Year |
Citation |
Score |
2023 |
Jia Q, Zeng H, Li M, Tang J, Xiao N, Gao S, Li H, Zhang J, Zhang Z, Xie W. Binding asymmetry and conformational studies of the AtGSDA dimer. Computational and Structural Biotechnology Journal. 21: 5515-5522. PMID 38022696 DOI: 10.1016/j.csbj.2023.11.004 |
0.321 |
|
2022 |
Li J, Zhong F, Li M, Liu Y, Wang L, Liu M, Li F, Zhang J, Wu J, Shi Y, Zhang Z, Tu X, Ruan K, Gao J. Two Binding Sites of SARS-CoV-2 Macrodomain 3 Probed by Oxaprozin and Meclomen. Journal of Medicinal Chemistry. PMID 36356292 DOI: 10.1021/acs.jmedchem.2c01168 |
0.577 |
|
2021 |
Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, Abdellatif M, Abdoli A, Abel S, Abeliovich H, Abildgaard MH, Abudu YP, Acevedo-Arozena A, Adamopoulos IE, Adeli K, Adolph TE, Adornetto A, Aflaki E, ... ... Zhang Z, ... ... Zhang Z, ... ... Zhang Z, ... ... Zhang Z, ... ... Zhang Z, ... ... Zhang Z, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy. 1-382. PMID 33634751 DOI: 10.1080/15548627.2020.1797280 |
0.326 |
|
2020 |
Lv M, Gao J, Li M, Ma R, Li F, Liu Y, Liu M, Zhang J, Yao X, Wu J, Shi Y, Tang Y, Pan Y, Zhang ZY, Ruan K. Conformational Selection in Ligand Recognition by the First Tudor Domain of PHF20L1. The Journal of Physical Chemistry Letters. PMID 32885980 DOI: 10.1021/Acs.Jpclett.0C02039 |
0.656 |
|
2020 |
Peng J, Yuan C, Hua X, Zhang Z. Molecular mechanism of histone variant H2A.B on stability and assembly of nucleosome and chromatin structures. Epigenetics & Chromatin. 13: 28. PMID 32664941 DOI: 10.1186/S13072-020-00351-X |
0.676 |
|
2019 |
Zuo G, Chen ZP, Jiang YL, Zhu Z, Ding C, Zhang Z, Chen Y, Zhou CZ, Li Q. Structural insights into repression of the Pneumococcal fatty acid synthesis pathway by repressor FabT and co-repressor acyl-ACP. Febs Letters. PMID 31291684 DOI: 10.1002/1873-3468.13534 |
0.311 |
|
2019 |
Zhang J, Guo Q, Gao J, Xu C, Zhang B, Li M, She J, Shi Y, Zhang Z, Ruan K, Wu J. Structural insight into the unique dsDNA binding topology of the human ORC2 wing helix domain. The Febs Journal. PMID 30963726 DOI: 10.1111/Febs.14844 |
0.675 |
|
2019 |
Peng J, Yuan C, Ma R, Zhang Z. Backmapping from Multiresolution Coarse-Grained Models to Atomic Structures of Large Biomolecules by Restrained Molecular Dynamics Simulations using Bayesian Inference. Journal of Chemical Theory and Computation. PMID 30908042 DOI: 10.1021/Acs.Jctc.9B00062 |
0.706 |
|
2019 |
Ye C, Ding C, Ma R, Wang J, Zhang Z. Electrostatic Interactions Determine Entrance/Release order of Substrates in the Catalytic Cycle of Adenylate Kinase. Proteins. PMID 30615212 DOI: 10.1002/Prot.25655 |
0.372 |
|
2018 |
Xu D, Ma R, Zhang J, Liu Z, Wu B, Peng J, Zhai Y, Gong Q, Shi Y, Wu J, Wu Q, Zhang Z, Ruan K. Dynamic Nature of CTCF Tandem 11 Zinc Fingers in Multivalent Recognition of DNA as Revealed by NMR Spectroscopy. The Journal of Physical Chemistry Letters. PMID 29965776 DOI: 10.1021/Acs.Jpclett.8B01440 |
0.756 |
|
2017 |
