multistate outbreaks linked to contaminated stone fruit, caramel apples and leafy green salad. Journal of Clinical Microbiology. PMID 28053218 DOI: 10.1128/Jcm.02140-16 |
0.314 |
|
| 2016 |
Chen Y, Gonzalez-Escalona N, Hammack TS, Allard M, Strain EA, Brown EW. Core genome multilocus sequence typing for the identification of globally distributed clonal groups and differentiation of outbreak strains of Listeria monocytogenes. Applied and Environmental Microbiology. PMID 27520821 DOI: 10.1128/AEM.01532-16 |
0.386 |
|
| 2016 |
Toro M, Retamal P, Ayers S, Barreto M, Allard M, Brown EW, Gonzalez-Escalona N. Whole genome sequencing analysis of Salmonella Enteritidis isolated in Chile provides insights about possible transmission between gulls, poultry and humans. Applied and Environmental Microbiology. PMID 27520817 DOI: 10.1128/AEM.01760-16 |
0.324 |
|
| 2016 |
Zhang J, Cao G, Xu X, Allard M, Li P, Brown E, Yang X, Pan H, Meng J. Evolution and Diversity of Listeria monocytogenes from Clinical and Food Samples in Shanghai, China. Frontiers in Microbiology. 7: 1138. PMID 27499751 DOI: 10.3389/Fmicb.2016.01138 |
0.362 |
|
| 2016 |
Wang H, Zheng J, Ayers S, Melka DC, Curry PE, Payne JS, Laasri A, Wang C, Hammack TS, Brown EW. Draft Genome Sequences of Salmonella enterica subsp. enterica Serovars Typhimurium and Nottingham Isolated from Food Products. Genome Announcements. 4. PMID 27445384 DOI: 10.1128/genomeA.00699-16 |
0.301 |
|
| 2016 |
Wilson MR, Brown E, Keys C, Strain E, Luo Y, Muruvanda T, Grim C, Jean-Gilles Beaubrun J, Jarvis K, Ewing L, Gopinath G, Hanes D, Allard MW, Musser S. Whole Genome DNA Sequence Analysis of Salmonella subspecies enterica serotype Tennessee obtained from related peanut butter foodborne outbreaks. Plos One. 11: e0146929. PMID 27258142 DOI: 10.1371/journal.pone.0146929 |
0.3 |
|
| 2015 |
Hayford AE, Brown EW, Zhao S, Mammel MK, Gangiredla J, Abbott JW, Friedman SL, Ayers SL, Lewis JL, Lacher DW, McDermott P, Elkins CA. Genetic and Resistance Phenotypic Subtyping of Salmonella Saintpaul Isolates from Various Food Sources and Humans: Phylogenetic Concordance in Combinatory Analyses. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 26299886 DOI: 10.1016/J.Meegid.2015.08.022 |
0.318 |
|
| 2015 |
Wang H, Chen Y, Ayers S, Melka D, Laasri A, Payne JS, Zheng J, Son I, Timme R, Kastanis G, Hammack TS, Strain E, Allard MW, Evans PS, Brown EW. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Give, Isolated from an Imported Chili Powder Product. Genome Announcements. 3. PMID 26139723 DOI: 10.1128/Genomea.00726-15 |
0.314 |
|
| 2015 |
Toro M, Retamal P, Allard M, Brown EW, Evans P, Gonzalez-Escalona N. Draft Genome Sequences of 33 Salmonella enterica Clinical and Wildlife Isolates from Chile. Genome Announcements. 3. PMID 25792040 DOI: 10.1128/genomeA.00054-15 |
0.336 |
|
| 2015 |
Haendiges J, Timme R, Allard MW, Myers RA, Brown EW, Gonzalez-Escalona N. Characterization of Vibrio parahaemolyticus clinical strains from Maryland (2012-2013) and comparisons to a locally and globally diverse V. parahaemolyticus strains by whole-genome sequence analysis. Frontiers in Microbiology. 6: 125. PMID 25745421 DOI: 10.3389/Fmicb.2015.00125 |
0.367 |
|
| 2015 |
González-Escalona N, Gavilan RG, Brown EW, Martinez-Urtaza J. Transoceanic spreading of pathogenic strains of Vibrio parahaemolyticus with distinctive genetic signatures in the recA gene. Plos One. 10: e0117485. PMID 25679989 DOI: 10.1371/journal.pone.0117485 |
0.439 |
|
| 2014 |
