| Year |
Citation |
Score |
| 2023 |
Sigauke RF, Sanford L, Maas ZL, Jones T, Stanley JT, Townsend HA, Allen MA, Dowell RD. Atlas of nascent RNA transcripts reveals enhancer to gene linkages. Biorxiv : the Preprint Server For Biology. PMID 38105978 DOI: 10.1101/2023.12.07.570626 |
0.428 |
|
| 2023 |
Lammer NC, Allen MA, Batey RT, Wuttke DS. Quantification of transcriptome changes to investigate the role of glucocorticoid receptor-RNA binding during dexamethasone treatment. Bmc Research Notes. 16: 181. PMID 37608297 DOI: 10.1186/s13104-023-06446-4 |
0.322 |
|
| 2023 |
Lammer NC, Ashraf HM, Ugay DA, Spencer SL, Allen MA, Batey RT, Wuttke DS. RNA binding by the glucocorticoid receptor attenuates dexamethasone-induced gene activation. Scientific Reports. 13: 9385. PMID 37296231 DOI: 10.1038/s41598-023-35549-y |
0.432 |
|
| 2019 |
Cardiello JF, Sanchez GJ, Allen MA, Dowell RD. Lessons from eRNAs: understanding transcriptional regulation through the lens of nascent RNAs. Transcription. 1-16. PMID 31856658 DOI: 10.1080/21541264.2019.1704128 |
0.477 |
|
| 2019 |
Sasse SK, Gruca M, Allen MA, Kadiyala V, Song T, Gally F, Gupta A, Pufall MA, Dowell RD, Gerber AN. Nascent transcript analysis of glucocorticoid crosstalk with TNF defines primary and cooperative inflammatory repression. Genome Research. PMID 31519741 DOI: 10.1101/Gr.248187.119 |
0.426 |
|
| 2019 |
Melnick M, Gonzales P, Cabral J, Allen MA, Dowell RD, Link CD. Heat shock in C. elegans induces downstream of gene transcription and accumulation of double-stranded RNA. Plos One. 14: e0206715. PMID 30958820 DOI: 10.1371/Journal.Pone.0206715 |
0.485 |
|
| 2018 |
Tripodi IJ, Allen MA, Dowell RD. Detecting Differential Transcription Factor Activity from ATAC-Seq Data. Molecules (Basel, Switzerland). 23. PMID 29748466 DOI: 10.3390/Molecules23051136 |
0.392 |
|
| 2018 |
Azofeifa JG, Allen MA, Hendrix JR, Read T, Rubin JD, Dowell RD. Enhancer RNA profiling predicts transcription factor activity. Genome Research. PMID 29449408 DOI: 10.1101/Gr.225755.117 |
0.476 |
|
| 2017 |
Ebmeier CC, Erickson B, Allen BL, Allen MA, Kim H, Fong N, Jacobsen JR, Liang K, Shilatifard A, Dowell RD, Old WM, Bentley DL, Taatjes DJ. Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications. Cell Reports. 20: 1173-1186. PMID 28768201 DOI: 10.1016/J.Celrep.2017.07.021 |
0.401 |
|
| 2017 |
Azofeifa JG, Allen MA, Lladser ME, Dowell RD. An Annotation Agnostic Algorithm for Detecting Nascent RNA Transcripts in GRO-Seq. Ieee/Acm Transactions On Computational Biology and Bioinformatics. 14: 1070-1081. PMID 26829802 DOI: 10.1109/Tcbb.2016.2520919 |
0.483 |
|
| 2016 |
Lladser ME, Azofeifa JG, Allen MA, Dowell RD. RNA Pol II transcription model and interpretation of GRO-seq data. Journal of Mathematical Biology. PMID 27142882 DOI: 10.1007/S00285-016-1014-4 |
0.443 |
|
| 2014 |
Allen MA, Andrysik Z, Dengler VL, Mellert HS, Guarnieri A, Freeman JA, Sullivan KD, Galbraith MD, Luo X, Kraus WL, Dowell RD, Espinosa JM. Author response: Global analysis of p53-regulated transcription identifies its direct targets and unexpected regulatory mechanisms Elife. DOI: 10.7554/Elife.02200.019 |
0.351 |
|
| 2014 |
Azofeifa J, Allen MA, Lladser M, Dowell R. FStitch: A fast and simple algorithm for detecting nascent RNA transcripts Acm Bcb 2014 - 5th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 174-183. DOI: 10.1145/2649387.2649427 |
0.397 |
|
| 2013 |
Galbraith MD, Allen MA, Bensard CL, Wang X, Schwinn MK, Qin B, Long HW, Daniels DL, Hahn WC, Dowell RD, Espinosa JM. HIF1A employs CDK8-mediator to stimulate RNAPII elongation in response to hypoxia. Cell. 153: 1327-39. PMID 23746844 DOI: 10.1016/J.Cell.2013.04.048 |
0.423 |
|
| 2011 |
Allen MA, Hillier LW, Waterston RH, Blumenthal T. A global analysis of C. elegans trans-splicing Genome Research. 21: 255-264. PMID 21177958 DOI: 10.1101/Gr.113811.110 |
0.637 |
|
| 2010 |
Lasda EL, Allen MA, Blumenthal T. Polycistronic pre-mRNA processing in vitro: snRNP and pre-mRNA role reversal in trans-splicing. Genes & Development. 24: 1645-58. PMID 20624853 DOI: 10.1101/Gad.1940010 |
0.542 |
|
| 2008 |
Cui M, Allen MA, Larsen A, MacMorris M, Han M, Blumenthal T. Genes involved in pre-mRNA 3′-end formation and transcription termination revealed by a lin-15 operon Muv suppressor screen Proceedings of the National Academy of Sciences of the United States of America. 105: 16665-16670. PMID 18946043 DOI: 10.1073/Pnas.0807104105 |
0.613 |
|
| 2008 |
Vicens Q, Allen MA, Gilbert SD, Reznik B, Gooding AR, Batey RT. The Cech Symposium: a celebration of 25 years of ribozymes, 10 years of TERT, and 60 years of Tom. Rna (New York, N.Y.). 14: 397-403. PMID 18203922 DOI: 10.1261/Rna.910008 |
0.346 |
|
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