Xu L, Wang L, Peng J, Li F, Wu L, Zhang B, Lv M, Zhang J, Gong Q, Zhang R, Zuo X, Zhang Z, Wu J, Tang Y, Shi Y. Insights into the Structure of Dimeric RNA Helicase CsdA and Indispensable Role of Its C-Terminal Regions. Structure (London, England : 1993). PMID 29107486 DOI: 10.1016/J.Str.2017.09.013 |
0.772 |
|
2017 |
Bao X, Liu H, Liu X, Ruan K, Zhang Y, Zhang Z, Hu Q, Liu Y, Akram S, Zhang J, Gong Q, Wang W, Yuan X, Li J, Zhao L, et al. Mitosis-specific acetylation tunes Ran effector binding for chromosome segregation. Journal of Molecular Cell Biology. PMID 29040603 DOI: 10.1093/Jmcb/Mjx045 |
0.596 |
|
2017 |
Wen B, Wang W, Zhang J, Gong Q, Shi Y, Wu J, Zhang Z. Structural and dynamic properties of the C-terminal region of the Escherichia coli RNA chaperone Hfq: integrative experimental and computational studies. Physical Chemistry Chemical Physics : Pccp. PMID 28752165 DOI: 10.1039/C7Cp01044C |
0.623 |
|
2017 |
Cheng P, Peng J, Zhang Z. SAXS-Oriented Ensemble Refinement of Flexible Biomolecules. Biophysical Journal. 112: 1295-1301. PMID 28402873 DOI: 10.1016/J.Bpj.2017.02.024 |
0.738 |
|
2016 |
Peng J, Zhang Z. Unraveling low-resolution structural data of large biomolecules by constructing atomic models with experiment-targeted parallel cascade selection simulations. Scientific Reports. 6: 29360. PMID 27377017 DOI: 10.1038/Srep29360 |
0.704 |
|
2016 |
Dong J, Zhang Y, Zhang Z. pH dependence of ligand-induced human epidermal growth factor receptor activation investigated by molecular dynamics simulations. Journal of Molecular Modeling. 22: 131. PMID 27179806 DOI: 10.1007/S00894-016-3000-6 |
0.3 |
|
2016 |
Ling S, Wang W, Yu L, Peng J, Cai X, Xiong Y, Hayati Z, Zhang L, Zhang Z, Song L, Tian C. Structure of an E. coli integral membrane sulfurtransferase and its structural transition upon SCN(-) binding defined by EPR-based hybrid method. Scientific Reports. 6: 20025. PMID 26817826 DOI: 10.1038/Srep20025 |
0.724 |
|
2016 |
Deng X, Qin X, Chen L, Jia Q, Zhang Y, Zhang Z, Lei D, Ren G, Zhou Z, Wang Z, Li Q, Xie W. Large Conformational Changes of Insertion 3 in Human Glycyl-tRNA synthetase (hGlyRS) during Catalysis. The Journal of Biological Chemistry. PMID 26797133 DOI: 10.1074/Jbc.M115.679126 |
0.318 |
|
2015 |
Jia N, Liu N, Cheng W, Jiang YL, Sun H, Chen LL, Peng J, Zhang Y, Ding YH, Zhang ZH, Wang X, Cai G, Wang J, Dong MQ, Zhang Z, et al. Structural basis for receptor recognition and pore formation of a zebrafish aerolysin-like protein. Embo Reports. PMID 26711430 DOI: 10.15252/Embr.201540851 |
0.712 |
|
2015 |
Hu HX, Jiang YL, Zhao MX, Cai K, Liu S, Wen B, Lv P, Zhang Y, Peng J, Zhong H, Yu HM, Ren YM, Zhang Z, Tian C, Wu Q, et al. Structural insights into HetR-PatS interaction involved in cyanobacterial pattern formation. Scientific Reports. 5: 16470. PMID 26576507 DOI: 10.1038/Srep16470 |
0.74 |
|
2015 |
Zhang Y, Wen B, Peng J, Zuo X, Gong Q, Zhang Z. Determining structural ensembles of flexible multi-domain proteins using small-angle X-ray scattering and molecular dynamics simulations. Protein & Cell. 6: 619-23. PMID 25944044 DOI: 10.1007/S13238-015-0162-4 |