Gonzalez-Escalona N, Thirunavukkarasu N, Singh A, Toro M, Brown EW, Zink D, Rummel A, Sharma SK. Draft Genome Sequence of Bivalent Clostridium botulinum Strain IBCA10-7060, Encoding Botulinum Neurotoxin B and a New FA Mosaic Type. Genome Announcements. 2. PMID 25502671 DOI: 10.1128/genomeA.01275-14 |
0.323 |
|
| 2014 |
Cao G, Allard M, Strain E, Stones R, Zhao S, Brown E, Meng J. Genetic diversity of Salmonella pathogenicity islands SPI-5 and SPI-6 in Salmonella Newport. Foodborne Pathogens and Disease. 11: 798-807. PMID 25188010 DOI: 10.1089/fpd.2014.1784 |
0.375 |
|
| 2014 |
Soler-García AA, De Jesús AJ, Taylor K, Brown EW. Differentiation of Salmonella strains from the SARA, SARB and SARC reference collections by using three genes PCR-RFLP and the 2100 Agilent Bioanalyzer. Frontiers in Microbiology. 5: 417. PMID 25157247 DOI: 10.3389/fmicb.2014.00417 |
0.307 |
|
| 2014 |
Haendiges J, Timme R, Allard M, Myers RA, Payne J, Brown EW, Evans P, Gonzalez-Escalona N. Draft Genome Sequences of Clinical Vibrio parahaemolyticus Strains Isolated in Maryland (2010 to 2013). Genome Announcements. 2. PMID 25103764 DOI: 10.1128/Genomea.00776-14 |
0.32 |
|
| 2014 |
Evans PS, Luo Y, Muruvanda T, Ayers S, Hiatt B, Hoffman M, Zhao S, Allard MW, Brown EW. Complete Genome Sequences of Salmonella enterica Serovar Heidelberg Strains Associated with a Multistate Food-Borne Illness Investigation. Genome Announcements. 2. PMID 24903882 DOI: 10.1128/genomeA.01154-13 |
0.306 |
|
| 2014 |
Pettengill JB, Timme RE, Barrangou R, Toro M, Allard MW, Strain E, Musser SM, Brown EW. The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica. Peerj. 2: e340. PMID 24765574 DOI: 10.7717/Peerj.340 |
0.319 |
|
| 2014 |
Hoffmann M, Zhao S, Pettengill J, Luo Y, Monday SR, Abbott J, Ayers SL, Cinar HN, Muruvanda T, Li C, Allard MW, Whichard J, Meng J, Brown EW, McDermott PF. Comparative genomic analysis and virulence differences in closely related salmonella enterica serotype heidelberg isolates from humans, retail meats, and animals. Genome Biology and Evolution. 6: 1046-68. PMID 24732280 DOI: 10.1093/Gbe/Evu079 |
0.35 |
|
| 2014 |
Toro M, Cao G, Ju W, Allard M, Barrangou R, Zhao S, Brown E, Meng J. Association of clustered regularly interspaced short palindromic repeat (CRISPR) elements with specific serotypes and virulence potential of shiga toxin-producing Escherichia coli. Applied and Environmental Microbiology. 80: 1411-20. PMID 24334663 DOI: 10.1128/Aem.03018-13 |
0.301 |
|
| 2013 |
Hoffmann M, Monday SR, McCarthy PJ, Lopez JV, Fischer M, Brown EW. Genetic and phylogenetic evidence for horizontal gene transfer among ecologically disparate groups of marine Vibrio. Cladistics : the International Journal of the Willi Hennig Society. 29: 46-64. PMID 34814374 DOI: 10.1111/j.1096-0031.2012.00416.x |
0.59 |
|
| 2013 |
Lienau EK, Blazar JM, Wang C, Brown EW, Stones R, Musser S, Allard MW. Phylogenomic analysis identifies gene gains that define Salmonella enterica subspecies I. Plos One. 8: e76821. PMID 24204679 DOI: 10.1371/journal.pone.0076821 |
0.358 |
|
| 2013 |
Timme RE, Pettengill JB, Allard MW, Strain E, Barrangou R, Wehnes C, Van Kessel JS, Karns JS, Musser SM, Brown EW. Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters. Genome Biology and Evolution. 5: 2109-23. PMID 24158624 DOI: 10.1093/Gbe/Evt159 |
0.33 |
|
| 2013 |
Gonzalez-Escalona N, McFarland MA, Rump LV, Payne J, Andrzejewski D, Brown EW, Evans PS, Croley TR. Draft Genome Sequences of Two O104:H21 Escherichia coli Isolates Causing Hemorrhagic Colitis during a 1994 Montana Outbreak Provide Insight into Their Pathogenicity. Genome Announcements. 1. PMID 24092795 DOI: 10.1128/genomeA.00805-13 |
0.303 |