0.717 |
|
2015 |
Chen P, Liu Z, Wang X, Peng J, Sun Q, Li J, Wang M, Niu L, Zhang Z, Cai G, Teng M, Li X. Crystal and EM structures of human phosphoribosyl pyrophosphate synthase I (PRS1) provide novel insights into the disease-associated mutations. Plos One. 10: e0120304. PMID 25781187 DOI: 10.1371/Journal.Pone.0120304 |
0.707 |
|
2015 |
Zhang Z. Systematic methods for defining coarse-grained maps in large biomolecules. Advances in Experimental Medicine and Biology. 827: 33-48. PMID 25387958 DOI: 10.1007/978-94-017-9245-5_4 |
0.374 |
|
2014 |
Peng J, Zhang Z. Simulating Large-Scale Conformational Changes of Proteins by Accelerating Collective Motions Obtained from Principal Component Analysis. Journal of Chemical Theory and Computation. 10: 3449-58. PMID 26588312 DOI: 10.1021/Ct5000988 |
0.699 |
|
2014 |
Wen B, Peng J, Zuo X, Gong Q, Zhang Z. Characterization of protein flexibility using small-angle x-ray scattering and amplified collective motion simulations. Biophysical Journal. 107: 956-64. PMID 25140431 DOI: 10.1016/J.Bpj.2014.07.005 |
0.718 |
|
2014 |
Zou Y, Shao Z, Peng J, Li F, Gong D, Wang C, Zuo X, Zhang Z, Wu J, Shi Y, Gong Q. Crystal structure of triple-BRCT-domain of ECT2 and insights into the binding characteristics to CYK-4. Febs Letters. 588: 2911-20. PMID 25068414 DOI: 10.1016/J.Febslet.2014.07.019 |
0.779 |
|
2014 |
Yang YH, Jiang YL, Zhang J, Wang L, Bai XH, Zhang SJ, Ren YM, Li N, Zhang YH, Zhang Z, Gong Q, Mei Y, Xue T, Zhang JR, Chen Y, et al. Structural insights into SraP-mediated Staphylococcus aureus adhesion to host cells. Plos Pathogens. 10: e1004169. PMID 24901708 DOI: 10.1371/Journal.Ppat.1004169 |
0.38 |
|
2014 |
Zhao D, Wang X, Peng J, Wang C, Li F, Sun Q, Zhang Y, Zhang J, Cai G, Zuo X, Wu J, Shi Y, Zhang Z, Gong Q. Structural investigation of the interaction between the tandem SH3 domains of c-Cbl-associated protein and vinculin. Journal of Structural Biology. 187: 194-205. PMID 24878663 DOI: 10.1016/J.Jsb.2014.05.009 |
0.793 |
|
2014 |
Wang C, Zhu Y, Caceres TB, Liu L, Peng J, Wang J, Chen J, Chen X, Zhang Z, Zuo X, Gong Q, Teng M, Hevel JM, Wu J, Shi Y. Structural determinants for the strict monomethylation activity by trypanosoma brucei protein arginine methyltransferase 7. Structure (London, England : 1993). 22: 756-68. PMID 24726341 DOI: 10.1016/J.Str.2014.03.003 |
0.754 |
|
2014 |
Wang J, Qin S, Li F, Li S, Zhang W, Peng J, Zhang Z, Gong Q, Wu J, Shi Y. Crystal structure of human BS69 Bromo-ZnF-PWWP reveals its role in H3K36me3 nucleosome binding. Cell Research. 24: 890-3. PMID 24675531 DOI: 10.1038/Cr.2014.38 |
0.752 |
|
2014 |
Wang C, Zhu Y, Chen J, Li X, Peng J, Chen J, Zou Y, Zhang Z, Jin H, Yang P, Wu J, Niu L, Gong Q, Teng M, Shi Y. Crystal structure of arginine methyltransferase 6 from Trypanosoma brucei. Plos One. 9: e87267. PMID 24498306 DOI: 10.1371/Journal.Pone.0087267 |
0.767 |
|
2014 |
Shao Z, Yan W, Peng J, Zuo X, Zou Y, Li F, Gong D, Ma R, Wu J, Shi Y, Zhang Z, Teng M, Li X, Gong Q. Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate. Nucleic Acids Research. 42: 509-25. PMID 24081582 DOI: 10.1093/Nar/Gkt869 |
0.76 |
|
2014 |
Zhao D, Wang C, Zhang J, Wu J, Shi Y, Zhang Z, Gong Q. solution structure of tandem SH3 domain of Sorbin and SH3 domain-containing protein 1 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Mox/Pdb |
0.637 |
|
2013 |
Wen B, Shi Y, Zhang Z. Clustering multi-domain protein structures in the essential dynamics subspace Journal of Theoretical and Computational Chemistry. 12. DOI: 10.1142/S0219633613410083 |
0.643 |
|
2012 |
Wu B, Wang F, Zhang J, Zhang Z, Qin L, Peng J, Li F, Liu J, Lu G, Gong Q, Yao X, Wu J, Shi Y. Identification and structural basis for a novel interaction between Vav2 and Arap3. Journal of Structural Biology. 180: 84-95. PMID 22750419 DOI: 10.1016/J.Jsb.2012.06.011 |
0.781 |
|
2012 |
Shao Z, Li F, Sy SM, Yan W, Zhang Z, Gong D, Wen B, Huen MS, Gong Q, Wu J, Shi Y. Specific recognition of phosphorylated tail of H2AX by the tandem BRCT domains of MCPH1 revealed by complex structure. Journal of Structural Biology. 177: 459-68. PMID 22154951 DOI: 10.1016/J.Jsb.2011.11.022 |
0.67 |
|
2012 |
Qiu Y, Zhang W, Zhao C, Wang Y, Wang W, Zhang J, Zhang Z, Li G, Shi Y, Tu X, Wu J. Solution structure of the Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA. The Biochemical Journal. 442: 527-38. PMID 22150589 DOI: 10.1042/Bj20111885 |
0.662 |
|
2011 |
Zhang Z, Wriggers W. Polymorphism of the epidermal growth factor receptor extracellular ligand binding domain: the dimer interface depends on domain stabilization. Biochemistry. 50: 2144-56. PMID 21275429 DOI: 10.1021/bi101843s |
0.312 |
|
2006 |
Zhang Z, Boyle PC, Lu BY, Chang JY, Wriggers W. Entropic folding pathway of human epidermal growth factor explored by disulfide scrambling and amplified collective motion simulations. Biochemistry. 45: 15269-78. PMID 17176049 DOI: 10.1021/bi0615083 |
0.307 |
|
2003 |
Wang J, Zhang Z, Liu H, Shi Y. Quasiequilibrium unfolding thermodynamics of a small protein studied by molecular dynamics simulation with an explicit water model. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 061903. PMID 16241257 DOI: 10.1103/Physreve.67.061903 |
0.586 |
|
2003 |
Zhang Z, Shi Y, Liu H. Molecular dynamics simulations of peptides and proteins with amplified collective motions Biophysical Journal. 84: 3583-3593. PMID 12770868 DOI: 10.1016/S0006-3495(03)75090-5 |
0.609 |
|
2003 |
He J, Zhang Z, Shi Y, Liu H. Efficiently explore the energy landscape of proteins in molecular dynamics simulations by amplifying collective motions Journal of Chemical Physics. 119: 4005-4017. DOI: 10.1063/1.1591717 |
0.592 |
|
2001 |
Zhang Z, Zhu Y, Shi Y. Molecular dynamics simulations of urea and thermal-induced denaturation of S-peptide analogue Biophysical Chemistry. 89: 145-162. PMID 11254208 DOI: 10.1016/S0301-4622(00)00227-1 |
0.574 |
|
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