|
| 2013 |
Cao G, Meng J, Strain E, Stones R, Pettengill J, Zhao S, McDermott P, Brown E, Allard M. Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing. Plos One. 8: e55687. PMID 23409020 DOI: 10.1371/Journal.Pone.0055687 |
0.371 |
|
| 2013 |
Allard MW, Luo Y, Strain E, Pettengill J, Timme R, Wang C, Li C, Keys CE, Zheng J, Stones R, Wilson MR, Musser SM, Brown EW. On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004. Plos One. 8: e55254. PMID 23383127 DOI: 10.1371/Journal.Pone.0055254 |
0.324 |
|
| 2012 |
Lusk TS, Ottesen AR, White JR, Allard MW, Brown EW, Kase JA. Characterization of microflora in Latin-style cheeses by next-generation sequencing technology. Bmc Microbiology. 12: 254. PMID 23134566 DOI: 10.1186/1471-2180-12-254 |
0.306 |
|
| 2012 |
Cao G, Zhao S, Strain E, Luo Y, Timme R, Wang C, Brown E, Meng J, Allard M. Draft genome sequences of eight Salmonella enterica serotype newport strains from diverse hosts and locations. Journal of Bacteriology. 194: 5146. PMID 22933769 DOI: 10.1128/Jb.01171-12 |
0.306 |
|
| 2012 |
Allard MW, Luo Y, Strain E, Li C, Keys CE, Son I, Stones R, Musser SM, Brown EW. High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach. Bmc Genomics. 13: 32. PMID 22260654 DOI: 10.1186/1471-2164-13-32 |
0.364 |
|
| 2012 |
Hoffmann M, Monday SR, Allard MW, Strain EA, Whittaker P, Naum M, McCarthy PJ, Lopez JV, Fischer M, Brown EW. Vibrio caribbeanicus sp. nov., isolated from the marine sponge Scleritoderma cyanea. International Journal of Systematic and Evolutionary Microbiology. 62: 1736-43. PMID 21930677 DOI: 10.1099/Ijs.0.032375-0 |
0.568 |
|
| 2011 |
Bell RL, González-Escalona N, Stones R, Brown EW. Phylogenetic evaluation of the 'Typhimurium' complex of Salmonella strains using a seven-gene multi-locus sequence analysis. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 83-91. PMID 20970525 DOI: 10.1016/j.meegid.2010.10.005 |
0.385 |
|
| 2011 |
Trujillo S, Keys CE, Brown EW. Evaluation of the taxonomic utility of six-enzyme pulsed-field gel electrophoresis in reconstructing Salmonella subspecies phylogeny. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 92-102. PMID 20959148 DOI: 10.1016/j.meegid.2010.10.004 |
0.337 |
|
| 2010 |
Hoffmann M, Fischer M, Ottesen A, McCarthy PJ, Lopez JV, Brown EW, Monday SR. Population dynamics of Vibrio spp. associated with marine sponge microcosms. The Isme Journal. 4: 1608-12. PMID 20596073 DOI: 10.1038/Ismej.2010.85 |
0.601 |
|
| 2008 |
Naum M, Brown EW, Mason-Gamer RJ. Is 16S rDNA a reliable phylogenetic marker to characterize relationships below the family level in the enterobacteriaceae? Journal of Molecular Evolution. 66: 630-42. PMID 18504519 DOI: 10.1007/S00239-008-9115-3 |
0.326 |
|
| 2005 |
Li B, Brown EW, D'Agostino C, Leclerc JE, Cebula TA. Structure and distribution of the phosphoprotein phosphatase genes, prpA and prpB, among Shigella subgroups. Microbiology (Reading, England). 151: 2671-83. PMID 16079345 DOI: 10.1099/mic.0.27990-0 |
0.32 |
|
| 2003 |
Brown EW, Mammel MK, LeClerc JE, Cebula TA. Limited boundaries for extensive horizontal gene transfer among Salmonella pathogens. Proceedings of the National Academy of Sciences of the United States of America. 100: 15676-81. PMID 14671318 DOI: 10.1073/pnas.2634406100 |
0.389 |
|
| 2002 |
Brown EW, Kotewicz ML, Cebula TA. Detection of recombination among Salmonella enterica strains using the incongruence length difference test. Molecular Phylogenetics and Evolution. 24: 102-20. PMID 12128032 DOI: 10.1016/S1055-7903(02)00222-1 |
0.317 |
|
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